Global metabolomic responses of escherichia coli to heat stress

Journal of Proteome Research

Volumn 11, Issue 4, 2012, Pages 2559-2566

  Ye, Yangfang ^a,b   Zhang, Limin ^a   Hao, Fuhua ^a   Zhang, Jingtao ^a,c   Wang, Yulan ^a   Tang, Huiru ^a  

^a Wuhan National Laboratory for Optoelectronics   (China)

^b NINGBO UNIVERSITY   (China)

^c QINGDAO INSTITUTE OF BIOENERGY AND BIOPROCESS TECHNOLOGY   (China)

Author keywords

Escherichia coli; heat stress; metabolomics; multivariate data analysis; nuclear magnetic resonance (NMR)

Indexed keywords

AMINE; AMINO ACID; CARBOXYLIC ACID; GLUCOSE; METHANOL; NUCLEOTIDE;

AMINO ACID ANALYSIS; ARTICLE; BACTERIAL GROWTH; BACTERIUM; CONTROLLED STUDY; ESCHERICHIA COLI; HEAT STRESS; METABOLOMICS; MULTIVARIATE ANALYSIS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE METABOLISM; OSMOREGULATION; PRIORITY JOURNAL;

AMINO ACIDS; ESCHERICHIA COLI; HEAT-SHOCK RESPONSE; METABOLOME; METABOLOMICS; MULTIVARIATE ANALYSIS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACIDS;

ESCHERICHIA COLI;

EID: 84859569948     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr3000128     Document Type: Article

References (35)

1. Boor, K. J. Bacterial stress responses: what doesnt kill them can make them stronger PLoS Biol. 2006, 4, 18-20
2. 32 in vivo J. Biol. Chem. 2005, 280, 17758-17768
3. Chuang, S. E.; Blattner, F. R. Characterization of twenty six new heat shock genes of Escherichia coli J. Bacteriol. 1993, 175, 5242-5252
4. 32, reveals a multifaceted cellular response to heat shock Gene. Dev. 2006, 20, 1776-1789
5. Hasan, C. M.; Shimizu, K. Effect of temperature up-shift on fermentation and metabolic characteristics in view of gene expressions in Escherichia coli Microb. Cell. Fact. 2008, 7, 35
6. Gunasekera, T. S.; Csonka, L. N.; Paliy, O. Genome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stresses J. Bacteriol. 2008, 190, 3712-3720
7. Soini, J.; Falschlehner, C.; Mayer, C.; Böhm, D.; Weinel, S.; Oanula, J.; Vasala, A.; Neubauer, P. Transient increase of ATP as a response to temperature up-shift in Escherichia coli Microb. Cell. Fact. 2005, 4, 9-17
8. Jozefczuk, S.; Klie, S.; Catchpole, G.; Szymanshi, J.; Cuadros-Inostroza, A.; Steinhauser, D.; Selbig, J.; Willmitzer, L. Metabolomic and transcriptomic stress response of Escherichia coli Mol. Syst. Biol. 2010, 6, 364-380
9. Zhang, L. M.; Ye, Y. F.; An, Y. P.; Tian, Y.; Wang, Y. L.; Tang, H. R. Systems responses of rats to aflatoxin B1 exposure revealed with metabonomic changes in multiple biological matrices J. Proteome Res. 2011, 10, 614-623
10. Zhang, X. Y.; Wang, Y. L.; Hao, F. H.; Zhou, X. H.; Han, X. Y.; Tang, H. R.; Ji, L. N. Human serum metabonomic analysis reveals progression axes for glucose intolerance and insulin resistance statuses J. Proteome Res. 2009, 8, 5188-5195
11. Xiao, C. N.; Hao, F. H.; Qin, X. R.; Wang, Y. L.; Tang, H. R. An optimized buffer system for NMR-based urinary metabonomics with effective pH control, chemical shift consistency and dilution minimization Analyst 2009, 134, 916-925
12. Trygg, J.; Wold, S. Orthogonal projections to latent structures (O-PLS) J. Chemometr. 2002, 16, 119-128
13. Vandenberg, R. A.; Hoefsloot, H. C.; Westerhuis, J.; Smilde, J. A.; Vanderwerf, A. K. Centering, scaling, and transformations: improving the biological information content of metabolomics data BMC Genomics 2006, 7, 142-156
14. 1H NMR spectroscopic metabonomic studies Anal. Chem. 2005, 77, 517-526
15. Trygg, J.; Holmes, E.; Lundstedt, T. Chemometrics in metabonomics J. Proteome Res. 2007, 6, 469-479
16. Westerhuis, J. A.; Hoefsloot, J. C.; Smit, S.; Vis, D. J.; Smilde, A. K.; van Velzen, E. J.; van Duijnhoven, J. P. M; van Dorsten, F. A. Assessment of PLS-DA cross validation Metabolomics 2008, 4, 81-89
17. Fan, T. W. M. Metabolite profiling by one- and two-dimensional NMR analysis of complex mixtures Prog. Nucl. Magn. Reson. Spectrosc. 1996, 28, 161-219
18. Fan, T. W. M.; Lane, A. N. Structure-based profiling of metabolites and iotopomers by NMR Prog. Nucl. Magn. Reson. Spectrosc. 2008, 52, 69-117
19. Wittmann, C.; Weber, J.; Betiku, E.; Krömer, J.; Böhm, D.; Rinas, U. Response of fluxome and metabolome to temperature-induced recombinant protein synthesis in Escherichia coli J. Biotechnol. 2007, 132, 375-384
20. Rosenqvist, H.; Kasula, H.; Reunanen, O.; Nurmikko, V. The 4-aminobutyrate pathway and 2-oxoglutarate dehydrogenase in Escherichia coli Acta Chem. Scand. 1973, 27, 3091-3100
21. Tkachenko, A. G.; Nesterova, L. Y.; Pshenichnov, M. P. Role of putrescine in the regulation of the expression of the oxidative stress defense genes of Escherichia coli Microbiology 2001, 70, 133-137
22. Gutierrez-Ríos, R. M.; Freyre-Gonzalez, J. A.; Resendis, O.; Collado-Vides, J.; Saier, M.; Gosset, G. Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli BMC Microbiol. 2007, 8, 53-71
23. Tabor, C. W.; Tabor, H. Polyamines in microorganisms Microbiol. Rev. 1985, 49, 81-99
24. Chou, H. T.; Kwon, D. H.; Hegazy, M.; Lu, C. D. Transcriptome analysis of agmatine and putrescine catabolism in Pseudomonas aeruginosa PAO1 J. Bacteriol. 2008, 190, 1966-1975
25. Privalle, C. T.; Fridovich, I. Induction of superoxide dismutase in Escherichia coli by heat shock Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 2723-2726
26. Chambers, S. T.; Kunin, C. M.; Miller, D.; Hamada, A. Dimethylthetin can substitute for glycine betaine as an osmoprotectant molecule for Escherichia coli J. Bacteriol. 1987, 169, 4845-4847
27. Caldas, T.; Demont-Caulet, N.; Ghazi, A.; Richarme, G. Thermoprotection by glycinebetaine and choline Microbiology 1999, 145, 2543-2548
28. Diamant, S.; Eliahu, N.; Rosenthal, D.; Goloubinoff, P. Chemical chaperones regulate molecular chaperones in vitro and in cells under combined salt and heat stresses J. Biol. Chem. 2001, 276, 39586-39591
29. Cayley, S.; Lewis, B. A.; Record, M. T., Jr Origins of the osmoprotective properties of betaine and proline in Escherichia coli K-12 J. Bacteriol. 1992, 174, 1586-1595
30. Poolman, B.; Glaasker, E. Regulation of compatible solute accumulation in bacteria Mol. Microbiol. 1998, 29, 397-407
31. Neelon, K.; Schreier, H. J.; Meekins, H.; Robinson, P. M.; Roberts, M. F. Compatible solute effects on thermostability of glutamine synthetase and aspartate transcarbamoylase from Methanococcus jannaschii Biochim. Biophys. Acta 2005, 1753, 164-173
32. MacMillan, S. V.; Alexander, D. A.; Culham, D. E.; Kunte, H. J.; Marshall, E. V.; Rochon, D.; Wood, J. M. The ion coupling and organic substrate specificities of somoregulatory transporter ProP in Escherichia coli Biochim. Biophys. Acta 1999, 1420, 30-44
33. Diamant, S.; Rosenthal, D.; Azem, A.; Eliahu, N.; Ben-Zvi, A. P.; Goloubinoff, P. Dicarboxylic amino acids and glycine-betaine regulate chaperone-mediated protein-disaggregation under stress Mol. Microbiol. 2003, 49, 401-410
34. Galili, G.; Tang, G. L.; Zhu, X. H.; Gakiere, B. Lysine catabolism: a stress and development super-regulated metabolic pathway Curr. Opin. Plant Biol. 2001, 4, 261-266
35. Malmendal, A.; Overgaard, J.; Bundy, J. G.; Sarensen, J. G.; Nielsen, N. C.; Loeschche, V.; Holmstrup, M. Metabolomic profiling of heat shock: hardening and recovery of homeostasis in Drosophila Am. J. Physiol.: Regul., Integr. Comp. Physiol. 2006, 291, R205-R212