-
1
-
-
77952424321
-
Orchidaceae
-
Beijing & St. Louis: Science Press & Missouri Botanical Garden Press Wu ZY, Raven PH, Hong DY
-
Orchidaceae. Chen XQ, Liu ZJ, Zhu GH, Lang KY, Ji ZH, Luo YB, Jin XH, Cribb PJ, Wood JJ, Gale SW, et al. Flora of China Beijing & St. Louis: Science Press & Missouri Botanical Garden Press, Wu ZY, Raven PH, Hong DY, 2009 260
-
(2009)
Flora of China
, pp. 260
-
-
Chen, X.Q.1
Liu, Z.J.2
Zhu, G.H.3
Lang, K.Y.4
Ji, Z.H.5
Luo, Y.B.6
Jin, X.H.7
Cribb, P.J.8
Wood, J.J.9
Gale, S.W.10
-
2
-
-
0009816479
-
-
Surrey, United Kingdom: Royal Botanic Gardens, Kew Publishing
-
Du Puy D, Cribb P, The Genus Cymbidium, 2nd edn Surrey, United Kingdom: Royal Botanic Gardens, Kew Publishing 2007
-
(2007)
The Genus Cymbidium, 2nd Edn
-
-
Du Puy, D.1
Cribb, P.2
-
3
-
-
0009816479
-
-
London and Portland, Oregon: Christopher Helm and Timber Press
-
Du Puy D, Cribb P, The genus Cymbidium London and Portland, Oregon: Christopher Helm and Timber Press 1988
-
(1988)
The Genus Cymbidium
-
-
Du Puy, D.1
Cribb, P.2
-
5
-
-
16244408488
-
Molecular phylogenetics of Cymbidium (Orchidaceae: Maxillarieae): Sequence data from internal transcribed spacers (ITS) of nuclear ribosomal DNA and plastid matK
-
Molecular phylogenetics of Cymbidium (Orchidaceae: Maxillarieae): Sequence data from internal transcribed spacers (ITS) of nuclear ribosomal DNA and plastid matK. van den Berg C, Ryan A, Cribb PJ, Chase MW, Lindleyana 2002 17 2 102 111
-
(2002)
Lindleyana
, vol.17
, Issue.2
, pp. 102-111
-
-
Van Den Berg, C.1
Ryan, A.2
Cribb, P.J.3
Chase, M.W.4
-
6
-
-
84863393458
-
Assessment of phylogenetic inter-relationships in the genus Cymbidium (Orchidaceae) based on internal transcribed spacer region of rDNA
-
10.1016/j.gene.2011.12.052 22245612
-
Assessment of phylogenetic inter-relationships in the genus Cymbidium (Orchidaceae) based on internal transcribed spacer region of rDNA. Sharma SK, Dkhar J, Kumaria S, Tandon P, Rao SR, Gene 2012 495 1 10 15 10.1016/j.gene.2011. 12.052 22245612
-
(2012)
Gene
, vol.495
, Issue.1
, pp. 10-15
-
-
Sharma, S.K.1
Dkhar, J.2
Kumaria, S.3
Tandon, P.4
Rao, S.R.5
-
7
-
-
84877580877
-
DNA barcoding of the Cymbidium species (Orchidaceae) in Thailand
-
DNA barcoding of the Cymbidium species (Orchidaceae) in Thailand. Pornarong S, Afr J Agric Res 2012 7 3 393 404
-
(2012)
Afr J Agric Res
, vol.7
, Issue.3
, pp. 393-404
-
-
Pornarong, S.1
-
8
-
-
33644535124
-
Genetic diversity and phylogenetic relationships among and within species of oriental cymbidiums based on RAPD analysis
-
10.1016/j.scienta.2006.01.010
-
Genetic diversity and phylogenetic relationships among and within species of oriental cymbidiums based on RAPD analysis. Choi SH, Kim MJ, Lee JS, Ryu KH, Sci Hortic 2006 108 1 79 85 10.1016/j.scienta.2006.01.010
-
(2006)
Sci Hortic
, vol.108
, Issue.1
, pp. 79-85
-
-
Choi, S.H.1
Kim, M.J.2
Lee, J.S.3
Ryu, K.H.4
-
9
-
-
0031905454
-
Genetic diversity and identification of cymbidium cultivars as measured by random amplified polymorphic DNA (RAPD) markers
-
Genetic diversity and identification of Cymbidium cultivars as measured by random amplified polymorphic DNA (RAPD) markers. Obara-Okeyo P, Kako S, Euphytica 1998 99 2 95 101 10.1023/A:1018374226074 (Pubitemid 28094310)
-
(1998)
Euphytica
, vol.99
, Issue.2
, pp. 95-101
-
-
Obara-Okeyo, P.1
Kako, S.2
-
10
-
-
79955942392
-
Genetic variation and cultivar identification in Cymbidium ensifolium
-
Genetic variation and cultivar identification in Cymbidium ensifolium. Wang HZ, Lu JJ, Hu X, Liu JJ, Plant Syst Evol 2011 293 1-4 101 110
-
(2011)
Plant Syst Evol
, vol.293
, Issue.1-4
, pp. 101-110
-
-
Wang, H.Z.1
Lu, J.J.2
Hu, X.3
Liu, J.J.4
-
11
-
-
36849073678
-
Sequencing breakthroughs for genomic ecology and evolutionary biology
-
DOI 10.1111/j.1471-8286.2007.02019.x
-
Sequencing breakthroughs for genomic ecology and evolutionary biology. Hudson ME, Mol Ecol Resour 2008 8 1 3 17 10.1111/j.1471-8286.2007.02019.x 21585713 (Pubitemid 350231221)
-
(2008)
Molecular Ecology Resources
, vol.8
, Issue.1
, pp. 3-17
-
-
Hudson, M.E.1
-
12
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
10.1016/j.tig.2007.12.007 18262675
-
The impact of next-generation sequencing technology on genetics. Mardis ER, Trends Genet 2008 24 3 133 141 10.1016/j.tig.2007.12.007 18262675
-
(2008)
Trends Genet
, vol.24
, Issue.3
, pp. 133-141
-
-
Mardis, E.R.1
-
13
-
-
53649106195
-
Next-generation DNA sequencing
-
10.1038/nbt1486 18846087
-
Next-generation DNA sequencing. Shendure J, Ji H, Nat Biotechnol 2008 26 10 1135 1145 10.1038/nbt1486 18846087
-
(2008)
Nat Biotechnol
, vol.26
, Issue.10
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
14
-
-
77951914538
-
The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: Structural organization and phylogenetic relationships
-
10.1093/dnares/dsp025 20007682
-
The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships. Tangphatsornruang S, Sangsrakru D, Chanprasert J, Uthaipaisanwong P, Yoocha T, Jomchai N, Tragoonrung S, DNA Res 2010 17 1 11 22 10.1093/dnares/dsp025 20007682
-
(2010)
DNA Res
, vol.17
, Issue.1
, pp. 11-22
-
-
Tangphatsornruang, S.1
Sangsrakru, D.2
Chanprasert, J.3
Uthaipaisanwong, P.4
Yoocha, T.5
Jomchai, N.6
Tragoonrung, S.7
-
15
-
-
56149096455
-
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
-
10.1093/nar/gkn502 18753151
-
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T, Nucleic Acids Res 2008 36 19 122 10.1093/nar/gkn502 18753151
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.19
, pp. 5122
-
-
Cronn, R.1
Liston, A.2
Parks, M.3
Gernandt, D.S.4
Shen, R.5
Mockler, T.6
-
16
-
-
33748685014
-
Rapid and accurate pyrosequencing of angiosperm plastid genomes
-
DOI 10.1186/1471-2229-6-17
-
Rapid and accurate pyrosequencing of angiosperm plastid genomes. Moore MJ, Dhingra A, Soltis PS, Shaw R, Farmerie WG, Folta KM, Soltis DE, BMC Plant Biol 2006 6 17 10.1186/1471-2229-6-17 16934154 (Pubitemid 44394871)
-
(2006)
BMC Plant Biology
, vol.6
, pp. 17
-
-
Moore, M.J.1
Dhingra, A.2
Soltis, P.S.3
Shaw, R.4
Farmerie, W.G.5
Folta, K.M.6
Soltis, D.E.7
-
17
-
-
19944424442
-
Methods for obtaining and analyzing whole chloroplast genome sequences
-
DOI 10.1016/S0076-6879(05)95020-9, PII S0076687905950209, Molecular Evolution: Producing the Biochemical Data
-
Methods for obtaining and analyzing whole chloroplast genome sequences. Jansen RK, Raubeson LA, Boore JL, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, dePamphilis CW, et al. Methods Enzymol 2005 395 348 384 15865976 (Pubitemid 40754377)
-
(2005)
Methods in Enzymology
, vol.395
, pp. 348-384
-
-
Jansen, R.K.1
Raubeson, L.A.2
Boore, J.L.3
DePamphilis, C.W.4
Chumley, T.W.5
Haberle, R.C.6
Wyman, S.K.7
Alverson, A.J.8
Peery, R.9
Herman, S.J.10
Fourcade, H.M.11
Kuehl, J.V.12
McNeal, J.R.13
Leebens-Mack, J.14
Cui, L.15
-
18
-
-
27144516495
-
Complete chloroplast genome sequence of glycine max and comparative analyses with other legume genomes
-
DOI 10.1007/s11103-005-8882-0
-
Complete chloroplast genome sequence of Glycine max and comparative analyses with other legume genomes. Saski C, Lee SB, Daniell H, Wood TC, Tomkins J, Kim HG, Jansen RK, Plant Mol Biol 2005 59 2 309 322 10.1007/s11103-005-8882- 0 16247559 (Pubitemid 41500491)
-
(2005)
Plant Molecular Biology
, vol.59
, Issue.2
, pp. 309-322
-
-
Saski, C.1
Lee, S.-B.2
Daniell, H.3
Wood, T.C.4
Tomkins, J.5
Kim, H.-G.6
Jansen, R.K.7
-
19
-
-
0001595241
-
Conservation of chloroplast genome structure among vascular plants
-
10.1007/BF00418529
-
Conservation of chloroplast genome structure among vascular plants. Palmer JD, Stein DB, Curr Genet 1986 10 11 823 833 10.1007/BF00418529
-
(1986)
Curr Genet
, vol.10
, Issue.11
, pp. 823-833
-
-
Palmer, J.D.1
Stein, D.B.2
-
20
-
-
11144284040
-
Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants
-
DOI 10.1093/dnares/11.4.247
-
Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants. Kim KJ, Lee HL, DNA Res 2004 11 4 247 261 10.1093/dnares/11.4.247 15500250 (Pubitemid 40040655)
-
(2004)
DNA Research
, vol.11
, Issue.4
, pp. 247-261
-
-
Kim, K.-J.1
Lee, H.-L.2
-
21
-
-
0000868055
-
Chloroplast DNA variation and plant phylogeny
-
10.2307/2399279
-
Chloroplast DNA variation and plant phylogeny. Palmer JD, Jansen RK, Michaels HJ, Chase MW, Manhart JR, Ann Mo Bot Gard 1988 75 4 1180 1206 10.2307/2399279
-
(1988)
Ann Mo Bot Gard
, vol.75
, Issue.4
, pp. 1180-1206
-
-
Palmer, J.D.1
Jansen, R.K.2
Michaels, H.J.3
Chase, M.W.4
Manhart, J.R.5
-
22
-
-
77950794398
-
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
-
10.1186/1471-2229-10-68 20398375
-
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae. Wu FH, Chan MT, Liao DC, Hsu CT, Lee YW, Daniell H, Duvall MR, Lin CS, BMC Plant Biol 2010 10 68 10.1186/1471-2229-10-68 20398375
-
(2010)
BMC Plant Biol
, vol.10
, pp. 68
-
-
Wu, F.H.1
Chan, M.T.2
Liao, D.C.3
Hsu, C.T.4
Lee, Y.W.5
Daniell, H.6
Duvall, M.R.7
Lin, C.S.8
-
23
-
-
0009852013
-
Application of DNA sequences in plant phylogenetic study
-
Application of DNA sequences in plant phylogenetic study. Tian X, Li DZ, Acta Bot Yunnanica 2002 24 2 170 184
-
(2002)
Acta Bot Yunnanica
, vol.24
, Issue.2
, pp. 170-184
-
-
Tian, X.1
Li, D.Z.2
-
24
-
-
37549054628
-
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
-
10.1073/pnas.0708072104 18048334
-
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Moore MJ, Bell CD, Soltis PS, Soltis DE, Proc Natl Acad Sci USA 2007 104 49 19363 19368 10.1073/pnas.0708072104 18048334
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.49
, pp. 19363-19368
-
-
Moore, M.J.1
Bell, C.D.2
Soltis, P.S.3
Soltis, D.E.4
-
25
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
10.1073/pnas.0709121104 18048330
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Jansen RK, Cai Z, Raubeson LA, Daniell H, Depamphilis CW, Leebens-Mack J, Muller KF, Guisinger-Bellian M, Haberle RC, Hansen AK, et al. Proc Natl Acad Sci USA 2007 104 49 19369 19374 10.1073/pnas.0709121104 18048330
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.49
, pp. 19369-19374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
Depamphilis, C.W.5
Leebens-Mack, J.6
Muller, K.F.7
Guisinger-Bellian, M.8
Haberle, R.C.9
Hansen, A.K.10
-
26
-
-
72549096467
-
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
-
10.1186/1741-7007-7-84 19954512
-
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. Parks M, Cronn R, Liston A, BMC Biol 2009 7 84 10.1186/1741-7007-7-84 19954512
-
(2009)
BMC Biol
, vol.7
, pp. 84
-
-
Parks, M.1
Cronn, R.2
Liston, A.3
-
27
-
-
77949494249
-
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
-
10.1073/pnas.0907801107 20176954
-
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE, Proc Natl Acad Sci USA 2010 107 10 4623 4628 10.1073/pnas.0907801107 20176954
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.10
, pp. 4623-4628
-
-
Moore, M.J.1
Soltis, P.S.2
Bell, C.D.3
Burleigh, J.G.4
Soltis, D.E.5
-
28
-
-
79952305603
-
Chloroplast genome sequences from total DNA for plant identification
-
10.1111/j.1467-7652.2010.00558.x 20796245
-
Chloroplast genome sequences from total DNA for plant identification. Nock CJ, Waters DL, Edwards MA, Bowen SG, Rice N, Cordeiro GM, Henry RJ, Plant Biotechnol J 2011 9 3 328 333 10.1111/j.1467-7652.2010.00558.x 20796245
-
(2011)
Plant Biotechnol J
, vol.9
, Issue.3
, pp. 328-333
-
-
Nock, C.J.1
Waters, D.L.2
Edwards, M.A.3
Bowen, S.G.4
Rice, N.5
Cordeiro, G.M.6
Henry, R.J.7
-
29
-
-
77958527485
-
The complete chloroplast genome sequence of date palm (Phoenix dactylifera L.)
-
10.1371/journal.pone.0012762 20856810
-
The complete chloroplast genome sequence of date palm (Phoenix dactylifera L.). Yang M, Zhang X, Liu G, Yin Y, Chen K, Yun Q, Zhao D, Al-Mssallem IS, Yu J, PLoS One 2010 5 9 12762 10.1371/journal.pone.0012762 20856810
-
(2010)
PLoS One
, vol.5
, Issue.9
, pp. 512762
-
-
Yang, M.1
Zhang, X.2
Liu, G.3
Yin, Y.4
Chen, K.5
Yun, Q.6
Zhao, D.7
Al-Mssallem, I.S.8
Yu, J.9
-
30
-
-
0030267939
-
Regulation of gene expression in chloroplasts of higher plants
-
Regulation of gene expression in chloroplasts of higher plants. Sugita M, Sugiura M, Plant Mol Biol 1996 32 1-2 315 326 8980485 (Pubitemid 27015363)
-
(1996)
Plant Molecular Biology
, vol.32
, Issue.1-2
, pp. 315-326
-
-
Sugita, M.1
Sugiura, M.2
-
31
-
-
34447635560
-
Comparative chloroplast genomics: Analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
-
DOI 10.1186/1471-2164-8-174
-
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus. Raubeson LA, Peery R, Chumley TW, Dziubek C, Fourcade HM, Boore JL, Jansen RK, BMC Genomics 2007 8 174 10.1186/1471-2164-8-174 17573971 (Pubitemid 47090617)
-
(2007)
BMC Genomics
, vol.8
, pp. 174
-
-
Raubeson, L.A.1
Peery, R.2
Chumley, T.W.3
Dziubek, C.4
Fourcade, H.M.5
Boore, J.L.6
Jansen, R.K.7
-
32
-
-
67650486651
-
Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: Insights into evolutionary changes in fern chloroplast genomes
-
10.1186/1471-2148-9-130 19519899
-
Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes. Gao L, Yi X, Yang YX, Su YJ, Wang T, BMC Evol Biol 2009 9 130 10.1186/1471-2148-9-130 19519899
-
(2009)
BMC Evol Biol
, vol.9
, pp. 130
-
-
Gao, L.1
Yi, X.2
Yang, Y.X.3
Su, Y.J.4
Wang, T.5
-
33
-
-
30744447444
-
The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): Comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications
-
16207935
-
The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): Comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications. Chang CC, Lin HC, Lin IP, Chow TY, Chen HH, Chen WH, Cheng CH, Lin CY, Liu SM, Chang CC, et al. Mol Biol Evol 2006 23 2 279 291 16207935
-
(2006)
Mol Biol Evol
, vol.23
, Issue.2
, pp. 279-291
-
-
Chang, C.C.1
Lin, H.C.2
Lin, I.P.3
Chow, T.Y.4
Chen, H.H.5
Chen, W.H.6
Cheng, C.H.7
Lin, C.Y.8
Liu, S.M.9
Chang, C.C.10
-
34
-
-
0025712978
-
Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
-
Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. Palmer JD, dePamphilis CW, Nature 1990 348 6299 337 339 10.1038/348337a0 2250706 (Pubitemid 120029102)
-
(1990)
Nature
, vol.348
, Issue.6299
, pp. 337-339
-
-
DePamphilis, C.W.1
Palmer, J.D.2
-
35
-
-
38949092504
-
Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis
-
DOI 10.1093/molbev/msm267
-
Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, DePamphilis CW, Boore JL, Goffinet B, Mol Biol Evol 2008 25 2 393 401 10.1093/molbev/msm267 18056074 (Pubitemid 351231612)
-
(2008)
Molecular Biology and Evolution
, vol.25
, Issue.2
, pp. 393-401
-
-
Wickett, N.J.1
Zhang, Y.2
Hansen, S.K.3
Roper, J.M.4
Kuehl, J.V.5
Plock, S.A.6
Wolf, P.G.7
Depamphilis, C.W.8
Boore, J.L.9
Goffinet, B.10
-
36
-
-
0028011752
-
Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa
-
Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa. Haberhausen G, Zetsche K, Plant Mol Biol 1994 24 1 217 222 10.1007/BF00040588 8111019 (Pubitemid 2049517)
-
(1994)
Plant Molecular Biology
, vol.24
, Issue.1
, pp. 217-222
-
-
Haberhausen, G.1
Zetsche, K.2
-
37
-
-
38849124960
-
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
-
DOI 10.1186/1471-2229-7-57
-
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta. McNeal JR, Kuehl JV, Boore JL, de Pamphilis CW, BMC Plant Biol 2007 7 57 10.1186/1471-2229-7-57 17956636 (Pubitemid 351192859)
-
(2007)
BMC Plant Biology
, vol.7
, pp. 57
-
-
McNeal, J.R.1
Kuehl, J.V.2
Boore, J.L.3
De Pamphilis, C.W.4
-
38
-
-
23944502588
-
Plastid genome structure and loss of photosynthetic ability in the parasitic genus Cuscuta
-
DOI 10.1093/jxb/eri240
-
Plastid genome structure and loss of photosynthetic ability in the parasitic genus Cuscuta. Revill MJ, Stanley S, Hibberd JM, J Exp Bot 2005 56 419 2477 2486 10.1093/jxb/eri240 16061507 (Pubitemid 41191465)
-
(2005)
Journal of Experimental Botany
, vol.56
, Issue.419
, pp. 2477-2486
-
-
Revill, M.J.W.1
Stanley, S.2
Hibberd, J.M.3
-
39
-
-
2442602491
-
Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae
-
DOI 10.1016/j.ympev.2003.10.010
-
Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae. Cameron KM, Mol Phylogenet Evol 2004 31 3 1157 1180 10.1016/j.ympev.2003.10.010 15120407 (Pubitemid 38610980)
-
(2004)
Molecular Phylogenetics and Evolution
, vol.31
, Issue.3
, pp. 1157-1180
-
-
Cameron, K.M.1
-
40
-
-
33745056510
-
Photosystem II gene sequences of psbB and psbC clarify the phylogenetic position of Vanilla (Vanilloideae, Orchidaceae)
-
DOI 10.1111/j.1096-0031.2006.00102.x
-
Photosystem II gene sequences of psbB and psbC clarify the phylogenetic position of Vanilla (Vanilloideae, Orchidaceae). Cameron KM, Molina MC, Cladistics 2006 22 3 239 248 10.1111/j.1096-0031.2006.00102.x (Pubitemid 43877162)
-
(2006)
Cladistics
, vol.22
, Issue.3
, pp. 239-248
-
-
Cameron, K.M.1
Carmen Molina, M.2
-
41
-
-
0028043489
-
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii
-
DOI 10.1073/pnas.91.21.9794
-
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Wakasugi T, Tsudzuki J, Ito S, Nakashima K, Tsudzuki T, Sugiura M, Proc Natl Acad Sci USA 1994 91 21 9794 9798 10.1073/pnas.91.21.9794 7937893 (Pubitemid 24311894)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.21
, pp. 9794-9798
-
-
Wakasugi, T.1
Tsudzuki, J.2
Ito, S.3
Nakashima, K.4
Tsudzuki, T.5
Sugiura, M.6
-
42
-
-
67349273773
-
Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
-
10.1016/j.ympev.2008.12.026 19166950
-
Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy. Wu CS, Lai YT, Lin CP, Wang YN, Chaw SM, Mol Phylogenet Evol 2009 52 1 115 124 10.1016/j.ympev.2008.12.026 19166950
-
(2009)
Mol Phylogenet Evol
, vol.52
, Issue.1
, pp. 115-124
-
-
Wu, C.S.1
Lai, Y.T.2
Lin, C.P.3
Wang, Y.N.4
Chaw, S.M.5
-
43
-
-
44049089159
-
The complete plastid genome sequence of Welwitschia mirabilis: An unusually compact plastome with accelerated divergence rates
-
DOI 10.1186/1471-2148-8-130
-
The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates. McCoy SR, Kuehl JV, Boore JL, Raubeson LA, BMC Evol Biol 2008 8 130 10.1186/1471-2148-8-130 18452621 (Pubitemid 351712932)
-
(2008)
BMC Evolutionary Biology
, vol.8
, Issue.1
, pp. 130
-
-
McCoy, S.R.1
Kuehl, J.V.2
Boore, J.L.3
Raubeson, L.A.4
-
44
-
-
0026781151
-
Chloroplast DNA inversions and the origin of the grass family (Poaceae)
-
10.1073/pnas.89.16.7722 1502190
-
Chloroplast DNA inversions and the origin of the grass family (Poaceae). Doyle JJ, Davis JI, Soreng RJ, Garvin D, Anderson MJ, Proc Natl Acad Sci USA 1992 89 16 7722 7726 10.1073/pnas.89.16.7722 1502190
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, Issue.16
, pp. 7722-7726
-
-
Doyle, J.J.1
Davis, J.I.2
Soreng, R.J.3
Garvin, D.4
Anderson, M.J.5
-
45
-
-
23944524609
-
Analysis of Acorus calamus chloroplast genome and its phylogenetic implications
-
DOI 10.1093/molbev/msi173
-
Analysis of Acorus calamus chloroplast genome and its phylogenetic implications. Goremykin VV, Holland B, Hirsch-Ernst KI, Hellwig FH, Mol Biol Evol 2005 22 9 1813 1822 10.1093/molbev/msi173 15930156 (Pubitemid 41191508)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.9
, pp. 1813-1822
-
-
Goremykin, V.V.1
Holland, B.2
Hirsch-Ernst, K.I.3
Hellwig, F.H.4
-
46
-
-
0029160870
-
Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
-
10.1006/jmbi.1995.0460 7666415
-
Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. Maier RM, Neckermann K, Igloi GL, Kossel H, J Mol Biol 1995 251 5 614 628 10.1006/jmbi.1995.0460 7666415
-
(1995)
J Mol Biol
, vol.251
, Issue.5
, pp. 614-628
-
-
Maier, R.M.1
Neckermann, K.2
Igloi, G.L.3
Kossel, H.4
-
47
-
-
46649088131
-
Complete sequence of the duckweed (Lemna minor) chloroplast genome: Structural organization and phylogenetic relationships to other angiosperms
-
10.1007/s00239-008-9091-7 18463914
-
Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms. Mardanov AV, Ravin NV, Kuznetsov BB, Samigullin TH, Antonov AS, Kolganova TV, Skyabin KG, J Mol Evol 2008 66 6 555 564 10.1007/s00239-008-9091-7 18463914
-
(2008)
J Mol Evol
, vol.66
, Issue.6
, pp. 555-564
-
-
Mardanov, A.V.1
Ravin, N.V.2
Kuznetsov, B.B.3
Samigullin, T.H.4
Antonov, A.S.5
Kolganova, T.V.6
Skyabin, K.G.7
-
48
-
-
35148887716
-
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)
-
DOI 10.1016/j.ympev.2007.06.004, PII S1055790307002072
-
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae). Hansen DR, Dastidar SG, Cai Z, Penaflor C, Kuehl JV, Boore JL, Jansen RK, Mol Phylogenet Evol 2007 45 2 547 563 10.1016/j.ympev.2007.06.004 17644003 (Pubitemid 47542450)
-
(2007)
Molecular Phylogenetics and Evolution
, vol.45
, Issue.2
, pp. 547-563
-
-
Hansen, D.R.1
Dastidar, S.G.2
Cai, Z.3
Penaflor, C.4
Kuehl, J.V.5
Boore, J.L.6
Jansen, R.K.7
-
49
-
-
77649187290
-
Implications of the plastid genome sequence of Typha (Typhaceae, Poales) for understanding genome evolution in Poaceae
-
10.1007/s00239-009-9317-3 20091301
-
Implications of the plastid genome sequence of Typha (Typhaceae, Poales) for understanding genome evolution in Poaceae. Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK, J Mol Evol 2010 70 149 166 10.1007/s00239-009-9317-3 20091301
-
(2010)
J Mol Evol
, vol.70
, pp. 149-166
-
-
Guisinger, M.M.1
Chumley, T.W.2
Kuehl, J.V.3
Boore, J.L.4
Jansen, R.K.5
-
50
-
-
0034518158
-
Vista: Visualizing global DNA sequence alignments of arbitrary length
-
VISTA: visualizing global DNA sequence alignments of arbitrary length. Mayor C, Brudno M, Schwartz JR, Poliakov A, Rubin EM, Frazer KA, Pachter LS, Dubchak I, Bioinformatics 2000 16 11 1046 1047 10.1093/bioinformatics/16.11.1046 11159318 (Pubitemid 32051021)
-
(2000)
Bioinformatics
, vol.16
, Issue.11
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
51
-
-
0035890910
-
REPuter: The manifold applications of repeat analysis on a genomic scale
-
REPuter: the manifold applications of repeat analysis on a genomic scale. Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R, Nucleic Acids Res 2001 29 22 4633 4642 10.1093/nar/29.22.4633 11713313 (Pubitemid 33095024)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.22
, pp. 4633-4642
-
-
Kurtz, S.1
Choudhuri, J.V.2
Ohlebusch, E.3
Schleiermacher, C.4
Stoye, J.5
Giegerich, R.6
-
52
-
-
33750028778
-
The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': Organization and phylogenetic relationships to other angiosperms
-
DOI 10.1186/1471-2229-6-21
-
The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms. Bausher MG, Singh ND, Lee SB, Jansen RK, Daniell H, BMC Plant Biol 2006 6 21 10.1186/1471-2229-6-21 17010212 (Pubitemid 44570355)
-
(2006)
BMC Plant Biology
, vol.6
, pp. 21
-
-
Bausher, M.G.1
Singh, N.D.2
Lee, S.-B.3
Jansen, R.K.4
Daniell, H.5
-
53
-
-
34547793573
-
Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes
-
DOI 10.1007/s00122-007-0567-4
-
Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes. Saski C, Lee SB, Fjellheim S, Guda C, Jansen RK, Luo H, Tomkins J, Rognli OA, Daniell H, Clarke JL, Theor Appl Genet 2007 115 4 571 590 10.1007/s00122-007- 0567-4 17534593 (Pubitemid 47228688)
-
(2007)
Theoretical and Applied Genetics
, vol.115
, Issue.4
, pp. 571-590
-
-
Saski, C.1
Lee, S.-B.2
Fjellheim, S.3
Guda, C.4
Jansen, R.K.5
Luo, H.6
Tomkins, J.7
Rognli, O.A.8
Daniell, H.9
Clarke, J.L.10
-
54
-
-
33745178174
-
The complete chloroplast genome sequence of Gossypium hirsutum: Organization and phylogenetic relationships to other angiosperms
-
DOI 10.1186/1471-2164-7-61
-
The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms. Lee SB, Kaittanis C, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H, BMC Genomics 2006 7 61 10.1186/1471-2164-7-61 16553962 (Pubitemid 44082048)
-
(2006)
BMC Genomics
, vol.7
, pp. 61
-
-
Lee, S.-B.1
Kaittanis, C.2
Jansen, R.K.3
Hostetler, J.B.4
Tallon, L.J.5
Town, C.D.6
Daniell, H.7
-
55
-
-
79957814250
-
High-throughput sequencing of six bamboo chloroplast genomes: Phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae)
-
10.1371/journal.pone.0020596 21655229
-
High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). Zhang YJ, Ma PF, Li DZ, PLoS One 2011 6 5 20596 10.1371/journal.pone.0020596 21655229
-
(2011)
PLoS One
, vol.6
, Issue.5
, pp. 520596
-
-
Zhang, Y.J.1
Ma, P.F.2
Li, D.Z.3
-
56
-
-
11144263232
-
Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: A comparative analysis of four monocot chloroplast genomes
-
DOI 10.1093/dnares/11.2.93
-
Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: A comparative analysis of four monocot chloroplast genomes. Asano T, Tsudzuki T, Takahashi S, Shimada H, Kadowaki K, DNA Res 2004 11 2 93 99 10.1093/dnares/11.2.93 15449542 (Pubitemid 40030349)
-
(2004)
DNA Research
, vol.11
, Issue.2
, pp. 93-99
-
-
Asano, T.1
Tsudzuki, T.2
Takahashi, S.3
Shimada, H.4
Kadowaki, K.-I.5
-
57
-
-
33847225091
-
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: Identification of divergent regions and categorization of shared repeats
-
DOI 10.3732/ajb.94.3.302
-
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: Identification of divergent regions and categorization of shared repeats. Timme RE, Kuehl JV, Boore JL, Jansen RK, Am J Bot 2007 94 3 302 312 10.3732/ajb.94.3.302 21636403 (Pubitemid 46955020)
-
(2007)
American Journal of Botany
, vol.94
, Issue.3
, pp. 302-312
-
-
Timme, R.E.1
Kuehl, J.V.2
Boore, J.L.3
Jansen, R.K.4
-
58
-
-
0037154314
-
Chloroplast evolution: Secondary symbiogenesis and multiple losses
-
DOI 10.1016/S0960-9822(01)00675-3, PII S0960982201006753
-
Chloroplast evolution: secondary symbiogenesis and multiple losses. Cavalier-Smith T, Curr Biol 2002 12 2 62 R64 10.1016/S0960-9822(01)00675-3 11818081 (Pubitemid 34099126)
-
(2002)
Current Biology
, vol.12
, Issue.2
-
-
Cavalier-Smith, T.1
-
59
-
-
33751258630
-
The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence
-
DOI 10.1007/s00299-006-0196-4
-
The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence. Chung HJ, Jung JD, Park HW, Kim JH, Cha HW, Min SR, Jeong WJ, Liu JR, Plant Cell Rep 2006 25 12 1369 1379 10.1007/s00299-006-0196-4 16835751 (Pubitemid 44786619)
-
(2006)
Plant Cell Reports
, vol.25
, Issue.12
, pp. 1369-1379
-
-
Chung, H.-J.1
Jung, J.D.2
Park, H.-W.3
Kim, J.-H.4
Cha, H.W.5
Min, S.R.6
Jeong, W.-J.7
Liu, J.R.8
-
60
-
-
1642464904
-
An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy
-
An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy. Freudenstein JV, van den Berg C, Goldman DH, Kores PJ, Molvray M, Chase MW, Am J Bot 2004 91 1 149 157 10.3732/ajb.91.1.149 21653371 (Pubitemid 38106674)
-
(2004)
American Journal of Botany
, vol.91
, Issue.1
, pp. 149-157
-
-
Freudenstein, J.V.1
Van Den Berg, C.2
Goldman, D.H.3
Kores, P.J.4
Molvray, M.5
Chase, M.W.6
-
61
-
-
53349160132
-
Rates of molecular evolution are linked to life history in flowering plants
-
10.1126/science.1163197 18832643
-
Rates of molecular evolution are linked to life history in flowering plants. Smith SA, Donoghue MJ, Science 2008 322 5898 86 89 10.1126/science. 1163197 18832643
-
(2008)
Science
, vol.322
, Issue.5898
, pp. 86-89
-
-
Smith, S.A.1
Donoghue, M.J.2
-
62
-
-
84989432221
-
Testing significance of incongruence
-
10.1111/j.1096-0031.1994.tb00181.x
-
Testing significance of incongruence. Farris JS, Kallersjo M, Kluge AG, Bult C, Cladistics 1994 10 3 315 319 10.1111/j.1096-0031.1994.tb00181.x
-
(1994)
Cladistics
, vol.10
, Issue.3
, pp. 315-319
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
63
-
-
0029468060
-
Constructing a significance test for incongruence
-
Constructing a significance test for incongruence. Farris JS, Kallersjo M, Kluge AG, Bult C, Syst Biol 1995 44 4 570 572
-
(1995)
Syst Biol
, vol.44
, Issue.4
, pp. 570-572
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
64
-
-
0035527390
-
Phylogeny of Saxifragales (angiosperms, eudicots): Analysis of a rapid, ancient radiation
-
10.1080/106351501753462821 12116635
-
Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation. Fishbein M, Hibsch-Jetter C, Soltis DE, Hufford L, Syst Biol 2001 50 6 817 847 10.1080/106351501753462821 12116635
-
(2001)
Syst Biol
, vol.50
, Issue.6
, pp. 817-847
-
-
Fishbein, M.1
Hibsch-Jetter, C.2
Soltis, D.E.3
Hufford, L.4
-
65
-
-
28944442228
-
How much data are needed to resolve a difficult phylogeny? Case study in Lamiales
-
10.1080/10635150500221028 16195214
-
How much data are needed to resolve a difficult phylogeny? Case study in Lamiales. Wortley AH, Rudall PJ, Harris DJ, Scotland RW, Syst Biol 2005 54 5 697 709 10.1080/10635150500221028 16195214
-
(2005)
Syst Biol
, vol.54
, Issue.5
, pp. 697-709
-
-
Wortley, A.H.1
Rudall, P.J.2
Harris, D.J.3
Scotland, R.W.4
-
66
-
-
80052008793
-
Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): Implication for DNA barcoding and population genetics
-
10.1139/g11-026 21793699
-
Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics. Kuang DY, Wu H, Wang YL, Gao LM, Zhang SZ, Lu L, Genome 2011 54 8 663 673 10.1139/g11-026 21793699
-
(2011)
Genome
, vol.54
, Issue.8
, pp. 663-673
-
-
Kuang, D.Y.1
Wu, H.2
Wang, Y.L.3
Gao, L.M.4
Zhang, S.Z.5
Lu, L.6
-
67
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
10.1101/gr.097261.109 20019144
-
De novo assembly of human genomes with massively parallel short read sequencing. Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, et al. Genome Res 2010 20 2 265 272 10.1101/gr.097261.109 20019144
-
(2010)
Genome Res
, vol.20
, Issue.2
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
Shi, Z.6
Li, Y.7
Li, S.8
Shan, G.9
Kristiansen, K.10
-
68
-
-
84863507534
-
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
-
10.1093/bioinformatics/bts199 22543367
-
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Meintjes P, Duran C, Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, et al. Bioinformatics 2012 28 12 1647 1649 10.1093/bioinformatics/bts199 22543367
-
(2012)
Bioinformatics
, vol.28
, Issue.12
, pp. 1647-1649
-
-
Meintjes, P.1
Duran, C.2
Kearse, M.3
Moir, R.4
Wilson, A.5
Stones-Havas, S.6
Cheung, M.7
Sturrock, S.8
Buxton, S.9
Cooper, A.10
-
69
-
-
10244240599
-
Automatic annotation of organellar genomes with DOGMA
-
DOI 10.1093/bioinformatics/bth352
-
Automatic annotation of organellar genomes with DOGMA. Wyman SK, Jansen RK, Boore JL, Bioinformatics 2004 20 17 3252 3255 10.1093/bioinformatics/bth352 15180927 (Pubitemid 39619219)
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3252-3255
-
-
Wyman, S.K.1
Jansen, R.K.2
Boore, J.L.3
-
70
-
-
33644873175
-
ChloroplastDB: The chloroplast genome database
-
10.1093/nar/gkj055 16381961
-
ChloroplastDB: the chloroplast genome database. Cui L, Veeraraghavan N, Richter A, Wall K, Jansen RK, Leebens-Mack J, Leebens-Mack J, Makalowska I, dePamphilis CW, Nucleic Acids Res 2006 34 692 D696 10.1093/nar/gkj055 16381961
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Cui, L.1
Veeraraghavan, N.2
Richter, A.3
Wall, K.4
Jansen, R.K.5
Leebens-Mack, J.6
Leebens-Mack, J.7
Makalowska, I.8
Depamphilis, C.W.9
-
71
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
DOI 10.1093/nar/25.5.955
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, Eddy SR, Nucleic Acids Res 1997 25 5 955 964 9023104 (Pubitemid 27298263)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
72
-
-
36048989002
-
OrganellarGenomeDRAW (OGDRAW): A tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
-
DOI 10.1007/s00294-007-0161-y
-
OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Lohse M, Drechsel O, Bock R, Curr Genet 2007 52 5-6 267 274 17957369 (Pubitemid 350090630)
-
(2007)
Current Genetics
, vol.52
, Issue.5-6
, pp. 267-274
-
-
Lohse, M.1
Drechsel, O.2
Bock, R.3
-
73
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
DOI 10.1093/nar/gki198
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment. Katoh K, Kuma K, Toh H, Miyata T, Nucleic Acids Res 2005 33 2 511 518 10.1093/nar/gki198 15661851 (Pubitemid 40360980)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.2
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.-I.2
Toh, H.3
Miyata, T.4
-
75
-
-
84877585896
-
Current protocols in bioinformatics / editoral board, Andreas D Baxevanis [et al.]
-
Malden, MA, United States: John Wiley & Sons, Inc. Chapter 6: Unit 6.4
-
Wilgenbusch JC, Swofford D, Inferring evolutionary trees with PAUP* Malden, MA, United States: John Wiley & Sons, Inc. Current protocols in bioinformatics / editoral board, Andreas D Baxevanis [et al.]. 2003 Chapter 6: Unit 6.4
-
(2003)
Inferring Evolutionary Trees with PAUP*
-
-
Wilgenbusch, J.C.1
Swofford, D.2
-
76
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
MODELTEST: testing the model of DNA substitution. Posada D, Crandall KA, Bioinformatics 1998 14 9 817 818 10.1093/bioinformatics/14.9.817 9918953 (Pubitemid 28552116)
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
77
-
-
84877581282
-
Current protocols in bioinformatics / editoral board, Andreas D Baxevanis [et al.]
-
Malden, MA, United States: John Wiley & Sons, Inc. Chapter 6: Unit 6.5
-
Posada D, Using MODELTEST and PAUP* to select a model of nucleotide substitution Malden, MA, United States: John Wiley & Sons, Inc. Current protocols in bioinformatics / editoral board, Andreas D Baxevanis [et al.]. 2003 Chapter 6: Unit 6.5
-
(2003)
Using MODELTEST and PAUP* to Select A Model of Nucleotide Substitution
-
-
Posada, D.1
-
78
-
-
84860109324
-
MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space
-
10.1093/sysbio/sys029 22357727
-
MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP, Syst Biol 2012 61 3 539 542 10.1093/sysbio/sys029 22357727
-
(2012)
Syst Biol
, vol.61
, Issue.3
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Van Der Mark, P.3
Ayres, D.L.4
Darling, A.5
Hohna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
79
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
DOI 10.1093/bioinformatics/btg180
-
MrBayes 3: Bayesian phylogenetic inference under mixed models. Ronquist F, Huelsenbeck JP, Bioinformatics 2003 19 12 1572 1574 10.1093/bioinformatics/ btg180 12912839 (Pubitemid 37038874)
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
80
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
10.1093/molbev/msr121 21546353
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, Mol Biol Evol 2011 28 10 2731 2739 10.1093/molbev/msr121 21546353
-
(2011)
Mol Biol Evol
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
81
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Edgar RC, Nucleic Acids Res 2004 32 5 1792 1797 10.1093/nar/gkh340 15034147 (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
|