메뉴 건너뛰기




Volumn 16, Issue 11, 2014, Pages 3398-3415

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh

Author keywords

[No Author keywords available]

Indexed keywords

SULFATE; SULFIDE; SULFUR;

EID: 84912025634     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12388     Document Type: Article
Times cited : (77)

References (91)
  • 1
    • 50049126125 scopus 로고    scopus 로고
    • Resistance, resilience, and redundancy in microbial communities
    • Allison, S., and Martiny, J. (2008) Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci USA 105: 11512-11519.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 11512-11519
    • Allison, S.1    Martiny, J.2
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 4
    • 72449189146 scopus 로고    scopus 로고
    • Microbial species richness and metabolic activities in hypersaline microbial mats: insight into biosignature formation through lithification
    • Baumgartner, L.K., Dupraz, C., Buckley, D.H., Spear, J.R., Pace, N.R., and Visscher, P.T. (2009) Microbial species richness and metabolic activities in hypersaline microbial mats: insight into biosignature formation through lithification. Astrobiology 9: 861-874.
    • (2009) Astrobiology , vol.9 , pp. 861-874
    • Baumgartner, L.K.1    Dupraz, C.2    Buckley, D.H.3    Spear, J.R.4    Pace, N.R.5    Visscher, P.T.6
  • 5
    • 18844481026 scopus 로고    scopus 로고
    • A marine microbial consortium apparently mediating anaerobic oxidation of methane
    • Boetius, A., Ravenschlag, K., Schubert, C.J., Rickert, D., Widdel, F., Gieseke, A., etal. (2000) A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407: 623-626.
    • (2000) Nature , vol.407 , pp. 623-626
    • Boetius, A.1    Ravenschlag, K.2    Schubert, C.J.3    Rickert, D.4    Widdel, F.5    Gieseke, A.6
  • 6
    • 0028977377 scopus 로고
    • Development of a gold amalgam voltammetric microelectrode for the determination of dissolved Fe, Mn, O2, and S(-II) in porewaters of marine and freshwater sediments
    • Brendel, P.J., and Luther, G.W., III (1995) Development of a gold amalgam voltammetric microelectrode for the determination of dissolved Fe, Mn, O2, and S(-II) in porewaters of marine and freshwater sediments. Environ Sci Technol 29: 751-761.
    • (1995) Environ Sci Technol , vol.29 , pp. 751-761
    • Brendel, P.J.1    Luther, G.W.2
  • 7
    • 84870954651 scopus 로고    scopus 로고
    • Physiological and ecological aspects of sulfur isotope fractionation during bacterial sulfate reduction
    • Brüchert, V. (2004) Physiological and ecological aspects of sulfur isotope fractionation during bacterial sulfate reduction. Geol Soc Am Spec Pap 379: 1-16.
    • (2004) Geol Soc Am Spec Pap , vol.379 , pp. 1-16
    • Brüchert, V.1
  • 8
  • 9
    • 0027790151 scopus 로고
    • Biogeochemical cycles of carbon, sulfur, and free oxygen in a microbial mat
    • Canfield, D., and Des Marais, D. (1993) Biogeochemical cycles of carbon, sulfur, and free oxygen in a microbial mat. Geochim Cosmochim Acta 57: 3971-3984.
    • (1993) Geochim Cosmochim Acta , vol.57 , pp. 3971-3984
    • Canfield, D.1    Des Marais, D.2
  • 10
    • 0029663540 scopus 로고    scopus 로고
    • Late Proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies
    • Canfield, D., and Teske, A. (1996) Late Proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies. Nature 382: 127-132.
    • (1996) Nature , vol.382 , pp. 127-132
    • Canfield, D.1    Teske, A.2
  • 11
    • 34748844589 scopus 로고    scopus 로고
    • Biogeochemistry of Sulfur Isotopes
    • Valley, J.W., and Cole, D.R. (eds). Washington, DC: Mineralogical Society of America
    • Canfield, D.E. (2001) Biogeochemistry of Sulfur Isotopes. In Stable Isotope Geochemistry. Valley, J.W., and Cole, D.R. (eds). Washington, DC: Mineralogical Society of America, pp. 607-636.
    • (2001) Stable Isotope Geochemistry , pp. 607-636
    • Canfield, D.E.1
  • 12
    • 0031844505 scopus 로고    scopus 로고
    • Isotope fractionation and sulfur metabolism by pure and enrichment cultures of elemental sulfur-disproportionating bacteria
    • Canfield, D.E., Thamdrup, B., and Fleischer, S. (1998) Isotope fractionation and sulfur metabolism by pure and enrichment cultures of elemental sulfur-disproportionating bacteria. Limnol Oceanogr 43: 253-264.
    • (1998) Limnol Oceanogr , vol.43 , pp. 253-264
    • Canfield, D.E.1    Thamdrup, B.2    Fleischer, S.3
  • 14
    • 84944816274 scopus 로고
    • Spectrophotometric determination of hydrogen sulfide in natural waters
    • Cline, J.D. (1969) Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14: 454-458.
    • (1969) Limnol Oceanogr , vol.14 , pp. 454-458
    • Cline, J.D.1
  • 15
    • 0002042116 scopus 로고
    • Comparative N and S cycles: oxygenic photosynthesis, anoxygenic photosynthesis, and sulfate-reduction in cyanobacterial mats
    • Klug, M.J., and Reddy, C.A. (eds). Washington, DC: American Society for Microbiology Press
    • Cohen, Y. (1984) Comparative N and S cycles: oxygenic photosynthesis, anoxygenic photosynthesis, and sulfate-reduction in cyanobacterial mats. In Recent Advances in Microbial Ecology. Klug, M.J., and Reddy, C.A. (eds). Washington, DC: American Society for Microbiology Press, pp. 435-441.
    • (1984) Recent Advances in Microbial Ecology , pp. 435-441
    • Cohen, Y.1
  • 16
    • 50149099464 scopus 로고    scopus 로고
    • Inorganic sulfur compounds as electron donors in purple sulfur bacteria
    • Hell, R (ed.).
    • Dahl, C. (2008) Inorganic sulfur compounds as electron donors in purple sulfur bacteria. In Sulfur Metabolism in Phototrophic Organisms, 27. Hell, R (ed.). pp. 289-317.
    • (2008) Sulfur Metabolism in Phototrophic Organisms , vol.27 , pp. 289-317
    • Dahl, C.1
  • 17
    • 33749988249 scopus 로고    scopus 로고
    • Bacterial sulfur globules: occurrence, structure and metabolism
    • Shively, J.M. (ed.). Berlin, Germany: Springer
    • Dahl, C., and Prange, A. (2006) Bacterial sulfur globules: occurrence, structure and metabolism. In Inclusions in Prokaryotes. Shively, J.M. (ed.). Berlin, Germany: Springer, pp. 21-51.
    • (2006) Inclusions in Prokaryotes , pp. 21-51
    • Dahl, C.1    Prange, A.2
  • 18
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific Probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set
    • Daims, H., Brühl, A., Amann, R., Schleifer, K.-H., and Wagner, M. (1999) The domain-specific Probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 19
    • 84895751645 scopus 로고    scopus 로고
    • Phylosift: metagenome phylogeny for the masses
    • Darling, A.E., Jospin, G., Lowe, E., Matsen, F.A. IV, Bik, H., and Eisen, J.A. (2014) Phylosift: metagenome phylogeny for the masses. PeerJ 2: e243 http://dx.doi.org/10.7717/peerj.243
    • (2014) PeerJ , vol.2 , pp. e243
    • Darling, A.E.1    Jospin, G.2    Lowe, E.3    Matsen, F.A.4    Bik, H.5    Eisen, J.A.6
  • 21
    • 78650948077 scopus 로고    scopus 로고
    • Identification of diazotrophic microorganisms in marine sediment via fluorescence in situ hybridization coupled to nanoscale secondary ion mass spectrometry (FISH-NanoSIMS)
    • Dekas, A.E., and Orphan, V.J. (2011) Identification of diazotrophic microorganisms in marine sediment via fluorescence in situ hybridization coupled to nanoscale secondary ion mass spectrometry (FISH-NanoSIMS). Methods Enzymol 486: 281-305.
    • (2011) Methods Enzymol , vol.486 , pp. 281-305
    • Dekas, A.E.1    Orphan, V.J.2
  • 23
    • 61649103797 scopus 로고    scopus 로고
    • Spatial and temporal variability in a stratified hypersaline microbial mat community
    • Dillon, J.G., Miller, S., Bebout, B.M., Hullar, M., Pinel, N., and Stahl, D.A. (2009) Spatial and temporal variability in a stratified hypersaline microbial mat community. FEMS Microbiol Ecol 68: 46-58.
    • (2009) FEMS Microbiol Ecol , vol.68 , pp. 46-58
    • Dillon, J.G.1    Miller, S.2    Bebout, B.M.3    Hullar, M.4    Pinel, N.5    Stahl, D.A.6
  • 24
    • 0342960381 scopus 로고    scopus 로고
    • Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm
    • Dubilier, N., Mülders, C., Ferdelman, T., de Beer, D., Pernthaler, A., Klein, M., etal. (2001) Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm. Nature 411: 298-302.
    • (2001) Nature , vol.411 , pp. 298-302
    • Dubilier, N.1    Mülders, C.2    Ferdelman, T.3    de Beer, D.4    Pernthaler, A.5    Klein, M.6
  • 25
    • 44449137093 scopus 로고    scopus 로고
    • The microbial engines that drive Earth's biogeochemical cycles
    • Falkowski, P.G., Fenchel, T., and Delong, E.F. (2008) The microbial engines that drive Earth's biogeochemical cycles. Science 320: 1034-1039.
    • (2008) Science , vol.320 , pp. 1034-1039
    • Falkowski, P.G.1    Fenchel, T.2    Delong, E.F.3
  • 26
    • 0031452862 scopus 로고    scopus 로고
    • Sulfate reduction and methanogenesis in a Thioploca-dominated sediment off the coast of Chile
    • Ferdelman, T.G., Lee, C., Pantoja, S., Harder, J., Bebout, B.M., and Fossing, H. (1997) Sulfate reduction and methanogenesis in a Thioploca-dominated sediment off the coast of Chile. Geochim Cosmochim Acta 61: 3065-3079.
    • (1997) Geochim Cosmochim Acta , vol.61 , pp. 3065-3079
    • Ferdelman, T.G.1    Lee, C.2    Pantoja, S.3    Harder, J.4    Bebout, B.M.5    Fossing, H.6
  • 27
    • 43849094026 scopus 로고    scopus 로고
    • A paired sulfate-pyrite δ34S approach to understanding the evolution of the Ediacaran-Cambrian sulfur cycle
    • Fike, D.A., and Grotzinger, J.P. (2008) A paired sulfate-pyrite δ34S approach to understanding the evolution of the Ediacaran-Cambrian sulfur cycle. Geochim Cosmochim Acta 72: 2636-2648.
    • (2008) Geochim Cosmochim Acta , vol.72 , pp. 2636-2648
    • Fike, D.A.1    Grotzinger, J.P.2
  • 29
    • 46749149709 scopus 로고    scopus 로고
    • Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach
    • Fike, D.A., Gammon, C.L., Ziebis, W., and Orphan, V.J. (2008) Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach. The ISME journal 2: 749-759.
    • (2008) The ISME journal , vol.2 , pp. 749-759
    • Fike, D.A.1    Gammon, C.L.2    Ziebis, W.3    Orphan, V.J.4
  • 30
    • 69849103778 scopus 로고    scopus 로고
    • The effect of sulfate concentration on (sub)millimeter-scale sulfide δ34S in hypersaline cyanobacterial mats over the diurnal cycle
    • Fike, D.A., Finke, N., Zha, J., Blake, G., Hoehler, T.M., and Orphan, V.J. (2009) The effect of sulfate concentration on (sub)millimeter-scale sulfide δ34S in hypersaline cyanobacterial mats over the diurnal cycle. Geochim Cosmochim Acta 73: 6187-6204.
    • (2009) Geochim Cosmochim Acta , vol.73 , pp. 6187-6204
    • Fike, D.A.1    Finke, N.2    Zha, J.3    Blake, G.4    Hoehler, T.M.5    Orphan, V.J.6
  • 31
    • 45849140166 scopus 로고    scopus 로고
    • Microbiological disproportionation of inorganic sulfur compounds
    • Finster, K. (2008) Microbiological disproportionation of inorganic sulfur compounds. J Sulfur Chem 29: 281-292.
    • (2008) J Sulfur Chem , vol.29 , pp. 281-292
    • Finster, K.1
  • 32
    • 0031965087 scopus 로고    scopus 로고
    • Elemental sulfur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaerobic bacterium isolated from marine surface sediment
    • Finster, K., Liesack, W., and Thamdrup, B. (1998) Elemental sulfur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaerobic bacterium isolated from marine surface sediment. Appl Environ Microbiol 64: 119-125.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 119-125
    • Finster, K.1    Liesack, W.2    Thamdrup, B.3
  • 33
    • 84878315674 scopus 로고    scopus 로고
    • Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds
    • Finster, K.W., Kjeldsen, K.U., Kube, M., Reinhardt, R., Mussmann, M., Amann, R., and Schreiber, L. (2013) Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds. Stand Genomic Sci 8: 58-68.
    • (2013) Stand Genomic Sci , vol.8 , pp. 58-68
    • Finster, K.W.1    Kjeldsen, K.U.2    Kube, M.3    Reinhardt, R.4    Mussmann, M.5    Amann, R.6    Schreiber, L.7
  • 34
    • 0037829519 scopus 로고    scopus 로고
    • Sulfite-oxido-reductase is involved in the oxidation of sulfite in Desulfocapsa sulfoexigens during disproportionation of thiosulfate and elemental sulfur
    • Frederiksen, T.-M., and Finster, K. (2003) Sulfite-oxido-reductase is involved in the oxidation of sulfite in Desulfocapsa sulfoexigens during disproportionation of thiosulfate and elemental sulfur. Biodegradation 14: 189-198.
    • (2003) Biodegradation , vol.14 , pp. 189-198
    • Frederiksen, T.-M.1    Finster, K.2
  • 35
    • 0021274691 scopus 로고
    • Isotope effects associated with the anaerobic oxidation of sulfide by the purple photosynthetic bacterium, Chromatium vinosum
    • Fry, B., Gest, H., and Hayes, J.M. (1984) Isotope effects associated with the anaerobic oxidation of sulfide by the purple photosynthetic bacterium, Chromatium vinosum. FEMS Microbiol Lett 22: 283-287.
    • (1984) FEMS Microbiol Lett , vol.22 , pp. 283-287
    • Fry, B.1    Gest, H.2    Hayes, J.M.3
  • 36
    • 0021836056 scopus 로고
    • Isotope effects associated with the anaerobic oxidation of sulfite and thiosulfate by the photosynthetic bacterium, Chromatium vinosum
    • Fry, B., Gest, H., and Hayes, J.M. (1985) Isotope effects associated with the anaerobic oxidation of sulfite and thiosulfate by the photosynthetic bacterium, Chromatium vinosum. FEMS Microbiol Lett 27: 227-232.
    • (1985) FEMS Microbiol Lett , vol.27 , pp. 227-232
    • Fry, B.1    Gest, H.2    Hayes, J.M.3
  • 37
    • 81155125185 scopus 로고    scopus 로고
    • Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone
    • Fuchsman, C.A., Kirkpatrick, J.B., Brazelton, W.J., Murray, J.W., and Staley, J.T. (2011) Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone. FEMS Microbiol Ecol 78: 586-603.
    • (2011) FEMS Microbiol Ecol , vol.78 , pp. 586-603
    • Fuchsman, C.A.1    Kirkpatrick, J.B.2    Brazelton, W.J.3    Murray, J.W.4    Staley, J.T.5
  • 38
    • 0014367498 scopus 로고
    • On the ATP generation by Chromatium in darkness
    • van Gemerden, H. (1968) On the ATP generation by Chromatium in darkness. Archiv für Mikrobiologie 64: 118-124.
    • (1968) Archiv für Mikrobiologie , vol.64 , pp. 118-124
    • van Gemerden, H.1
  • 39
    • 0343920481 scopus 로고
    • Great Sippewissett Salt Marsh: a summary of projects carried out by students in the microbial ecology coure of the Marine Biological Laboratory, Woods Hole, during summers 1972-1981
    • Cohen, Y., Castenholz, R.W., and Halvorson, H.O. (eds). New York: Alan R. Liss
    • Gibson, J., Leadbetter, E., and Jannasch, H. (1984) Great Sippewissett Salt Marsh: a summary of projects carried out by students in the microbial ecology coure of the Marine Biological Laboratory, Woods Hole, during summers 1972-1981. In Microbial Mats: Stromatolites. Cohen, Y., Castenholz, R.W., and Halvorson, H.O. (eds). New York: Alan R. Liss, pp. 95-100.
    • (1984) Microbial Mats: Stromatolites , pp. 95-100
    • Gibson, J.1    Leadbetter, E.2    Jannasch, H.3
  • 40
    • 84856778052 scopus 로고    scopus 로고
    • Segmentation of multi-isotope imaging mass spectrometry data for semi-automatic detection of regions of interest
    • Gormanns, P., Reckow, S., Poczatek, J.C., Turck, C.W., and Lechene, C. (2012) Segmentation of multi-isotope imaging mass spectrometry data for semi-automatic detection of regions of interest. PLoS ONE 7: e30576.
    • (2012) PLoS ONE , vol.7 , pp. e30576
    • Gormanns, P.1    Reckow, S.2    Poczatek, J.C.3    Turck, C.W.4    Lechene, C.5
  • 41
    • 84874955138 scopus 로고    scopus 로고
    • Isotope fractionation by sulfate-reducing natural populations and the isotopic composition of sulfide in marine sediments
    • Habicht, K., and Canfield, D. (2001) Isotope fractionation by sulfate-reducing natural populations and the isotopic composition of sulfide in marine sediments. Geology 29: 555-558.
    • (2001) Geology , vol.29 , pp. 555-558
    • Habicht, K.1    Canfield, D.2
  • 42
    • 0032469241 scopus 로고    scopus 로고
    • Sulfur isotope fractionation during bacterial reduction and disproportionation of thiosulfate and sulfite
    • Habicht, K., Canfield, D., and Rethmeier, J. (1998) Sulfur isotope fractionation during bacterial reduction and disproportionation of thiosulfate and sulfite. Geochim Cosmochim Acta 62: 2585-2595.
    • (1998) Geochim Cosmochim Acta , vol.62 , pp. 2585-2595
    • Habicht, K.1    Canfield, D.2    Rethmeier, J.3
  • 43
    • 79952749405 scopus 로고    scopus 로고
    • Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins
    • Hansen, E.E., Lozupone, C.A., Rey, F.E., Wu, M., Guruge, J.L., Narra, A., etal. (2011) Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins. Proc Natl Acad Sci U S A 108: 4599-4606.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 4599-4606
    • Hansen, E.E.1    Lozupone, C.A.2    Rey, F.E.3    Wu, M.4    Guruge, J.L.5    Narra, A.6
  • 44
    • 79955432780 scopus 로고    scopus 로고
    • A cryptic sulfur cycle driven by iron in the methane zone of marine sediment (Aarhus Bay, Denmark)
    • Holmkvist, L., Ferdelman, T.G., and Jørgensen, B.B. (2011) A cryptic sulfur cycle driven by iron in the methane zone of marine sediment (Aarhus Bay, Denmark). Geochim Cosmochim Acta 75: 3581-3599.
    • (2011) Geochim Cosmochim Acta , vol.75 , pp. 3581-3599
    • Holmkvist, L.1    Ferdelman, T.G.2    Jørgensen, B.B.3
  • 45
    • 12844281171 scopus 로고    scopus 로고
    • Neoproterozoic sulfur isotopes, the evolution of microbial sulfur species, and the burial efficiency of sulfide as sedimentary pyrite
    • Hurtgen, M.T., Arthur, M.A., and Halverson, G.P. (2005) Neoproterozoic sulfur isotopes, the evolution of microbial sulfur species, and the burial efficiency of sulfide as sedimentary pyrite. Geology 33: 41.
    • (2005) Geology , vol.33 , pp. 41
    • Hurtgen, M.T.1    Arthur, M.A.2    Halverson, G.P.3
  • 46
    • 8344250319 scopus 로고    scopus 로고
    • An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments
    • Ishii, K., Mussmann, M., MacGregor, B.J., and Amann, R. (2004) An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments. FEMS Microbiol Ecol 50: 203-213.
    • (2004) FEMS Microbiol Ecol , vol.50 , pp. 203-213
    • Ishii, K.1    Mussmann, M.2    MacGregor, B.J.3    Amann, R.4
  • 48
    • 34447120847 scopus 로고
    • Microbiological fractionation of sulphur isotopes
    • Kaplan, I.R., and Rittenberg, S.C. (1964) Microbiological fractionation of sulphur isotopes. J Gen Microbiol 34: 195-212.
    • (1964) J Gen Microbiol , vol.34 , pp. 195-212
    • Kaplan, I.R.1    Rittenberg, S.C.2
  • 49
    • 0002125308 scopus 로고
    • The mechanism of the bacterial reduction of sulphate and of sulfite from isotope fractionation studies
    • Kemp, A.L.W., and Thode, H.G. (1968) The mechanism of the bacterial reduction of sulphate and of sulfite from isotope fractionation studies. Geochim Cosmochim Acta 32: 71-91.
    • (1968) Geochim Cosmochim Acta , vol.32 , pp. 71-91
    • Kemp, A.L.W.1    Thode, H.G.2
  • 51
    • 0033843651 scopus 로고    scopus 로고
    • A fast and simple turbidimetric method for the determination of sulfate in sulfate-reducing bacterial cultures
    • Kolmert, A., Wikstrom, P., and Hallberg, K.B. (2000) A fast and simple turbidimetric method for the determination of sulfate in sulfate-reducing bacterial cultures. J Microbiol Methods 41: 179-184.
    • (2000) J Microbiol Methods , vol.41 , pp. 179-184
    • Kolmert, A.1    Wikstrom, P.2    Hallberg, K.B.3
  • 53
    • 84879930489 scopus 로고    scopus 로고
    • Influence of sulfate reduction rates on the Phanerozoic sulfur isotope record
    • published ahead of print June 3, 2013
    • Leavitt, W.D., Halevy, I., Bradley, A.S., and Johnston, D.T. (2013) Influence of sulfate reduction rates on the Phanerozoic sulfur isotope record. Proc Natl Acad Sci USA published ahead of print June 3, 2013, doi: 10.1073/pnas.1218874110
    • (2013) Proc Natl Acad Sci USA
    • Leavitt, W.D.1    Halevy, I.2    Bradley, A.S.3    Johnston, D.T.4
  • 54
    • 50149098601 scopus 로고    scopus 로고
    • Evolution and ecology of microbes dissimilating sulfur compounds: insights from siroheme sulfite reductases
    • Dahl, C., and Friedrich, C.G. (eds). Berlin, Germany: Springer
    • Loy, A., Duller, S., and Wagner, M. (2008) Evolution and ecology of microbes dissimilating sulfur compounds: insights from siroheme sulfite reductases. In Microbial Sulfur Metabolism. Dahl, C., and Friedrich, C.G. (eds). Berlin, Germany: Springer, pp. 46-59.
    • (2008) Microbial Sulfur Metabolism , pp. 46-59
    • Loy, A.1    Duller, S.2    Wagner, M.3
  • 55
    • 58549102136 scopus 로고    scopus 로고
    • Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes
    • Loy, A., Duller, S., Baranyi, C., Mussmann, M., Ott, J., Sharon, I., etal. (2009) Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes. Environ Microbiol 11: 289-299.
    • (2009) Environ Microbiol , vol.11 , pp. 289-299
    • Loy, A.1    Duller, S.2    Baranyi, C.3    Mussmann, M.4    Ott, J.5    Sharon, I.6
  • 57
    • 34247592880 scopus 로고    scopus 로고
    • Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization
    • Lücker, S., Steger, D., Kjeldsen, K.U., MacGregor, B.J., Wagner, M., and Loy, A. (2007) Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization. J Microbiol Methods 69: 523-528.
    • (2007) J Microbiol Methods , vol.69 , pp. 523-528
    • Lücker, S.1    Steger, D.2    Kjeldsen, K.U.3    MacGregor, B.J.4    Wagner, M.5    Loy, A.6
  • 58
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions
    • Manz, W., Amann, R., Ludwig, W., Wagner, M., and Schleifer, K.-H. (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15: 593-600.
    • (1992) Syst Appl Microbiol , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 59
    • 77958610660 scopus 로고    scopus 로고
    • Pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
    • Matsen, F.A., Kodner, R.B., and Armbrust, E.V. (2010) Pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 11: 538.
    • (2010) BMC Bioinformatics , vol.11 , pp. 538
    • Matsen, F.A.1    Kodner, R.B.2    Armbrust, E.V.3
  • 61
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E.M., Kubal, M., etal. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5    Kubal, M.6
  • 62
  • 63
    • 0034156863 scopus 로고    scopus 로고
    • Characterization of the cys gene locus from Allochromatium vinosum indicates an unusual sulfate assimilation pathway
    • Neumann, S., Wynen, A., Truper, H.G., and Dahl, C. (2000) Characterization of the cys gene locus from Allochromatium vinosum indicates an unusual sulfate assimilation pathway. Mol Biol Rep 27: 27-33.
    • (2000) Mol Biol Rep , vol.27 , pp. 27-33
    • Neumann, S.1    Wynen, A.2    Truper, H.G.3    Dahl, C.4
  • 64
    • 72249104480 scopus 로고    scopus 로고
    • Microbial architecture of environmental sulfur processes: a novel syntrophic sulfur-metabolizing consortia
    • Norlund, K.L.I., Southam, G., Tyliszczak, T., Hu, Y., Karunakaran, C., Obst, M., etal. (2009) Microbial architecture of environmental sulfur processes: a novel syntrophic sulfur-metabolizing consortia. Environ Sci Technol 43: 8781-8786.
    • (2009) Environ Sci Technol , vol.43 , pp. 8781-8786
    • Norlund, K.L.I.1    Southam, G.2    Tyliszczak, T.3    Hu, Y.4    Karunakaran, C.5    Obst, M.6
  • 65
    • 0000159756 scopus 로고
    • Use of 'specific' inhibitors in biogeochemistry and microbial ecology
    • Marshall, K.C. (ed.). New York: Plenum Publishing
    • Oremland, R.S., and Capone, D.G. (1988) Use of 'specific' inhibitors in biogeochemistry and microbial ecology. In Advances in Microbial Ecology. Marshall, K.C. (ed.). New York: Plenum Publishing, pp. 285-383.
    • (1988) Advances in Microbial Ecology , pp. 285-383
    • Oremland, R.S.1    Capone, D.G.2
  • 66
    • 66349107635 scopus 로고    scopus 로고
    • Methods for unveiling cryptic microbial partnerships in nature
    • Orphan, V.J. (2009) Methods for unveiling cryptic microbial partnerships in nature. Curr Opin Microbiol 12: 231-237.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 231-237
    • Orphan, V.J.1
  • 68
    • 0033765453 scopus 로고    scopus 로고
    • Microbial interactions involving sulfur bacteria: implications for the ecology and evolution of bacterial communities
    • Overmann, J., and van Gemerden, H. (2000) Microbial interactions involving sulfur bacteria: implications for the ecology and evolution of bacterial communities. FEMS Microbiol Rev 24: 591-599.
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 591-599
    • Overmann, J.1    van Gemerden, H.2
  • 69
    • 0036186299 scopus 로고    scopus 로고
    • Phototrophic consortia: model systems for symbiotic interrelations between prokaryotes
    • Overmann, J., and Schubert, K. (2002) Phototrophic consortia: model systems for symbiotic interrelations between prokaryotes. Arch Microbiol 177: 201-208.
    • (2002) Arch Microbiol , vol.177 , pp. 201-208
    • Overmann, J.1    Schubert, K.2
  • 70
    • 0034789074 scopus 로고    scopus 로고
    • Raman spectroscopic and laser scanning confocal microscopic analysis of sulfur in living sulfur-precipitating marine bacteria
    • Pasteris, J.D., Freeman, J.J., and Goffredi, S.K. (2001) Raman spectroscopic and laser scanning confocal microscopic analysis of sulfur in living sulfur-precipitating marine bacteria. Chem Geol 180: 3-18.
    • (2001) Chem Geol , vol.180 , pp. 3-18
    • Pasteris, J.D.1    Freeman, J.J.2    Goffredi, S.K.3
  • 71
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    • Peng, Y., Leung, H.C., Yiu, S.M., and Chin, F.Y. (2012) IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28: 1420-1428.
    • (2012) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.2    Yiu, S.M.3    Chin, F.Y.4
  • 72
    • 80052662010 scopus 로고    scopus 로고
    • Reaction-diffusion model of nutrient uptake in a biofilm: theory and experiment
    • Petroff, A.P., Wu, T.D., Liang, B., Mui, J., Guerquin-Kern, J.L., Vali, H., etal. (2011) Reaction-diffusion model of nutrient uptake in a biofilm: theory and experiment. J Theor Biol 289: 90-95.
    • (2011) J Theor Biol , vol.289 , pp. 90-95
    • Petroff, A.P.1    Wu, T.D.2    Liang, B.3    Mui, J.4    Guerquin-Kern, J.L.5    Vali, H.6
  • 73
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2 - approximately maximum-likelihood trees for large alignments
    • Price, M.N., Dehal, P.S., and Arkin, A.P. (2010) FastTree 2 - approximately maximum-likelihood trees for large alignments. PLoS ONE 5: e9490.
    • (2010) PLoS ONE , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 75
    • 0033779175 scopus 로고    scopus 로고
    • Characterization, seasonal occurrence, and diel fluctuation of poly(hydroxyalkanoate) in photosynthetic microbial mats
    • Rothermich, M.M., Guerrero, R., Lenz, R.W., and Goodwin, S. (2000) Characterization, seasonal occurrence, and diel fluctuation of poly(hydroxyalkanoate) in photosynthetic microbial mats. Appl Environ Microbiol 66: 4279-4291.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4279-4291
    • Rothermich, M.M.1    Guerrero, R.2    Lenz, R.W.3    Goodwin, S.4
  • 76
    • 56949095970 scopus 로고    scopus 로고
    • Metabolism of inorganic sulfur compounds in purple bacteria
    • Hunter, C.N., Daldal, F., Thurnauer, M.C., and Beatty, J.T. (eds). The Netherlands: Springer
    • Sander, J., and Dahl, C. (2008) Metabolism of inorganic sulfur compounds in purple bacteria. In The Purple Phototrophic Bacteria. Hunter, C.N., Daldal, F., Thurnauer, M.C., and Beatty, J.T. (eds). The Netherlands: Springer, pp. 595-622.
    • (2008) The Purple Phototrophic Bacteria , pp. 595-622
    • Sander, J.1    Dahl, C.2
  • 77
    • 0036425986 scopus 로고    scopus 로고
    • Synergistic interactions in the microbial world
    • Schink, B. (2002) Synergistic interactions in the microbial world. Antonie Van Leeuwenhoek 81: 257-261.
    • (2002) Antonie Van Leeuwenhoek , vol.81 , pp. 257-261
    • Schink, B.1
  • 79
    • 0027184409 scopus 로고
    • Physiology of purple sulfur bacteria forming macroscopic aggregates in Great Sippewissett Salt Marsh, Massachusetts
    • Seitz, A.P., Nielsen, T.H., and Overmann, J. (1993) Physiology of purple sulfur bacteria forming macroscopic aggregates in Great Sippewissett Salt Marsh, Massachusetts. FEMS Microbiol Ecol 12: 225-235.
    • (1993) FEMS Microbiol Ecol , vol.12 , pp. 225-235
    • Seitz, A.P.1    Nielsen, T.H.2    Overmann, J.3
  • 80
    • 79959831682 scopus 로고    scopus 로고
    • Large sulfur isotope fractionation does not require disproportionation
    • Sim, M.S., Bosak, T., and Ono, S. (2011a) Large sulfur isotope fractionation does not require disproportionation. Science 333: 74-77.
    • (2011) Science , vol.333 , pp. 74-77
    • Sim, M.S.1    Bosak, T.2    Ono, S.3
  • 81
    • 79959716191 scopus 로고    scopus 로고
    • Effect of electron donors on the fractionation of sulfur isotopes by a marine Desulfovibrio sp
    • Sim, M.S., Ono, S., Donovan, K., Templer, S.P., and Bosak, T. (2011b) Effect of electron donors on the fractionation of sulfur isotopes by a marine Desulfovibrio sp. Geochim Cosmochim Acta 75: 4244-4259.
    • (2011) Geochim Cosmochim Acta , vol.75 , pp. 4244-4259
    • Sim, M.S.1    Ono, S.2    Donovan, K.3    Templer, S.P.4    Bosak, T.5
  • 82
    • 85040678971 scopus 로고    scopus 로고
    • How to overcome inter-electrode variability and instability to quantify dissolved oxygen, Fe(II), mn(II), and S(II) in undisturbed soils and sediments using voltammetry
    • Slowey, A., and Marvin-DiPasquale, M. (2012) How to overcome inter-electrode variability and instability to quantify dissolved oxygen, Fe(II), mn(II), and S(II) in undisturbed soils and sediments using voltammetry. Geochem Trans 13: 6.
    • (2012) Geochem Trans , vol.13 , pp. 6
    • Slowey, A.1    Marvin-DiPasquale, M.2
  • 83
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 84
    • 84855287323 scopus 로고    scopus 로고
    • Microbial metatranscriptomics in a permanent marine oxygen minimum zone
    • Stewart, F.J., Ulloa, O., and DeLong, E.F. (2012) Microbial metatranscriptomics in a permanent marine oxygen minimum zone. Environ Microbiol 14: 23-40.
    • (2012) Environ Microbiol , vol.14 , pp. 23-40
    • Stewart, F.J.1    Ulloa, O.2    DeLong, E.F.3
  • 85
    • 80052479893 scopus 로고    scopus 로고
    • Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
    • Swan, B.K., Martinez-Garcia, M., Preston, C.M., Sczyrba, A., Woyke, T., Lamy, D., etal. (2011) Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333: 1296-1300.
    • (2011) Science , vol.333 , pp. 1296-1300
    • Swan, B.K.1    Martinez-Garcia, M.2    Preston, C.M.3    Sczyrba, A.4    Woyke, T.5    Lamy, D.6
  • 87
    • 84874960833 scopus 로고    scopus 로고
    • Microscale observations of sulfate reduction: correlation of microbial activity with lithified micritic laminae in modern marine stromatolites
    • Visscher, P., Reid, R., and Bebout, B. (2000) Microscale observations of sulfate reduction: correlation of microbial activity with lithified micritic laminae in modern marine stromatolites. Geology 28: 919-922.
    • (2000) Geology , vol.28 , pp. 919-922
    • Visscher, P.1    Reid, R.2    Bebout, B.3
  • 88
    • 0027339723 scopus 로고
    • Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
    • Wallner, G., Amann, R., and Beisker, W. (1993) Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14: 136-143.
    • (1993) Cytometry , vol.14 , pp. 136-143
    • Wallner, G.1    Amann, R.2    Beisker, W.3
  • 89
    • 70350502063 scopus 로고    scopus 로고
    • Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones
    • Walsh, D.A., Zaikova, E., Howes, C.G., Song, Y.C., Wright, J.J., Tringe, S.G., etal. (2009) Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326: 578-582.
    • (2009) Science , vol.326 , pp. 578-582
    • Walsh, D.A.1    Zaikova, E.2    Howes, C.G.3    Song, Y.C.4    Wright, J.J.5    Tringe, S.G.6
  • 90
    • 84866772472 scopus 로고    scopus 로고
    • Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla
    • Wrighton, K.C., Thomas, B.C., Sharon, I., Miller, C.S., Castelle, C.J., VerBerkmoes, N.C., etal. (2012) Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science 337: 1661-1665.
    • (2012) Science , vol.337 , pp. 1661-1665
    • Wrighton, K.C.1    Thomas, B.C.2    Sharon, I.3    Miller, C.S.4    Castelle, C.J.5    VerBerkmoes, N.C.6
  • 91
    • 57749169273 scopus 로고    scopus 로고
    • Fractionation of multiple sulfur isotopes during phototrophic oxidation of sulfide and elemental sulfur by a green sulfur bacterium
    • Zerkle, A.L., Farquhar, J., Johnston, D.T., Cox, R.P., and Canfield, D.E. (2009) Fractionation of multiple sulfur isotopes during phototrophic oxidation of sulfide and elemental sulfur by a green sulfur bacterium. Geochim Cosmochim Acta 73: 291-306.
    • (2009) Geochim Cosmochim Acta , vol.73 , pp. 291-306
    • Zerkle, A.L.1    Farquhar, J.2    Johnston, D.T.3    Cox, R.P.4    Canfield, D.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.