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Volumn 8, Issue 1, 2013, Pages 58-68

Complete genome sequence of desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds

Author keywords

Marine; Sediment; Sulfite; Sulfur disproportionation; Sulfur cycle; Thiosulfate

Indexed keywords

SULFUR DERIVATIVE;

EID: 84878315674     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.3777412     Document Type: Article
Times cited : (59)

References (46)
  • 1
    • 0023251083 scopus 로고
    • A novel type of energy me-tabolism involving fermentation of inorganic sul-phur compounds
    • PubMed
    • Bak F, Cypionka H. A novel type of energy me-tabolism involving fermentation of inorganic sul-phur compounds. Nature 1987; 326:891-892.PubMed http://dx.doi.org/10.1038/326891a0
    • (1987) Nature , vol.326 , pp. 891-892
    • Bak, F.1    Cypionka, H.2
  • 2
    • 0031965087 scopus 로고    scopus 로고
    • Elemental sul-fur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaer-obic bacterium isolated from marine surface sed-iment
    • PubMed
    • Finster K, Liesack W, Thamdrup B. Elemental sul-fur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaer-obic bacterium isolated from marine surface sed-iment. Appl Environ Microbiol 1998; 64:119-125. PubMed
    • (1998) Appl Environ Microbiol , vol.64 , pp. 119-125
    • Finster, K.1    Liesack, W.2    Thamdrup, B.3
  • 3
    • 0027341049 scopus 로고
    • Bacte-rial disproportionation of elemental sulfur cou-pled to chemical reduction of iron or manganese
    • Pub-Med
    • Thamdrup B, Finster K, Hansen JW, Bak F. Bacte-rial disproportionation of elemental sulfur cou-pled to chemical reduction of iron or manganese. Appl Environ Microbiol 1993; 59:101-108. Pub-Med
    • (1993) Appl Environ Microbiol , vol.59 , pp. 101-108
    • Thamdrup, B.1    Finster, K.2    Hansen, J.W.3    Bak, F.4
  • 4
    • 46749149709 scopus 로고    scopus 로고
    • Mi-cron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: A paired nanoSIMS and CARD-FISH approach
    • PubMed
    • Fike DA, Gammon CL, Ziebis W, Orphan VJ. Mi-cron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach. ISME J 2008; 2:749-759. PubMed http://dx.doi.org/10.1038/ismej.2008.39
    • (2008) ISME J , vol.2 , pp. 749-759
    • Fike, D.A.1    Gammon, C.L.2    Ziebis, W.3    Orphan, V.J.4
  • 5
    • 0025198697 scopus 로고
    • A thiosulfate shunt in the sulfur cycle of marine sediments
    • PubMed
    • Jørgensen BB. A thiosulfate shunt in the sulfur cycle of marine sediments. Science 1990; 249:152-154. PubMed http://dx.doi.org/10.1126/science.249.4965.152
    • (1990) Science , vol.249 , pp. 152-154
    • Jørgensen, B.B.1
  • 6
    • 0031844505 scopus 로고    scopus 로고
    • Isotope Fractionation and Sulfur Metabolism by Pure and Enrichment Cultures of Elemental Sulfur-Disproportionating Bacteria
    • Canfield DE, Thamdrup B, Fleischer S. Isotope Fractionation and Sulfur Metabolism by Pure and Enrichment Cultures of Elemental Sulfur-Disproportionating Bacteria. Limnol Oceanogr 1998; 43:253-264. http://dx.doi.org/10.4319/lo.1998.43.2.0253
    • (1998) Limnol Oceanogr , vol.43 , pp. 253-264
    • Canfield, D.E.1    Thamdrup, B.2    Fleischer, S.3
  • 7
    • 34548687408 scopus 로고    scopus 로고
    • Early archaean microorganisms preferred elemental sulfur, not sulfate
    • PubMed
    • Philippot P, Van Zuilen M, Lepot K, Thomazo C, Farquhar J, Van Kranendonk MJ. Early archaean microorganisms preferred elemental sulfur, not sulfate. Science 2007; 317:1534-1537. PubMed http://dx.doi.org/10.1126/science.1145861
    • (2007) Science , vol.317 , pp. 1534-1537
    • Philippot, P.1    van Zuilen, M.2    Lepot, K.3    Thomazo, C.4    Farquhar, J.5    van Kranendonk, M.J.6
  • 8
    • 45849140166 scopus 로고    scopus 로고
    • Microbiological disproportionation of inorganic sulfur compounds
    • Finster K. Microbiological disproportionation of inorganic sulfur compounds. J Sulfur Chem 2008; 29:281-292. http://dx.doi.org/10.1080/17415990802105770
    • (2008) J Sulfur Chem , vol.29 , pp. 281-292
    • Finster, K.1
  • 10
    • 1842689010 scopus 로고    scopus 로고
    • The transformation of inorganic sulfur compounds and the assimilation of organic and inorganic carbon by the sulfur disproportionating bacterium
    • PubMed
    • Frederiksen TM, Finster K. The transformation of inorganic sulfur compounds and the assimilation of organic and inorganic carbon by the sulfur disproportionating bacterium Desulfocapsa sulfoexigens. Antonie van Leeuwenhoek 2004; 85:141-149. PubMed http://dx.doi.org/10.1023/B:ANTO.0000020153.82679.f4
    • (2004) Desulfocapsa Sulfoexigens. Antonie Van Leeuwenhoek , vol.85 , pp. 141-149
    • Frederiksen, T.M.1    Finster, K.2
  • 11
    • 0037829519 scopus 로고    scopus 로고
    • Sulfite-oxido-reductase is involved in the oxidation of sulfite in Desulfocapsa sulfoexigens during disproportiona-tion of thiosulfate and elemental sulfur
    • PubMed
    • Frederiksen TM, Finster K. Sulfite-oxido-reductase is involved in the oxidation of sulfite in Desulfocapsa sulfoexigens during disproportiona-tion of thiosulfate and elemental sulfur. Biodegra-dation 2003; 14:189-198. PubMed http://dx.doi.org/10.1023/A:1024255830925
    • (2003) Biodegra-dation , vol.14 , pp. 189-198
    • Frederiksen, T.M.1    Finster, K.2
  • 12
    • 0029813330 scopus 로고    scopus 로고
    • Disproportionation of inorganic sulfur com-pounds by the sulfate-reducing bacterium Desulfocapsa thiozymogenes gen. nov., sp. nov
    • Janssen PH, Schuhmann A, Bak F, Liesack W. Disproportionation of inorganic sulfur com-pounds by the sulfate-reducing bacterium Desulfocapsa thiozymogenes gen. nov., sp. nov. Arch Microbiol 1996; 166:184-192. http://dx.doi.org/10.1007/s002030050374
    • (1996) Arch Microbiol , vol.166 , pp. 184-192
    • Janssen, P.H.1    Schuhmann, A.2    Bak, F.3    Liesack, W.4
  • 13
    • 0034278114 scopus 로고    scopus 로고
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM, PubMed
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Int J Syst Evol Microbiol 2000; 50:1699-1700. PubMed http://dx.doi.org/10.1099/00207713-50-5-1699
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1699-1700
  • 15
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the do-mains Archaea, Bacteria, and Eucarya
    • PubMed
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the do-mains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed http://dx.doi.org/10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 16
    • 33646193540 scopus 로고    scopus 로고
    • Phylum XIV. Proteobacteria phyl. nov
    • In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Second Edition Part B, Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Phylum XIV. Proteobacteria phyl. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B, Springer, New York, 2005, p. 1
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 17
    • 33947305555 scopus 로고    scopus 로고
    • Class IV. Deltaproteobacteria class. nov
    • In: Garrity GM, Brenner DJ, Krieg NR, Staley JT, editors, Second Edi-tion Part B. New York: Springer
    • Kuever J, Rainey FA, Widdel F. Class IV. Deltaproteobacteria class. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT, editors. Bergey's Manual of Sys-tematic Bacteriology, Second Edi-tion, Volume 2, Part B. New York: Springer; 2005. p 922-1144.
    • (2005) Bergey's Manual of Sys-tematic Bacteriology , vol.2 , pp. 922-1144
    • Kuever, J.1    Rainey, F.A.2    Widdel, F.3
  • 18
    • 33644852672 scopus 로고    scopus 로고
    • List of new names and new combinations previously effectively, but not validly, published
    • Validation List No. 107, PubMed
    • Validation List No. 107. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 2006; 56:1-6. PubMed http://dx.doi.org/10.1099/ijs.0.64188-0
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1-6
  • 19
    • 19544364328 scopus 로고    scopus 로고
    • Order III. Desulfobacterales ord. nov
    • In: Garrity GM, Bren-ner DJ, Krieg NR, Staley JT, editors, Second Edi-tion Part B. New York: Springer
    • Kuever J, Rainey FA, Widdel F. Order III. Desulfobacterales ord. nov. In: Garrity GM, Bren-ner DJ, Krieg NR, Staley JT, editors. Bergey's Manual of Sys-tematic Bacteriology, Second Edi-tion, Volume 2, Part B. New York: Springer; 2005. p 959-1002.
    • (2005) Bergey's Manual of Sys-tematic Bacteriology, , vol.2 , pp. 959-1002
    • Kuever, J.1    Rainey, F.A.2    Widdel, F.3
  • 20
    • 19544364328 scopus 로고    scopus 로고
    • Widdel F. Desulfobulbus Widdel 1981, 382 VP (Effective publication: Widdel 1980, 374)
    • Krieg N, Garrity G, Staley J, Boone D, Vos P, Goodfellow M, Rainey F, Schleifer K-H, editors. Bergey's Manual of Systematic Bacteriology: Springer US
    • Kuever J, Rainey F, Widdel F. Desulfobulbus Widdel 1981, 382 VP (Effective publication: Widdel 1980, 374). In: Brenner D, Krieg N, Garrity G, Staley J, Boone D, Vos P, Goodfellow M, Rainey F, Schleifer K-H, editors. Bergey's Manual of Systematic Bacteriology: Springer US; 2005. p 988-992.
    • (2005) Brenner D , pp. 988-992
    • Kuever, J.1    Rainey, F.2
  • 21
    • 19544364328 scopus 로고    scopus 로고
    • Desulfobulbaceae fam. nov
    • In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Second Edi-tion Part C, Springer, New York
    • Kuever J, Rainey FA, Widdel F. Family II. Desulfobulbaceae fam. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edi-tion, Volume 2, Part C, Springer, New York, 2005, p. 988.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 988
    • Kuever, J.1    Rainey, F.A.2    Widdel, F.3    Family, I.I.4
  • 22
    • 0008957992 scopus 로고    scopus 로고
    • Validation of the publica-tion of new names and new combinations previ-ously effectively published outside the IJSB
    • Validation List no. 61
    • Validation List no. 61. Validation of the publica-tion of new names and new combinations previ-ously effectively published outside the IJSB. Int J Syst Bacteriol 1997; 47:601-602. http://dx.doi.org/10.1099/00207713-47-2-601
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 601-602
  • 23
    • 0034278114 scopus 로고    scopus 로고
    • Validation List no. 76
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM, PubMed
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Validation List no. 76. Int J Syst Evol Microbiol 2000; 50:1699-1700. PubMed http://dx.doi.org/10.1099/00207713-50-5-1699
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1699-1700
  • 24
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood-based infer-ence of large phylogenetic trees
    • PubMed
    • Stamatakis A, Ludwig T, Meier H. RAxML-III: a fast program for maximum likelihood-based infer-ence of large phylogenetic trees. Bioinformatics 2005; 21:456-463. PubMed http://dx.doi.org/10.1093/bioinformatics/bti191
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 26
    • 4344713183 scopus 로고    scopus 로고
    • The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments
    • PubMed
    • Rabus R, Ruepp A, Frickey T, Rattei T, Fartmann B, Stark M, Bauer M, Zibat A, Lombardot T, Becker I, et al. The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments. Environ Microbiol 2004; 6:887-902. PubMed http://dx.doi.org/10.1111/j.1462-2920.2004.00665.x
    • (2004) Environ Microbiol , vol.6 , pp. 887-902
    • Rabus, R.1    Ruepp, A.2    Frickey, T.3    Rattei, T.4    Fartmann, B.5    Stark, M.6    Bauer, M.7    Zibat, A.8    Lombardot, T.9    Becker, I.10
  • 27
    • 69949116874 scopus 로고    scopus 로고
    • IMG ER: A system for microbial genome annotation expert review and curation
    • PubMed
    • Markowitz VM, Mavromatis K, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 2009; 25:2271-2278. PubMed http://dx.doi.org/10.1093/bioinformatics/btp393
    • (2009) Bioinformatics , vol.25 , pp. 2271-2278
    • Markowitz, V.M.1    Mavromatis, K.2    Ivanova, N.N.3    Chen, I.M.A.4    Chu, K.5    Kyrpides, N.C.6
  • 28
    • 34447644810 scopus 로고    scopus 로고
    • CRISPR Recognition Tool (CRT): A tool for automatic detection of clus-tered regularly interspaced palindromic repeats
    • PubMed
    • Bland C, Ramsey T, Sabree F, Lowe M, Brown K, Kyrpides N, Hugenholtz P. CRISPR Recognition Tool (CRT): a tool for automatic detection of clus-tered regularly interspaced palindromic repeats. BMC Bioinformatics 2007; 8:209. PubMed http://dx.doi.org/10.1186/1471-2105-8-209
    • (2007) BMC Bioinformatics , vol.8 , pp. 209
    • Bland, C.1    Ramsey, T.2    Sabree, F.3    Lowe, M.4    Brown, K.5    Kyrpides, N.6    Hugenholtz, P.7
  • 30
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A Program for improved detection of transfer RNA genes in ge-nomic sequence
    • Lowe TM, Eddy SR. tRNAscan-SE: A Program for improved detection of transfer RNA genes in ge-nomic sequence. Nucleic Acids Research 1997;25(5):0955-964.
    • (1997) Nucleic Acids Research , vol.25 , Issue.5 , pp. 0955-0964
    • Lowe, T.M.1    Eddy, S.R.2
  • 32
    • 77952299957 scopus 로고    scopus 로고
    • Prodigal: Prokaryotic gene recogni-tion and translation initiation site identification
    • PubMed
    • Hyatt D, Chen GL, LoCascio P, Land M, Larimer F, Hauser L. Prodigal: prokaryotic gene recogni-tion and translation initiation site identification. BMC Bioinformatics 2010; 11:119. PubMed http://dx.doi.org/10.1186/1471-2105-11-119
    • (2010) BMC Bioinformatics , vol.11 , pp. 119
    • Hyatt, D.1    Chen, G.L.2    Locascio, P.3    Land, M.4    Larimer, F.5    Hauser, L.6
  • 33
    • 0019959664 scopus 로고
    • Studies on dissimilatory sul-fate-reducing bacteria that decompose fatty acids II. Incomplete oxidation of propionate by Desulfobulbus propionicus gen. nov., sp. nov
    • Widdel F, Pfennig N. Studies on dissimilatory sul-fate-reducing bacteria that decompose fatty acids II. Incomplete oxidation of propionate by Desulfobulbus propionicus gen. nov., sp. nov. Arch Microbiol 1982; 131:360-365. http://dx.doi.org/10.1007/BF00411187
    • (1982) Arch Microbiol , vol.131 , pp. 360-365
    • Widdel, F.1    Pfennig, N.2
  • 34
    • 80051916758 scopus 로고    scopus 로고
    • Revisiting the dissimilatory sulfate reduction pathway
    • PubMed
    • Bradley AS, Leavitt WD, Johnston DT. Revisiting the dissimilatory sulfate reduction pathway. Geobiology 2011; 9:446-457. PubMed
    • (2011) Geobiology , vol.9 , pp. 446-457
    • Bradley, A.S.1    Leavitt, W.D.2    Johnston, D.T.3
  • 37
    • 0000159756 scopus 로고
    • Use of specific inhibitors in biogeochemistry and microbial ecology
    • Oremland R, Capone D. Use of specific inhibitors in biogeochemistry and microbial ecology. Adv Microb Ecol 1988; 10:285-383. http://dx.doi.org/10.1007/978-1-4684-5409-3_8
    • (1988) Adv Microb Ecol , vol.10 , pp. 285-383
    • Oremland, R.1    Capone, D.2
  • 38
    • 0026052565 scopus 로고
    • Enzymology of the Ace-tyl-CoA pathway of CO2 fixation
    • PubMed
    • Ragsdale SW, Wood HG. Enzymology of the Ace-tyl-CoA pathway of CO2 fixation. Crit Rev Biochem Mol Biol 1991; 26:261-300. PubMed http://dx.doi.org/10.3109/10409239109114070
    • (1991) Crit Rev Biochem Mol Biol , vol.26 , pp. 261-300
    • Ragsdale, S.W.1    Wood, H.G.2
  • 39
    • 0001908147 scopus 로고
    • Oxidative and re-ductive acetyl CoA/carbon monoxide dehydro-genase pathway in Desulfobacterium autotrophicum - 1. Characterization and metabol-ic function of the cellular tetrahydropterin
    • Länge S, Scholtz R, Fuchs G. Oxidative and re-ductive acetyl CoA/carbon monoxide dehydro-genase pathway in Desulfobacterium autotrophicum - 1. Characterization and metabol-ic function of the cellular tetrahydropterin. Arch Microbiol 1988; 151:77-83. http://dx.doi.org/10.1007/BF00444673
    • (1988) Arch Microbiol , vol.151 , pp. 77-83
    • Länge, S.1    Scholtz, R.2    Fuchs, G.3
  • 40
    • 0023726308 scopus 로고
    • Citric-acid cycle, 50 years on
    • PubMed
    • Thauer RK. Citric-acid cycle, 50 years on. Eur J Biochem 1988; 176:497-508. PubMed http://dx.doi.org/10.1111/j.1432-1033.1988.tb14307.x
    • (1988) Eur J Biochem , vol.176 , pp. 497-508
    • Thauer, R.K.1
  • 41
    • 0022991903 scopus 로고
    • Ausubel F. Regulation of nitrogen fixation genes
    • PubMed
    • Gussin G, Ronson C, Ausubel F. Regulation of nitrogen fixation genes. Annu Rev Genet 1986; 20:567-591. PubMed http://dx.doi.org/10.1146/annurev.ge.20.120186.003031
    • (1986) Annu Rev Genet , vol.20 , pp. 567-591
    • Gussin, G.1    Ronson, C.2
  • 42
    • 32544436628 scopus 로고    scopus 로고
    • The as-similatory nitrate reduction system of the photo-trophic bacterium Rhodobacter capsulatus E1F1
    • PubMed
    • Pino C, Olmo-Mira F, Cabello P, Martnez-Luque M, Castillo F, Roldn M, Moreno-Vivin C. The as-similatory nitrate reduction system of the photo-trophic bacterium Rhodobacter capsulatus E1F1. Biochem Soc Trans 2006; 34:127-129. PubMed http://dx.doi.org/10.1042/BST0340127
    • (2006) Biochem Soc Trans , vol.34 , pp. 127-129
    • Pino, C.1    Olmo-Mira, F.2    Cabello, P.3    Martnez-Luque, M.4    Castillo, F.5    Roldn, M.6    Moreno-Vivin, C.7
  • 43
    • 0033758905 scopus 로고    scopus 로고
    • Oxygen Respiration by Desulfovibrio Species
    • PubMed
    • Cypionka H. Oxygen Respiration by Desulfovibrio Species. Annu Rev Microbiol 2000; 54:827-848. PubMed http://dx.doi.org/10.1146/annurev.micro.54.1.827
    • (2000) Annu Rev Microbiol , vol.54 , pp. 827-848
    • Cypionka, H.1
  • 44
    • 0000696097 scopus 로고
    • Glutathione - General review of mechanisms of action
    • In: Dol-phin D, Poulsen R, Avicmovic, editors, New York: Wiley
    • Mannervik B, Carlberg I, Larson K. Glutathione - General review of mechanisms of action. In: Dol-phin D, Poulsen R, Avicmovic, editors. Coen-zymes and Cofactors IIIA. New York: Wiley; 1989. p 475-516.
    • (1989) Coen-zymes and Cofactors IIIA , pp. 475-516
    • Mannervik, B.1    Carlberg, I.2    Larson, K.3
  • 45
    • 79951852204 scopus 로고    scopus 로고
    • Signal pro-cessing in complex chemotaxis pathways
    • PubMed
    • Porter SL, Wadhams GH, Armitage JP. Signal pro-cessing in complex chemotaxis pathways. Nat Rev Microbiol 2011; 9:153-165. PubMed http://dx.doi.org/10.1038/nrmicro2505
    • (2011) Nat Rev Microbiol , vol.9 , pp. 153-165
    • Porter, S.L.1    Wadhams, G.H.2    Armitage, J.P.3
  • 46
    • 33748874852 scopus 로고    scopus 로고
    • From the origin of species to the origin of bacterial flagella
    • PubMed
    • Pallen MJ, Matzke NJ. From the origin of species to the origin of bacterial flagella. Nat Rev Microbiol 2006; 4:784-790. PubMed http://dx.doi.org/10.1038/nrmicro1493
    • (2006) Nat Rev Microbiol , vol.4 , pp. 784-790
    • Pallen, M.J.1    Matzke, N.J.2


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