-
1
-
-
44349162159
-
Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures
-
Chen, Z., Yang, H., Pavletich, N.P. (2008) Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature, 453, 489-494.
-
(2008)
Nature
, vol.453
, pp. 489-494
-
-
Chen, Z.1
Yang, H.2
Pavletich, N.P.3
-
2
-
-
84857034648
-
Recent advances in single molecule studies of nucleosomes
-
Killian, J.L., Li, M., Sheinin, M.Y., Wang, M.D. (2012) Recent advances in single molecule studies of nucleosomes. Curr. Opin. Struct. Biol., 22, 80-87.
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 80-87
-
-
Killian, J.L.1
Li, M.2
Sheinin, M.Y.3
Wang, M.D.4
-
3
-
-
33751098486
-
Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation
-
Dame, R.T., Noom, M.C., Wuite, G.J.L. (2006) Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation. Nature, 444, 387-390.
-
(2006)
Nature
, vol.444
, pp. 387-390
-
-
Dame, R.T.1
Noom, M.C.2
Wuite, G.J.L.3
-
4
-
-
0026495432
-
Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads
-
Smith, S.B., Finzi, L., Bustamante, C. (1992) Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads. Science, 258, 1122-1126.
-
(1992)
Science
, vol.258
, pp. 1122-1126
-
-
Smith, S.B.1
Finzi, L.2
Bustamante, C.3
-
5
-
-
0030064676
-
DNA: An extensible molecule
-
Cluzel, P., Lebrun, A., Heller, C., Lavery, R., Viovy, J.-L., Chatenay, D., Caron, F. (1996) DNA: an extensible molecule. Science, 271, 792-794.
-
(1996)
Science
, vol.271
, pp. 792-794
-
-
Cluzel, P.1
Lebrun, A.2
Heller, C.3
Lavery, R.4
Viovy, J.-L.5
Chatenay, D.6
Caron, F.7
-
6
-
-
0030024985
-
Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith, S.B., Cui, Y., Bustamante, C. (1996) Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science, 271, 795-799.
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
8
-
-
0035144566
-
Force-induced melting of the DNA double helix. 2. Effect of solution conditions
-
Rouzina, I., Bloomfield, V.A. (2001) Force-induced melting of the DNA double helix. 2. Effect of solution conditions. Biophys. J., 80, 894-900.
-
(2001)
Biophys. J.
, vol.80
, pp. 894-900
-
-
Rouzina, I.1
Bloomfield, V.A.2
-
9
-
-
51049121185
-
DNA overstretching in the presence of glyoxal: Structural evidence of force-induced DNA melting
-
Shokri, L., McCauley, M.J., Rouzina, I., Williams, M.C. (2008) DNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting. Biophys. J., 95, 1248-1255.
-
(2008)
Biophys. J.
, vol.95
, pp. 1248-1255
-
-
Shokri, L.1
McCauley, M.J.2
Rouzina, I.3
Williams, M.C.4
-
10
-
-
0036106380
-
Salt dependence of the elasticity and overstretching transition of single DNA molecules
-
Wenner, J.R., Williams, M.C., Rouzina, I., Bloomfield, V.A. (2002) Salt dependence of the elasticity and overstretching transition of single DNA molecules. Biophys. J., 82, 3160-3169.
-
(2002)
Biophys. J.
, vol.82
, pp. 3160-3169
-
-
Wenner, J.R.1
Williams, M.C.2
Rouzina, I.3
Bloomfield, V.A.4
-
11
-
-
0035144565
-
Effect of pH on the overstretching transition of double-stranded DNA: Evidence of force-induced DNA melting
-
Williams, M.C., Wenner, J.R., Rouzina, I., Bloomfield, V.A. (2001) Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting. Biophys. J., 80, 874-881.
-
(2001)
Biophys. J.
, vol.80
, pp. 874-881
-
-
Williams, M.C.1
Wenner, J.R.2
Rouzina, I.3
Bloomfield, V.A.4
-
12
-
-
80052442505
-
Quantifying how DNA stretches, melts and changes twist under tension
-
Gross, P., Laurens, N., Oddershede, L.B., Bockelmann, U., Peterman, E.J.G., Wuite, G.J.L. (2011) Quantifying how DNA stretches, melts and changes twist under tension. Nat. Phys., 7, 731-736.
-
(2011)
Nat. Phys.
, vol.7
, pp. 731-736
-
-
Gross, P.1
Laurens, N.2
Oddershede, L.B.3
Bockelmann, U.4
Peterman, E.J.G.5
Wuite, G.J.L.6
-
13
-
-
70849086477
-
Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging
-
van Mameren, J., Gross, P., Farge, G., Hooijman, P., Modesti, M., Falkenberg, M., Wuite, G.J.L., Peterman, E.J.G. (2009) Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging. Proc. Natl. Acad. Sci. U.S.A., 106, 18231-18236.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 18231-18236
-
-
Van Mameren, J.1
Gross, P.2
Farge, G.3
Hooijman, P.4
Modesti, M.5
Falkenberg, M.6
Wuite, G.J.L.7
Peterman, E.J.G.8
-
14
-
-
84874617885
-
Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching using fluorescence microscopy
-
King, G.A., Gross, P., Bockelmann, U., Modesti, M., Wuite, G.J.L., Peterman, E.J.G. (2013) Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching using fluorescence microscopy. Proc. Natl. Acad. Sci. U.S.A., 110, 3859-3864.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 3859-3864
-
-
King, G.A.1
Gross, P.2
Bockelmann, U.3
Modesti, M.4
Wuite, G.J.L.5
Peterman, E.J.G.6
-
15
-
-
77956059631
-
Two distinct overstretched DNA states
-
Fu, H., Chen, H., Marko, J.F., Yan, J. (2010) Two distinct overstretched DNA states. Nucleic Acids Res., 38, 5594-5600.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5594-5600
-
-
Fu, H.1
Chen, H.2
Marko, J.F.3
Yan, J.4
-
16
-
-
79955573136
-
Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching
-
Fu, H., Chen, H., Zhang, X., Qu, Y., Marko, J.F., Yan, J. (2011) Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching. Nucleic Acids Res., 39, 3473-3481.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3473-3481
-
-
Fu, H.1
Chen, H.2
Zhang, X.3
Qu, Y.4
Marko, J.F.5
Yan, J.6
-
17
-
-
0032919143
-
Sequence-dependent mechanics of single DNA molecules
-
Rief, M., Clausen-Schaumann, H., Gaub, H.E. (1999) Sequence-dependent mechanics of single DNA molecules. Nat. Struct. Biol., 6, 346-349.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 346-349
-
-
Rief, M.1
Clausen-Schaumann, H.2
Gaub, H.E.3
-
18
-
-
84874602376
-
Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry
-
Zhang, X., Chen, H., Le, S., Rouzina, I., Doyle, P.S., Yan, J. (2013) Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry. Proc. Natl. Acad. Sci. U.S.A., 110, 3865-3870.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 3865-3870
-
-
Zhang, X.1
Chen Le H, S.2
Rouzina, I.3
Doyle, P.S.4
Yan, J.5
-
19
-
-
42749104291
-
Overstretching and force-driven strand separation of double-helix DNA
-
Cocco, S., Yan, J., Léger, J.-F., Chatenay, D., Marko, J.F. (2004) Overstretching and force-driven strand separation of double-helix DNA. Phys. Rev. E, 70, 011910.
-
(2004)
Phys. Rev. e
, vol.70
, pp. 011910
-
-
Cocco, S.1
Yan, J.2
Léger, J.-F.3
Chatenay, D.4
Marko, J.F.5
-
20
-
-
80052481397
-
PicoNewton-millisecond force steps reveal the transition kinetics and mechanism of the double-stranded DNA elongation
-
Bianco, P., Bongini, L., Melli, L., Dolfi, M., Lombardi, V. (2011) PicoNewton-millisecond force steps reveal the transition kinetics and mechanism of the double-stranded DNA elongation. Biophys. J., 101, 866-874.
-
(2011)
Biophys. J.
, vol.101
, pp. 866-874
-
-
Bianco, P.1
Bongini, L.2
Melli, L.3
Dolfi, M.4
Lombardi, V.5
-
21
-
-
79952602216
-
Overstretching DNA at 65 pN does not require peeling from free ends or nicks
-
Paik, D.H., Perkins, T.T. (2011) Overstretching DNA at 65 pN does not require peeling from free ends or nicks. J. Am. Chem. Soc., 133, 3219-3221.
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 3219-3221
-
-
Paik, D.H.1
Perkins, T.T.2
-
22
-
-
69449102233
-
The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends
-
Danilowicz, C., Limouse, C., Hatch, K., Conover, A., Coljee, V.W., Kleckner, N., Prentiss, M. (2009) The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends. Proc. Natl. Acad. Sci. U.S.A., 106, 13196-13201.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 13196-13201
-
-
Danilowicz, C.1
Limouse, C.2
Hatch, K.3
Conover, A.4
Coljee, V.W.5
Kleckner, N.6
Prentiss, M.7
-
23
-
-
84866544846
-
Tension induces a base-paired overstretched DNA conformation
-
Bosaeus, N., El-Sagheer, A.H., Brown, T., Smith, S.B., A? kerman, B., Bustamante, C., Nordén, B. (2012) Tension induces a base-paired overstretched DNA conformation. Proc. Natl. Acad. Sci. U.S.A., 109, 15179-15184.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 15179-15184
-
-
Bosaeus, N.1
El-Sagheer, A.H.2
Brown, T.3
Smith, S.B.4
Akerman, B.5
Bustamante, C.6
Nordén, B.7
-
24
-
-
0034069676
-
Mechanical stability of single DNA molecules
-
Clausen-Schaumann, H., Rief, M., Tolksdorf, C., Gaub, H.E. (2000) Mechanical stability of single DNA molecules. Biophys. J., 78, 1997-2007.
-
(2000)
Biophys. J.
, vol.78
, pp. 1997-2007
-
-
Clausen-Schaumann, H.1
Rief, M.2
Tolksdorf, C.3
Gaub, H.E.4
-
25
-
-
84861451608
-
Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements
-
Zhang, X., Chen, H., Fu, H., Doyle, P.S., Yan, J. (2012) Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements. Proc. Natl. Acad. Sci. U.S.A., 109, 8103-8108.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 8103-8108
-
-
Zhang, X.1
Chen, H.2
Fu, H.3
Doyle, P.S.4
Yan, J.5
-
26
-
-
18344386476
-
Structural transitions of a twisted and stretched DNA molecule
-
Léger, J.F., Romano, G., Sarkar, A., Robert, J., Bourdieu, L., Chatenay, D., Marko, J.F. (1999) Structural transitions of a twisted and stretched DNA molecule. Phys. Rev. Lett., 83, 1066-1069.
-
(1999)
Phys. Rev. Lett.
, vol.83
, pp. 1066-1069
-
-
Léger, J.F.1
Romano, G.2
Sarkar, A.3
Robert, J.4
Bourdieu, L.5
Chatenay, D.6
Marko, J.F.7
-
27
-
-
0035333546
-
Structural transitions in DNA driven by external force and torque
-
Sarkar, A., Léger, J.-F., Chatenay, D., Marko, J.F. (2001) Structural transitions in DNA driven by external force and torque. Phys. Rev. E, 63, 051903.
-
(2001)
Phys. Rev. e
, vol.63
, pp. 051903
-
-
Sarkar, A.1
Léger, J.-F.2
Chatenay, D.3
Marko, J.F.4
-
28
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
Bryant, Z., Stone, M.D., Gore, J., Smith, S.B., Cozzarelli, N.R., Bustamante, C. (2003) Structural transitions and elasticity from torque measurements on DNA. Nature, 424, 338-341.
-
(2003)
Nature
, vol.424
, pp. 338-341
-
-
Bryant, Z.1
Stone, M.D.2
Gore, J.3
Smith, S.B.4
Cozzarelli, N.R.5
Bustamante, C.6
-
29
-
-
79953151278
-
Secondary structure of double-stranded DNA under stretching: Elucidation of the stretched form
-
Maaloum, M., Beker, A.F., Muller, P. (2011) Secondary structure of double-stranded DNA under stretching: elucidation of the stretched form. Phys. Rev. E, 83, 031903.
-
(2011)
Phys. Rev. e
, vol.83
, pp. 031903
-
-
Maaloum, M.1
Beker, A.F.2
Muller, P.3
-
30
-
-
0015246488
-
The reaction of glyoxal with nucleic acid components III. Kinetics of the reaction with monomers
-
Broude, N.E., Budowsky, E.I. (1971) The reaction of glyoxal with nucleic acid components III. Kinetics of the reaction with monomers. Biochim. Biophys. Acta, Nucleic Acids Protein Synth., 254, 380-388.
-
(1971)
Biochim. Biophys. Acta, Nucleic Acids Protein Synth.
, vol.254
, pp. 380-388
-
-
Broude, N.E.1
Budowsky, E.I.2
-
31
-
-
0015939401
-
Effect of chemical modification on the rate of renaturation of deoxyribonucleic acid. Deaminated and glyoxalated deoxyribonucleic acid
-
Hutton, J.R., Wetmur, J.G. (1973) Effect of chemical modification on the rate of renaturation of deoxyribonucleic acid. Deaminated and glyoxalated deoxyribonucleic acid. Biochemistry, 12, 558-563.
-
(1973)
Biochemistry
, vol.12
, pp. 558-563
-
-
Hutton, J.R.1
Wetmur, J.G.2
-
32
-
-
49249097455
-
Rapid and efficient DNA strand cross-linking by click chemistry
-
Ko?calka, P., El-Sagheer, A.H., Brown, T. (2008) Rapid and efficient DNA strand cross-linking by click chemistry. ChemBioChem, 9, 1280-1285.
-
(2008)
ChemBioChem
, vol.9
, pp. 1280-1285
-
-
Kocalka, P.1
El-Sagheer, A.H.2
Brown, T.3
-
33
-
-
38149133103
-
A very stable cyclic DNA miniduplex with just two base pairs
-
El-Sagheer, A.H., Kumar, R., Findlow, S., Werner, J.M., Lane, A.N., Brown, T. (2008) A very stable cyclic DNA miniduplex with just two base pairs. ChemBioChem, 9, 50-52.
-
(2008)
ChemBioChem
, vol.9
, pp. 50-52
-
-
El-Sagheer, A.H.1
Kumar, R.2
Findlow, S.3
Werner, J.M.4
Lane, A.N.5
Brown, T.6
-
34
-
-
0037099395
-
A stepwise Huisgen cycloaddition process: Copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynes
-
Rostovtsev, V.V., Green, L.G., Fokin, V.V., Sharpless, K.B. (2002) A stepwise Huisgen cycloaddition process: copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynes. Angew. Chem., Int. Ed., 41, 2596-2599.
-
(2002)
Angew. Chem., Int. Ed.
, vol.41
, pp. 2596-2599
-
-
Rostovtsev, V.V.1
Green, L.G.2
Fokin, V.V.3
Sharpless, K.B.4
-
35
-
-
0037012920
-
Peptidotriazoles on solid phase: [1, 2, 3]-triazoles by regiospecific copper(I)-catalyzed 1, 3-dipolar cycloadditions of terminal alkynes to azides
-
Torne, C.W., Christensen, C., Meldal, M. (2002) Peptidotriazoles on solid phase: [1, 2, 3]-triazoles by regiospecific copper(I)-catalyzed 1, 3-dipolar cycloadditions of terminal alkynes to azides. J. Org. Chem., 67, 3057-3064.
-
(2002)
J. Org. Chem.
, vol.67
, pp. 3057-3064
-
-
Torne, C.W.1
Christensen, C.2
Meldal, M.3
-
36
-
-
84904018243
-
-
United States patent no. US 451 B2
-
Bustamante, C., Smith, S.B. (2007) United States patent no. US 7, 274, 451 B2.
-
(2007)
, vol.7
, pp. 274
-
-
Bustamante, C.1
Smith, S.B.2
-
37
-
-
0037286741
-
Optical-trap force transducer that operates by direct measurement of light momentum
-
Smith, S.B., Cui, Y., Bustamante, C. (2003) Optical-trap force transducer that operates by direct measurement of light momentum. Methods Enzymol., 361, 134-160.
-
(2003)
Methods Enzymol.
, vol.361
, pp. 134-160
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
38
-
-
84899026759
-
Transient kinetics measured with force steps discriminate between double-stranded DNA elongation and melting and define the reaction energetics
-
Bongini, L., Melli, L., Lombardi, V., Bianco, P. (2014) Transient kinetics measured with force steps discriminate between double-stranded DNA elongation and melting and define the reaction energetics. Nucleic Acids Res., 42, 3436-3449.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 3436-3449
-
-
Bongini, L.1
Melli, L.2
Lombardi, V.3
Bianco, P.4
|