Interconversion between three overstretched DNA structures

Journal of the American Chemical Society

Volumn 136, Issue 45, 2014, Pages 16073-16080

  Zhang, Xinghua ^a,b   Qu, Yuanyuan ^c,d   Chen, Hu ^b,e   Rouzina, Ioulia ^f   Zhang, Shengli ^c,g   Doyle, Patrick S ^a,h   Yan, Jie ^a,b,c,d  

^a SINGAPORE MIT ALLIANCE FOR RESEARCH AND TECHNOLOGY   (Singapore)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^c NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^d NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^e XIAMEN UNIVERSITY   (China)

^f UNIVERSITY OF MINNESOTA   (United States)

^g XI'AN JIAOTONG UNIVERSITY   (China)

^h Massachusetts Institute of Technology Cambridge   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TORSIONAL STRESS;

CONSTANT FORCE; DNA STRUCTURE; DOUBLE STRANDED DNA; HAIRPIN STRUCTURES; INTERCONVERSIONS; MULTIPLE STRUCTURES; NACL CONCENTRATION; SYSTEMATIC STUDY;

DNA;

DNA; DNA B; DOUBLE STRANDED DNA; SINGLE STRANDED DNA; SODIUM CHLORIDE;

ARTICLE; CONTINUOUS PROCESS; DNA BASE COMPOSITION; DNA DENATURATION; DNA HAIRPIN; DNA INTERCONVERSION; DNA SEQUENCE; DNA STRAND; DNA STRUCTURE; HYSTERESIS; PHASE TRANSITION; PROTEIN SECONDARY STRUCTURE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; DOSE RESPONSE; DRUG EFFECTS; KINETICS; TEMPERATURE;

DNA, B-FORM; DNA, SINGLE-STRANDED; DOSE-RESPONSE RELATIONSHIP, DRUG; KINETICS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; SODIUM CHLORIDE; TEMPERATURE;

EID: 84909992714     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja5090805     Document Type: Article

References (31)

1. Smith, S. B.; Cui, Y.; Bustamante, C. Science 1996, 271, 795
2. Cluzel, P.; Lebrun, A.; Heller, C.; Lavery, R.; Viovy, J. L.; Chatenay, D.; Caron, F. Science 1996, 271, 792
3. Konrad, M.; Bolonick, J. J. Am. Chem. Soc. 1996, 118, 10989
4. Lebrun, A.; Lavery, R. Nucleic Acids Res. 1996, 24, 2260
5. Leger, J. F.; Romano, G.; Sarkar, A.; Robert, J.; Bourdieu, L.; Chatenay, D.; Marko, J. F. Phys. Rev. Lett. 1999, 83, 1066
6. Rief, M.; Clausen-Schaumann, H.; Gaub, H. E. Nat. Struct. Biol. 1999, 6, 346
7. Rouzina, I.; Bloomfield, V. A. Biophys. J. 2001, 80, 882
8. Rouzina, I.; Bloomfield, V. A. Biophys. J. 2001, 80, 894
9. Wenner, J. R.; Williams, M. C.; Rouzina, I.; Bloomfield, V. A. Biophys. J. 2002, 82, 3160
10. Williams, M. C.; Rouzina, I.; Bloomfield, V. A. Acc. Chem. Res. 2002, 35, 159
11. Bryant, Z.; Stone, M. D.; Gore, J.; Smith, S. B.; Cozzarelli, N. R.; Bustamante, C. Nature 2003, 424, 338
12. Cocco, S.; Yan, J.; Leger, J. F.; Chatenay, D.; Marko, J. F. Phys. Rev. E 2004, 70, 011910
13. Mao, H.; Arias-Gonzalez, J. R.; Smith, S. B.; Tinoco, I., Jr.; Bustamante, C. Biophys. J. 2005, 89, 1308
14. Calderon, C. P.; Chen, W.-H.; Lin, K.-J.; Harris, N. C.; Cu-Hu, K. J. Phys.: Condens. Matter 2009, 21, 034114
15. van Mameren, J.; Gross, P.; Farge, G.; Hooijman, P.; Modesti, M.; Falkenberg, M.; Wuite, G. J.; Peterman, E. J. Proc. Natl. Acad. Sci. U. S. A. 2009, 106, 18231
16. Fu, H.; Chen, H.; Marko, J. F.; Yan, J. Nucleic Acids Res. 2010, 38, 5594
17. Fu, H.; Chen, H.; Zhang, X.; Qu, Y.; Marko, J. F.; Yan, J. Nucleic Acids Res. 2011, 39, 3473
18. Gross, P.; Laurens, N.; Oddershede, L. B.; Bockelmann, U.; Peterman, E. J. G.; Wuite, G. J. L. Nat. Phys. 2011, 7, 731
19. Paik, D. H.; Perkins, T. T. J. Am. Chem. Soc. 2011, 133, 3219
20. Bosaeus, N.; El-Sagheer, Afaf H.; Smith, Steven B.; Åkerman, Björn; Bustamante, Carlos; Nordén, B. Proc. Natl. Acad. Sci. U. S. A. 2012, 109, 15179
21. Zhang, X.; Chen, H.; Fu, H.; Doyle, S. P.; Yan, J. Proc. Natl. Acad. Sci. U. S. A. 2012, 109, 8103
22. Candelli, A.; Hoekstra, T. P.; Farge, G.; Gross, P.; Peterman, E. J.; Wuite, G. J. Biopolymers 2013, 99, 611
23. Bongini, L.; Melli, L.; Lombardi, V.; Bianco, P. Nucleic Acids Res. 2014, 42, 3436
24. Zhang, X.; Chen, H.; Le, S.; Rouzina, I.; Doyle, P. S.; Yan, J. Proc. Natl. Acad. Sci. U. S. A. 2013, 110, 3865
25. King, G. A.; Gross, P.; Bockelmann, U.; Modesti, M.; Wuite, G. J. L.; Peterman, E. J. G. Proc. Natl. Acad. Sci. U. S. A. 2013, 110, 3859
26. Baumann, C. G.; Smith, S. B.; Bloomfield, V. A.; Bustamante, C. Proc. Natl. Acad. Sci. U. S. A. 1997, 94, 6185
27. McIntosh, D. B.; Saleh, O. A. Macromolecules 2011, 44, 2328
28. Yan, J.; Skoko, D.; Marko, J. F. Phys. Rev. E 2004, 70, 011905
29. Beebe, T. P.; Lo, Y. S.; Simons, J. J. Phys. Chem. B 2002, 106, 9847
30. Bosaeus, N.; El-Sagheer, A. H.; Brown, T.; Akerman, B.; Norden, B. Nucleic Acids Res. 2014, 42, 8083
31. Dittmore, A.; Landy, J.; Molzon, A. A.; Saleh, O. A. J. Am. Chem. Soc. 2014, 136, 5974