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Volumn 6, Issue 8, 2014, Pages 2122-2128

Genetic convergence in the adaptation of dogs and humans to the high-altitude environment of the Tibetan Plateau

Author keywords

Convergence; EPAS1; High altitude adaptation; Tibetan village dog

Indexed keywords

BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; HEMOGLOBIN;

EID: 84912128089     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu162     Document Type: Article
Times cited : (98)

References (40)
  • 1
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei IA, et al. 2010. A method and server for predicting damaging missense mutations. Nat Methods. 7:248–249.
    • (2010) Nat Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1
  • 2
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. 2002. Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12: 1805–1814.
    • (2002) Genome Res , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 3
    • 84872045569 scopus 로고    scopus 로고
    • The genetic architecture of adaptations to high altitude in Ethiopia
    • Alkorta-Aranburu G, et al. 2012. The genetic architecture of adaptations to high altitude in Ethiopia. PLoS Genet. 8:e1003110.
    • (2012) PLoS Genet , vol.8
    • Alkorta-Aranburu, G.1
  • 4
    • 39749136156 scopus 로고    scopus 로고
    • Natural selection has driven population differentiation in modern humans
    • Barreiro LB, Laval G, Quach H, Patin E, Quintana-Murci L. 2008. Natural selection has driven population differentiation in modern humans. Nat Genet. 40:340–345.
    • (2008) Nat Genet , vol.40 , pp. 340-345
    • Barreiro, L.B.1    Laval, G.2    Quach, H.3    Patin, E.4    Quintana-Murci, L.5
  • 5
    • 34547468520 scopus 로고    scopus 로고
    • Two routes to functional adaptation: Tibetan and Andean high-altitude natives
    • Beall CM. 2007. Two routes to functional adaptation: Tibetan and Andean high-altitude natives. Proc Natl Acad Sci U S A. 104(Suppl. 1), 8655–8660.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 8655-8660
    • Beall, C.M.1
  • 6
    • 77954926596 scopus 로고    scopus 로고
    • Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders
    • Beall CM, et al. 2010. Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders. Proc Natl Acad Sci U S A. 107:11459–11464.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 11459-11464
    • Beall, C.M.1
  • 7
    • 78049419228 scopus 로고    scopus 로고
    • Identifying signatures of natural selection in Tibetan and Andean populations using dense genome scan data
    • Bigham A, et al. 2010. Identifying signatures of natural selection in Tibetan and Andean populations using dense genome scan data. PLoS Genet. 6:e1001116.
    • (2010) PLoS Genet , vol.6
    • Bigham, A.1
  • 9
    • 0346734132 scopus 로고    scopus 로고
    • Structural basis for PAS domain heterodimerization in the basic helix–loop–helix-PAS transcription factor hypoxia-inducible factor
    • Erbel PJ, Card PB, Karakuzu O, Bruick RK, Gardner KH. 2003. Structural basis for PAS domain heterodimerization in the basic helix–loop–helix-PAS transcription factor hypoxia-inducible factor. Proc Natl Acad Sci U S A. 100:15504–15509.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 15504-15509
    • Erbel, P.J.1    Card, P.B.2    Karakuzu, O.3    Bruick, R.K.4    Gardner, K.H.5
  • 10
    • 84905662414 scopus 로고    scopus 로고
    • Whole genome sequencing of six dog breeds from continuous altitudes reveals adaption to high-altitude hypoxia
    • Gou X, et al. 2014. Whole genome sequencing of six dog breeds from continuous altitudes reveals adaption to high-altitude hypoxia. Genome Res. 24:1308–1315.
    • (2014) Genome Res , vol.24 , pp. 1308-1315
    • Gou, X.1
  • 11
    • 84867776802 scopus 로고    scopus 로고
    • Genetic adaptation of the hypoxia-inducible factor pathway to oxygen pressure among Eurasian human populations
    • Ji LD, et al. 2012. Genetic adaptation of the hypoxia-inducible factor pathway to oxygen pressure among Eurasian human populations. Mol Biol Evol. 29:3359–3370.
    • (2012) Mol Biol Evol , vol.29 , pp. 3359-3370
    • Ji, L.D.1
  • 12
    • 35648953308 scopus 로고    scopus 로고
    • Efficient mapping of mendelian traits in dogs through genome-wide association
    • Karlsson EK, et al. 2007. Efficient mapping of mendelian traits in dogs through genome-wide association. Nat Genet. 39:1321–1328.
    • (2007) Nat Genet , vol.39 , pp. 1321-1328
    • Karlsson, E.K.1
  • 13
    • 72249095193 scopus 로고    scopus 로고
    • Principles of ligand binding within a completely buried cavity in HIF2alpha PAS-B
    • Key J, Scheuermann TH, Anderson PC, Daggett V, Gardner KH. 2009. Principles of ligand binding within a completely buried cavity in HIF2alpha PAS-B. J Am Chem Soc. 131:17647–17654.
    • (2009) J Am Chem Soc , vol.131 , pp. 17647-17654
    • Key, J.1    Scheuermann, T.H.2    Anderson, P.C.3    Daggett, V.4    Gardner, K.H.5
  • 14
    • 79751479288 scopus 로고    scopus 로고
    • The HIF pathway and erythrocytosis
    • Lee FS, Percy MJ. 2011. The HIF pathway and erythrocytosis. Annu Rev Pathol. 6:165–192.
    • (2011) Annu Rev Pathol , vol.6 , pp. 165-192
    • Lee, F.S.1    Percy, M.J.2
  • 15
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 16
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H, et al. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078–2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 17
    • 84899565331 scopus 로고    scopus 로고
    • Population variation revealed high altitude adaptation of Tibetan Mastiffs
    • Li Y, et al. 2014. Population variation revealed high altitude adaptation of Tibetan Mastiffs. Mol Biol Evol. 31:1200–1205.
    • (2014) Mol Biol Evol , vol.31 , pp. 1200-1205
    • Li, Y.1
  • 18
    • 84862811536 scopus 로고    scopus 로고
    • High genetic diversity of Tibetan Mastiffs revealed by mtDNA sequences
    • Li Y, Zhang YP. 2012. High genetic diversity of Tibetan Mastiffs revealed by mtDNA sequences. Chin Sci Bull. 57:1483–1487.
    • (2012) Chin Sci Bull , vol.57 , pp. 1483-1487
    • Li, Y.1    Zhang, Y.P.2
  • 19
    • 28644447707 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    • Lindblad-Toh K, Wade CM. 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438: 803–819.
    • (2005) Nature , vol.438 , pp. 803-819
    • Lindblad-Toh, K.1    Wade, C.M.2
  • 20
    • 84862183525 scopus 로고    scopus 로고
    • Oxygen transport by hemoglobin
    • Mairbaurl H, Weber RE. 2012. Oxygen transport by hemoglobin. Compr Physiol. 2:1463–1489.
    • (2012) Compr Physiol , vol.2 , pp. 1463-1489
    • Mairbaurl, H.1    Weber, R.E.2
  • 21
    • 1942435517 scopus 로고    scopus 로고
    • Canine and feline hematology reference values for the ADVIA 120 hematology system
    • Moritz A, Fickenscher Y, Meyer K, Failing K, Weiss DJ. 2004. Canine and feline hematology reference values for the ADVIA 120 hematology system. Vet Clin Pathol. 33:32–38.
    • (2004) Vet Clin Pathol , vol.33 , pp. 32-38
    • Moritz, A.1    Fickenscher, Y.2    Meyer, K.3    Failing, K.4    Weiss, D.J.5
  • 22
    • 84878935899 scopus 로고    scopus 로고
    • Epistasis among adaptive mutations in deer mouse hemoglobin
    • Natarajan C, et al. 2013. Epistasis among adaptive mutations in deer mouse hemoglobin. Science 340:1324–1327.
    • (2013) Science , vol.340 , pp. 1324-1327
    • Natarajan, C.1
  • 23
    • 70450227389 scopus 로고    scopus 로고
    • MtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves
    • Pang JF, et al. 2009. mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves. Mol Biol Evol. 26:2849–2864.
    • (2009) Mol Biol Evol , vol.26 , pp. 2849-2864
    • Pang, J.F.1
  • 24
    • 78751545966 scopus 로고    scopus 로고
    • Genetic variations in Tibetan populations and high-altitude adaptation at the Himalayas
    • Peng Y, et al. 2011. Genetic variations in Tibetan populations and high-altitude adaptation at the Himalayas. Mol Biol Evol. 28: 1075–1081.
    • (2011) Mol Biol Evol , vol.28 , pp. 1075-1081
    • Peng, Y.1
  • 25
    • 84890815387 scopus 로고    scopus 로고
    • Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds
    • Projecto-Garcia J, et al. 2013. Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds. Proc Natl Acad Sci U S A. 110:20669–20674.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 20669-20674
    • Projecto-Garcia, J.1
  • 26
    • 0035837267 scopus 로고    scopus 로고
    • Linkage disequilibrium in the human genome
    • Reich DE, et al. 2001. Linkage disequilibrium in the human genome. Nature 411:199–204.
    • (2001) Nature , vol.411 , pp. 199-204
    • Reich, D.E.1
  • 27
    • 2242463993 scopus 로고    scopus 로고
    • Genetic evidence for an East Asian origin of domestic dogs
    • Savolainen P, Zhang YP, Luo J, Lundeberg J, Leitner T. 2002. Genetic evidence for an East Asian origin of domestic dogs. Science 298: 1610–1613.
    • (2002) Science , vol.298 , pp. 1610-1613
    • Savolainen, P.1    Zhang, Y.P.2    Luo, J.3    Lundeberg, J.4    Leitner, T.5
  • 28
    • 84856022397 scopus 로고    scopus 로고
    • Genetic adaptation to high altitude in the Ethiopian highlands
    • Scheinfeldt LB, et al. 2012. Genetic adaptation to high altitude in the Ethiopian highlands. Genome Biol. 13:R1.
    • (2012) Genome Biol , vol.13 , pp. R1
    • Scheinfeldt, L.B.1
  • 29
    • 58849141619 scopus 로고    scopus 로고
    • Artificial ligand binding within the HIF2alpha PAS-B domain of the HIF2 transcription factor
    • Scheuermann TH, et al. 2009. Artificial ligand binding within the HIF2alpha PAS-B domain of the HIF2 transcription factor. Proc Natl Acad Sci U S A. 106:450–455.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 450-455
    • Scheuermann, T.H.1
  • 30
    • 77954319663 scopus 로고    scopus 로고
    • Genetic evidence for high-altitude adaptation in Tibet
    • Simonson TS, et al. 2010. Genetic evidence for high-altitude adaptation in Tibet. Science 329:72–75.
    • (2010) Science , vol.329 , pp. 72-75
    • Simonson, T.S.1
  • 31
    • 46249085097 scopus 로고    scopus 로고
    • Mechanisms of hemoglobin adaptation to high altitude hypoxia
    • Storz JF, Moriyama H. 2008. Mechanisms of hemoglobin adaptation to high altitude hypoxia. High Alt Med Biol. 9:148–157.
    • (2008) High Alt Med Biol , vol.9 , pp. 148-157
    • Storz, J.F.1    Moriyama, H.2
  • 32
    • 77954843627 scopus 로고    scopus 로고
    • Genetic differences in hemoglobin function between highland and lowland deer mice
    • Storz JF, Runck AM, Moriyama H, Weber RE, Fago A. 2010. Genetic differences in hemoglobin function between highland and lowland deer mice. J Exp Biol. 213:2565–2574.
    • (2010) J Exp Biol , vol.213 , pp. 2565-2574
    • Storz, J.F.1    Runck, A.M.2    Moriyama, H.3    Weber, R.E.4    Fago, A.5
  • 33
    • 70149102931 scopus 로고    scopus 로고
    • Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin
    • Storz JF, et al. 2009. Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin. Proc Natl Acad Sci U S A. 106:14450–14455.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 14450-14455
    • Storz, J.F.1
  • 34
    • 84878742437 scopus 로고    scopus 로고
    • The genomics of selection in dogs and the parallel evolution between dogs and humans
    • Wang GD, et al. 2013. The genomics of selection in dogs and the parallel evolution between dogs and humans. Nat Commun. 4:1860.
    • (2013) Nat Commun , vol.4 , pp. 1860
    • Wang, G.D.1
  • 35
    • 37049251873 scopus 로고
    • Transport of oxygen through hemoglobin solutions
    • Wang JH. 1961. Transport of oxygen through hemoglobin solutions. Science 133:1770–1771.
    • (1961) Science , vol.133 , pp. 1770-1771
    • Wang, J.H.1
  • 37
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir B, Cockerham C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.1    Cockerham, C.2
  • 38
    • 78751489036 scopus 로고    scopus 로고
    • A genome-wide search for signals of high-altitude adaptation in Tibetans
    • Xu S, et al. 2011. A genome-wide search for signals of high-altitude adaptation in Tibetans. Mol Biol Evol. 28:1003–1011.
    • (2011) Mol Biol Evol , vol.28 , pp. 1003-1011
    • Xu, S.1
  • 39
    • 77954319020 scopus 로고    scopus 로고
    • Sequencing of 50 human exomes reveals adaptation to high altitude
    • Yi X, et al. 2010. Sequencing of 50 human exomes reveals adaptation to high altitude. Science 329:75–78.
    • (2010) Science , vol.329 , pp. 75-78
    • Yi, X.1
  • 40
    • 75849116319 scopus 로고    scopus 로고
    • Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau
    • Zhao M, et al. 2009. Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau. Proc Natl Acad Sci U S A. 106:21230–21235.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 21230-21235
    • Zhao, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.