메뉴 건너뛰기




Volumn 10, Issue 2, 2014, Pages 241-249

Global metabolomics characterization of bacteria: pre-analytical treatments and profiling

Author keywords

Bacteria; Metabolomics; NMR; Pre analytical treatments; Standard operating procedure

Indexed keywords

LIQUID NITROGEN;

EID: 84911884349     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-013-0571-4     Document Type: Article
Times cited : (21)

References (36)
  • 2
    • 84856252543 scopus 로고    scopus 로고
    • Deconvolution of chemical mixtures with high complexity by NMR consensus trace clustering
    • COI: 1:CAS:528:DC%2BC3MXhtV2nt73O, PID: 21848333
    • Bingol, K., & Bruschweiler, R. (2011). Deconvolution of chemical mixtures with high complexity by NMR consensus trace clustering. Analytical Chemistry,83, 7412–7417.
    • (2011) Analytical Chemistry , vol.83 , pp. 7412-7417
    • Bingol, K.1    Bruschweiler, R.2
  • 3
    • 34249088019 scopus 로고    scopus 로고
    • Sampling for metabolome analysis of microorganisms
    • COI: 1:CAS:528:DC%2BD2sXjvFKgtr0%3D, PID: 17411014
    • Bolten, C. J., Kiefer, P., Letisse, F., Portais, J. C., & Wittmann, C. (2007). Sampling for metabolome analysis of microorganisms. Analytical Chemistry,79, 3843–3849.
    • (2007) Analytical Chemistry , vol.79 , pp. 3843-3849
    • Bolten, C.J.1    Kiefer, P.2    Letisse, F.3    Portais, J.C.4    Wittmann, C.5
  • 4
    • 84856966742 scopus 로고    scopus 로고
    • NMR analysis of metabolic responses to extreme conditions of the temperature-dependent coral pathogen Vibrio coralliilyticus
    • COI: 1:CAS:528:DC%2BC38XltFKksLw%3D, PID: 22191639
    • Boroujerdi, A. F., Jones, S. S., & Bearden, D. W. (2012). NMR analysis of metabolic responses to extreme conditions of the temperature-dependent coral pathogen Vibrio coralliilyticus. Letters in Applied Microbiology,54, 209–216.
    • (2012) Letters in Applied Microbiology , vol.54 , pp. 209-216
    • Boroujerdi, A.F.1    Jones, S.S.2    Bearden, D.W.3
  • 5
    • 79958241183 scopus 로고    scopus 로고
    • NMR-based metabolomic analysis of the molecular pathogenesis of therapy-related myelodysplasia/acute myeloid leukemia
    • COI: 1:CAS:528:DC%2BC3MXlvVOgtr4%3D, PID: 21510650
    • Cano, K. E., Li, L., Bhatia, S., Bhatia, R., Forman, S. J., & Chen, Y. (2011). NMR-based metabolomic analysis of the molecular pathogenesis of therapy-related myelodysplasia/acute myeloid leukemia. Journal of Proteome Research,10, 2873–2881.
    • (2011) Journal of Proteome Research , vol.10 , pp. 2873-2881
    • Cano, K.E.1    Li, L.2    Bhatia, S.3    Bhatia, R.4    Forman, S.J.5    Chen, Y.6
  • 6
    • 77955518663 scopus 로고    scopus 로고
    • Cell culture metabolomics: Applications and future directions
    • COI: 1:CAS:528:DC%2BC3cXhtVeksbzE, PID: 20601091
    • Cuperlovic-Culf, M., Barnett, D. A., Culf, A. S., & Chute, I. (2010). Cell culture metabolomics: Applications and future directions. Drug Discovery Today,15, 610–621.
    • (2010) Drug Discovery Today , vol.15 , pp. 610-621
    • Cuperlovic-Culf, M.1    Barnett, D.A.2    Culf, A.S.3    Chute, I.4
  • 7
    • 77954457415 scopus 로고    scopus 로고
    • Towards quantitative metabolomics of mammalian cells: Development of a metabolite extraction protocol
    • COI: 1:CAS:528:DC%2BC3cXos1yisb0%3D, PID: 20435011
    • Dietmair, S., Timmins, N. E., Gray, P. P., Nielsen, L. K., & Kromer, J. O. (2010). Towards quantitative metabolomics of mammalian cells: Development of a metabolite extraction protocol. Analytical Biochemistry,404, 155–164.
    • (2010) Analytical Biochemistry , vol.404 , pp. 155-164
    • Dietmair, S.1    Timmins, N.E.2    Gray, P.P.3    Nielsen, L.K.4    Kromer, J.O.5
  • 8
    • 67249083144 scopus 로고    scopus 로고
    • Analytical approaches toward successful human cell metabolome studies by NMR spectroscopy
    • COI: 1:CAS:528:DC%2BD1MXmtlWgsLo%3D, PID: 19462963
    • Duarte, I. F., Marques, J., Ladeirinha, A. F., Rocha, C., Lamego, I., Calheiros, R., et al. (2009). Analytical approaches toward successful human cell metabolome studies by NMR spectroscopy. Analytical Chemistry,81, 5023–5032.
    • (2009) Analytical Chemistry , vol.81 , pp. 5023-5032
    • Duarte, I.F.1    Marques, J.2    Ladeirinha, A.F.3    Rocha, C.4    Lamego, I.5    Calheiros, R.6
  • 9
    • 33750621683 scopus 로고    scopus 로고
    • Determination of adenine and pyridine nucleotides in glucose-limited chemostat cultures of Penicillium simplicissimum by one-step ethanol extraction and ion-pairing liquid chromatography
    • COI: 1:CAS:528:DC%2BD28Xht1Sjs7rJ, PID: 17054897
    • Ganzera, M., Vrabl, P., Worle, E., Burgstaller, W., & Stuppner, H. (2006). Determination of adenine and pyridine nucleotides in glucose-limited chemostat cultures of Penicillium simplicissimum by one-step ethanol extraction and ion-pairing liquid chromatography. Analytical Biochemistry,359, 132–140.
    • (2006) Analytical Biochemistry , vol.359 , pp. 132-140
    • Ganzera, M.1    Vrabl, P.2    Worle, E.3    Burgstaller, W.4    Stuppner, H.5
  • 10
    • 0034099574 scopus 로고    scopus 로고
    • Proton NMR chemical shifts and coupling constants for brain metabolites
    • COI: 1:CAS:528:DC%2BD3cXksFSgtL8%3D, PID: 10861994
    • Govindaraju, V., Young, K., & Maudsley, A. A. (2000). Proton NMR chemical shifts and coupling constants for brain metabolites. NMR in Biomedicine,13, 129–153.
    • (2000) NMR in Biomedicine , vol.13 , pp. 129-153
    • Govindaraju, V.1    Young, K.2    Maudsley, A.A.3
  • 11
    • 0037420710 scopus 로고    scopus 로고
    • Optimization of cellular nucleotide extraction and sample preparation for nucleotide pool analyses using capillary electrophoresis
    • COI: 1:CAS:528:DC%2BD3sXjtlymtLc%3D, PID: 12668076
    • Grob, M. K., O’Brien, K., Chu, J. J., & Chen, D. D. (2003). Optimization of cellular nucleotide extraction and sample preparation for nucleotide pool analyses using capillary electrophoresis. Journal of Chromatography B Analytical Technologies in the Biomedical Life Sciences,788, 103–111.
    • (2003) Journal of Chromatography B Analytical Technologies in the Biomedical Life Sciences , vol.788 , pp. 103-111
    • Grob, M.K.1    O’Brien, K.2    Chu, J.J.3    Chen, D.D.4
  • 13
    • 84861797417 scopus 로고    scopus 로고
    • Gram-negative and gram-positive bacterial infections give rise to a different metabolic response in a mouse model
    • Hoerr, V., Zbytnuik, L., Leger, C., Tam, P. P., Kubes, P., & Vogel, H. J. (2012). Gram-negative and gram-positive bacterial infections give rise to a different metabolic response in a mouse model. Journal of Proteome Research, 11, 3231–3245.
    • (2012) Journal of Proteome Research , vol.11 , pp. 3231-3245
    • Hoerr, V.1    Zbytnuik, L.2    Leger, C.3    Tam, P.P.4    Kubes, P.5    Vogel, H.J.6
  • 14
    • 34247612307 scopus 로고    scopus 로고
    • Multiple high-throughput analyses monitor the response of E.coli to perturbations
    • COI: 1:CAS:528:DC%2BD2sXksFeksbw%3D, PID: 17379776
    • Ishii, N., Nakahigashi, K., Baba, T., Robert, M., Soga, T., Kanai, A., et al. (2007). Multiple high-throughput analyses monitor the response of E.coli to perturbations. Science,316, 593–597.
    • (2007) Science , vol.316 , pp. 593-597
    • Ishii, N.1    Nakahigashi, K.2    Baba, T.3    Robert, M.4    Soga, T.5    Kanai, A.6
  • 17
    • 0029874193 scopus 로고    scopus 로고
    • High cell-density culture of Escherichia coli
    • COI: 1:CAS:528:DyaK28XhsleqtLs%3D, PID: 8867291
    • Lee, S. Y. (1996). High cell-density culture of Escherichia coli. Trends in Biotechnology,14, 98–105.
    • (1996) Trends in Biotechnology , vol.14 , pp. 98-105
    • Lee, S.Y.1
  • 18
    • 33947427846 scopus 로고    scopus 로고
    • Evaluation of metabolite extraction strategies from tissue samples using NMR metabolomics
    • COI: 1:CAS:528:DC%2BD2sXktVOhu70%3D
    • Lin, C. Y., Wu, H., Tjeerdema, R. S., & Viant, M. R. (2007). Evaluation of metabolite extraction strategies from tissue samples using NMR metabolomics. Metabolomics,3, 55–67.
    • (2007) Metabolomics , vol.3 , pp. 55-67
    • Lin, C.Y.1    Wu, H.2    Tjeerdema, R.S.3    Viant, M.R.4
  • 20
    • 80053934312 scopus 로고    scopus 로고
    • Magnetic resonance spectroscopy detectable metabolomic fingerprint of response to antineoplastic treatment
    • COI: 1:CAS:528:DC%2BC3MXhsVSgsbvI, PID: 22022547
    • Lodi, A., & Ronen, S. M. (2011). Magnetic resonance spectroscopy detectable metabolomic fingerprint of response to antineoplastic treatment. PLoS One,6, e26155.
    • (2011) PLoS One , vol.6 , pp. 26155
    • Lodi, A.1    Ronen, S.M.2
  • 21
    • 0037330622 scopus 로고    scopus 로고
    • Global metabolite analysis: The influence of extraction methodology on metabolome profiles of Escherichia coli
    • PID: 12576070
    • Maharjan, R. P., & Ferenci, T. (2003). Global metabolite analysis: The influence of extraction methodology on metabolome profiles of Escherichia coli. Analytical Biochemistry,313, 145–154.
    • (2003) Analytical Biochemistry , vol.313 , pp. 145-154
    • Maharjan, R.P.1    Ferenci, T.2
  • 22
    • 77953474189 scopus 로고    scopus 로고
    • In vitro viability and cytotoxicity testing and same-well multi-parametric combinations for high throughput screening
    • COI: 1:CAS:528:DC%2BD1MXosFWnsr8%3D, PID: 20161834
    • Niles, A. L., Moravec, R. A., & Riss, T. L. (2009). In vitro viability and cytotoxicity testing and same-well multi-parametric combinations for high throughput screening. Current Chemical Genomics,3, 33–41.
    • (2009) Current Chemical Genomics , vol.3 , pp. 33-41
    • Niles, A.L.1    Moravec, R.A.2    Riss, T.L.3
  • 23
    • 33745434064 scopus 로고    scopus 로고
    • Diagnosing inborn errors of lipid metabolism with proton nuclear magnetic resonance spectroscopy
    • COI: 1:CAS:528:DC%2BD28Xms1Wmtrc%3D, PID: 16709621
    • Oostendorp, M., Engelke, U. F., Willemsen, M. A., & Wevers, R. A. (2006). Diagnosing inborn errors of lipid metabolism with proton nuclear magnetic resonance spectroscopy. Clinical Chemistry,52, 1395–1405.
    • (2006) Clinical Chemistry , vol.52 , pp. 1395-1405
    • Oostendorp, M.1    Engelke, U.F.2    Willemsen, M.A.3    Wevers, R.A.4
  • 24
    • 34247123157 scopus 로고    scopus 로고
    • Cellular metabolomics of Escherichia coli
    • COI: 1:CAS:528:DC%2BD2sXkt1Wru78%3D, PID: 17425455
    • Rabinowitz, J. D. (2007). Cellular metabolomics of Escherichia coli. Expert Review of Proteomics,4, 187–198.
    • (2007) Expert Review of Proteomics , vol.4 , pp. 187-198
    • Rabinowitz, J.D.1
  • 25
    • 33745212063 scopus 로고    scopus 로고
    • Using NMR metabolomics to identify responses of an environmental estrogen in blood plasma of fish
    • COI: 1:CAS:528:DC%2BD28XlvFGgtro%3D, PID: 16762427
    • Samuelsson, L. M., Forlin, L., Karlsson, G., Adolfsson-Erici, M., & Larsson, D. G. (2006). Using NMR metabolomics to identify responses of an environmental estrogen in blood plasma of fish. Aquatic Toxicology,78, 341–349.
    • (2006) Aquatic Toxicology , vol.78 , pp. 341-349
    • Samuelsson, L.M.1    Forlin, L.2    Karlsson, G.3    Adolfsson-Erici, M.4    Larsson, D.G.5
  • 26
    • 58149460015 scopus 로고    scopus 로고
    • Effective quenching processes for physiologically valid metabolite profiling of suspension cultured Mammalian cells
    • COI: 1:CAS:528:DC%2BD1cXhsVOjs7vL, PID: 19061395
    • Sellick, C. A., Hansen, R., Maqsood, A. R., Dunn, W. B., Stephens, G. M., Goodacre, R., et al. (2009). Effective quenching processes for physiologically valid metabolite profiling of suspension cultured Mammalian cells. Analytical Chemistry,81, 174–183.
    • (2009) Analytical Chemistry , vol.81 , pp. 174-183
    • Sellick, C.A.1    Hansen, R.2    Maqsood, A.R.3    Dunn, W.B.4    Stephens, G.M.5    Goodacre, R.6
  • 27
    • 80052841892 scopus 로고    scopus 로고
    • Microbial metabolomics
    • COI: 1:CAS:528:DC%2BC3MXhtlahu73P, PID: 22379393
    • Tang, J. (2011). Microbial metabolomics. Current Genomics,12, 391–403.
    • (2011) Current Genomics , vol.12 , pp. 391-403
    • Tang, J.1
  • 28
    • 0035369256 scopus 로고    scopus 로고
    • Determination of nucleotides and sugar nucleotides involved in protein glycosylation by high-performance anion-exchange chromatography: Sugar nucleotide contents in cultured insect cells and mammalian cells
    • COI: 1:CAS:528:DC%2BD3MXjslChsLk%3D, PID: 11373089
    • Tomiya, N., Ailor, E., Lawrence, S. M., Betenbaugh, M. J., & Lee, Y. C. (2001). Determination of nucleotides and sugar nucleotides involved in protein glycosylation by high-performance anion-exchange chromatography: Sugar nucleotide contents in cultured insect cells and mammalian cells. Analytical Biochemistry,293, 129–137.
    • (2001) Analytical Biochemistry , vol.293 , pp. 129-137
    • Tomiya, N.1    Ailor, E.2    Lawrence, S.M.3    Betenbaugh, M.J.4    Lee, Y.C.5
  • 29
    • 20344367794 scopus 로고    scopus 로고
    • NMR-derived developmental metabolic trajectories: An approach for visualizing the toxic actions of trichloroethylene during embryogenesis
    • COI: 1:CAS:528:DC%2BD28Xht1SmsrjE
    • Viant, M. R., Bundy, J. G., Pincetich, C. A., de Ropp, J. S., & Tjeerdema, R. S. (2005). NMR-derived developmental metabolic trajectories: An approach for visualizing the toxic actions of trichloroethylene during embryogenesis. Metabolomics,1, 149–158.
    • (2005) Metabolomics , vol.1 , pp. 149-158
    • Viant, M.R.1    Bundy, J.G.2    Pincetich, C.A.3    de Ropp, J.S.4    Tjeerdema, R.S.5
  • 30
    • 20544445469 scopus 로고    scopus 로고
    • High-throughput metabolic state analysis: The missing link in integrated functional genomics of yeasts
    • COI: 1:CAS:528:DC%2BD2MXks1Glt7k%3D, PID: 15667247
    • Villas-Boas, S. G., Moxley, J. F., Akesson, M., Stephanopoulos, G., & Nielsen, J. (2005). High-throughput metabolic state analysis: The missing link in integrated functional genomics of yeasts. Biochemical Journal,388, 669–677.
    • (2005) Biochemical Journal , vol.388 , pp. 669-677
    • Villas-Boas, S.G.1    Moxley, J.F.2    Akesson, M.3    Stephanopoulos, G.4    Nielsen, J.5
  • 32
    • 42349111860 scopus 로고    scopus 로고
    • Global metabolic profiling of Escherichia coli cultures: An evaluation of methods for quenching and extraction of intracellular metabolites
    • COI: 1:CAS:528:DC%2BD1cXjtVSiu7o%3D, PID: 18331064
    • Winder, C. L., Dunn, W. B., Schuler, S., Broadhurst, D., Jarvis, R., Stephens, G. M., et al. (2008). Global metabolic profiling of Escherichia coli cultures: An evaluation of methods for quenching and extraction of intracellular metabolites. Analytical Chemistry,80, 2939–2948.
    • (2008) Analytical Chemistry , vol.80 , pp. 2939-2948
    • Winder, C.L.1    Dunn, W.B.2    Schuler, S.3    Broadhurst, D.4    Jarvis, R.5    Stephens, G.M.6
  • 34
    • 1642374638 scopus 로고    scopus 로고
    • Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria
    • COI: 1:CAS:528:DC%2BD2cXitFKht7g%3D, PID: 15033521
    • Wittmann, C., Kromer, J. O., Kiefer, P., Binz, T., & Heinzle, E. (2004). Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria. Analytical Biochemistry,327, 135–139.
    • (2004) Analytical Biochemistry , vol.327 , pp. 135-139
    • Wittmann, C.1    Kromer, J.O.2    Kiefer, P.3    Binz, T.4    Heinzle, E.5
  • 36
    • 84859569948 scopus 로고    scopus 로고
    • Global metabolomic responses of Escherichia coli to heat stress
    • COI: 1:CAS:528:DC%2BC38XivVCmsbY%3D, PID: 22369756
    • Ye, Y., Zhang, L., Hao, F., Zhang, J., Wang, Y., & Tang, H. (2012b). Global metabolomic responses of Escherichia coli to heat stress. Journal of Proteome Research,11, 2559–2566.
    • (2012) Journal of Proteome Research , vol.11 , pp. 2559-2566
    • Ye, Y.1    Zhang, L.2    Hao, F.3    Zhang, J.4    Wang, Y.5    Tang, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.