-
1
-
-
33646882068
-
Polycombcomplexes repress developmental regulators inmurine embryonic stem cells
-
Boyer, L. A. et al. Polycombcomplexes repress developmental regulators inmurine embryonic stem cells. Nature Cell Biol. 441, 349-353 (2006).
-
(2006)
Nature Cell Biol.
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
-
2
-
-
84885393469
-
Transcriptional regulation by Polycomb group proteins
-
Di Croce, L. & Helin, K. Transcriptional regulation by Polycomb group proteins. Nature Struct. Mol. Biol. 20, 1147-1155 (2013).
-
(2013)
Nature Struct. Mol. Biol.
, vol.20
, pp. 1147-1155
-
-
Di Croce, L.1
Helin, K.2
-
3
-
-
84902185617
-
Chromatin repressive complexes in stem cells, development, and cancer
-
Laugesen, A. & Helin, K. Chromatin repressive complexes in stem cells, development, and cancer. Cell Stem Cell 14, 735-751 (2014).
-
(2014)
Cell Stem Cell
, vol.14
, pp. 735-751
-
-
Laugesen, A.1
Helin, K.2
-
4
-
-
70350500219
-
Polycombgroup proteins: Navigators of lineage pathways led astray in cancer
-
Bracken, A. P. & Helin, K. Polycombgroup proteins: navigators of lineage pathways led astray in cancer. Nature Rev. Cancer 9, 773-784 (2009).
-
(2009)
Nature Rev. Cancer
, vol.9
, pp. 773-784
-
-
Bracken, A.P.1
Helin, K.2
-
5
-
-
84864072835
-
Polycombgenes andcancer: Time for clinical application?
-
Crea, F., Paolicchi, E., Marquez, V. E. & Danesi, R. Polycombgenes andcancer: Time for clinical application? Crit. Rev. Oncol. Hematol. 83, 184-193 (2012).
-
(2012)
Crit. Rev. Oncol. Hematol.
, vol.83
, pp. 184-193
-
-
Crea, F.1
Paolicchi, E.2
Marquez, V.E.3
Danesi, R.4
-
6
-
-
70349469565
-
Mechanisms of polycombgene silencing: Knowns and unknowns
-
Simon, J. A. & Kingston, R. E. Mechanisms of polycombgene silencing: knowns and unknowns. Nature Rev. Mol. Cell Biol. 10, 697-708 (2009).
-
(2009)
Nature Rev. Mol. Cell Biol.
, vol.10
, pp. 697-708
-
-
Simon, J.A.1
Kingston, R.E.2
-
7
-
-
84888001513
-
A new world of Polycombs: Unexpected partnerships and emerging functions
-
Schwartz, Y. B. & Pirrotta, V. A new world of Polycombs: unexpected partnerships and emerging functions. Nature Rev. Genet. 14, 853-864 (2013).
-
(2013)
Nature Rev. Genet.
, vol.14
, pp. 853-864
-
-
Schwartz, Y.B.1
Pirrotta, V.2
-
8
-
-
7244234099
-
Role of histone H2A ubiquitination in Polycomb silencing
-
Wang, H. et al. Role of histone H2A ubiquitination in Polycomb silencing. Nature 431, 873-878 (2004).
-
(2004)
Nature
, vol.431
, pp. 873-878
-
-
Wang, H.1
-
9
-
-
29144487990
-
Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing
-
Cao, R., Tsukada, Y.-I. & Zhang, Y. Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing. Mol. Cell 20, 845-854 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 845-854
-
-
Cao, R.1
Tsukada, Y.-I.2
Zhang, Y.3
-
10
-
-
84863011309
-
PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes
-
Gao, Z. et al. PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes. Mol. Cell 45, 344-356 (2012).
-
(2012)
Mol. Cell
, vol.45
, pp. 344-356
-
-
Gao, Z.1
-
11
-
-
84876871047
-
Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put
-
Simon, J. A. & Kingston, R. E. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Mol. Cell 49, 808-824 (2013).
-
(2013)
Mol. Cell
, vol.49
, pp. 808-824
-
-
Simon, J.A.1
Kingston, R.E.2
-
12
-
-
84902127230
-
Variant PRC1 complex-dependent H2A ubiquitylation drives PRC2 recruitment and polycomb domain formation
-
Blackledge, N. P. et al. Variant PRC1 complex-dependent H2A ubiquitylation drives PRC2 recruitment and polycomb domain formation. Cell 157, 1445-1459 (2014).
-
(2014)
Cell
, vol.157
, pp. 1445-1459
-
-
Blackledge, N.P.1
-
13
-
-
84878988149
-
KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands
-
Farcas, A. M. et al. KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands. eLife 1, e00205 (2012).
-
(2012)
ELife
, vol.1
, pp. e00205
-
-
Farcas, A.M.1
-
14
-
-
84875799835
-
Fbxl10/Kdm2b Recruits Polycomb Repressive Complex 1 to CpG Islands and Regulates H2A Ubiquitylation
-
Wu, X., Johansen, J. V. & Helin, K. Fbxl10/Kdm2b Recruits Polycomb Repressive Complex 1 to CpG Islands and Regulates H2A Ubiquitylation. Mol. Cell 49, 1134-1146 (2013).
-
(2013)
Mol. Cell
, vol.49
, pp. 1134-1146
-
-
Wu, X.1
Johansen, J.V.2
Helin, K.3
-
15
-
-
0034915764
-
Mechanisms underlying ubiquitination
-
Pickart, C. M. & Pickart, C. M. Mechanisms underlying ubiquitination. Annu. Rev. Biochem. 70, 503-533 (2001).
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 503-533
-
-
Pickart, C.M.1
Pickart, C.M.2
-
16
-
-
84865781586
-
Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis
-
Plechanovová, A., Jaffray, E. G., Tatham, M. H., Naismith, J. H. & Hay, R. T. Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis. Nature 489, 115-120 (2012).
-
(2012)
Nature
, vol.489
, pp. 115-120
-
-
Plechanovová, A.1
Jaffray, E.G.2
Tatham, M.H.3
Naismith, J.H.4
Hay, R.T.5
-
17
-
-
84866858702
-
Structure of an E3:E2, Ub Complex Reveals an Allosteric Mechanism Shared among RING/U-box Ligases
-
Pruneda, J. N. et al. Structure of an E3:E2, Ub Complex Reveals an Allosteric Mechanism Shared among RING/U-box Ligases. Mol. Cell 47, 933-942 (2012).
-
(2012)
Mol. Cell
, vol.47
, pp. 933-942
-
-
Pruneda, J.N.1
-
18
-
-
84866124869
-
BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer
-
Dou, H., Buetow, L., Sibbet, G. J., Cameron, K. & Huang, D. T. BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer. Nature Struct. Mol. Biol. 19, 876-883 (2012).
-
(2012)
Nature Struct. Mol. Biol.
, vol.19
, pp. 876-883
-
-
Dou, H.1
Buetow, L.2
Sibbet, G.J.3
Cameron, K.4
Huang, D.T.5
-
20
-
-
33745753378
-
Structure and E3-ligase activity of the Ring-Ring complex of polycomb proteins Bmi1 and Ring1b
-
Buchwald, G. et al. Structure and E3-ligase activity of the Ring-Ring complex of polycomb proteins Bmi1 and Ring1b. EMBO J. 25, 2465-2474 (2006).
-
(2006)
EMBO J.
, vol.25
, pp. 2465-2474
-
-
Buchwald, G.1
-
21
-
-
1842411320
-
Crystal structure of the nucleosomecore particle at 2.8Å resolution
-
Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F. & Richmond, T. J. Crystal structure of the nucleosomecore particle at 2.8Å resolution. Nature 389,251-260 (1997).
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
22
-
-
80155198826
-
Recognition of UbcH5c and the nucleosome by the Bmi1/Ring1b ubiquitin ligase complex
-
Bentley, M. L. et al. Recognition of UbcH5c and the nucleosome by the Bmi1/Ring1b ubiquitin ligase complex. EMBO J. 30, 3285-3297 (2011).
-
(2011)
EMBO J.
, vol.30
, pp. 3285-3297
-
-
Bentley, M.L.1
-
23
-
-
84898725334
-
The nucleosome acidic patch plays a critical role inRNF168-dependent ubiquitination of histone H2A
-
Mattiroli, F., Uckelmann, M., Sahtoe, D. D., van Dijk, W. J. & Sixma, T. K. The nucleosome acidic patch plays a critical role inRNF168-dependent ubiquitination of histone H2A. Nat. Commun. 5, 3291 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 3291
-
-
Mattiroli, F.1
Uckelmann, M.2
Sahtoe, D.D.3
Van Dijk, W.J.4
Sixma, T.K.5
-
24
-
-
84876864015
-
Structure of a ubiquitin E1-E2 complex: Insights to E1-E2 thioester transfer
-
Olsen, S. K. & Lima, C. D. Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol. Cell 49, 884-896 (2013).
-
(2013)
Mol. Cell
, vol.49
, pp. 884-896
-
-
Olsen, S.K.1
Lima, C.D.2
-
25
-
-
77957252758
-
Crystal structures of nucleosome core particles containing the '601' strong positioning sequence
-
Vasudevan, D., Chua, E. Y. D. & Davey, C. A. Crystal structures of nucleosome core particles containing the '601' strong positioning sequence. J. Mol. Biol. 403, 1-10 (2010).
-
(2010)
J. Mol. Biol.
, vol.403
, pp. 1-10
-
-
Vasudevan, D.1
Chua, E.Y.D.2
Davey, C.A.3
-
26
-
-
84897449829
-
Nucleosome acidic patch promotes RNF168-and RING1B/BMI1-dependent H2AX and H2A ubiquitination and DNA damage signaling
-
Leung, J. W., Agarwal, P., Canny, M. D., Gong, F. & Robison, A. D. Nucleosome acidic patch promotes RNF168-and RING1B/BMI1-dependent H2AX and H2A ubiquitination and DNA damage signaling. PLoS Genet. 10, e1004178 (2014).
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004178
-
-
Leung, J.W.1
Agarwal, P.2
Canny, M.D.3
Gong, F.4
Robison, A.D.5
-
27
-
-
32444439636
-
The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA
-
Barbera, A. J. et al. The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA. Science 311, 856-861 (2006).
-
(2006)
Science
, vol.311
, pp. 856-861
-
-
Barbera, A.J.1
-
28
-
-
77957367439
-
Structure of RCC1 chromatin factor bound to the nucleosome core particle
-
Makde, R. D., England, J. R., Yennawar, H. P. & Tan, S. Structure of RCC1 chromatin factor bound to the nucleosome core particle. Nature 467, 562-566 (2010).
-
(2010)
Nature
, vol.467
, pp. 562-566
-
-
Makde, R.D.1
England, J.R.2
Yennawar, H.P.3
Tan, S.4
-
29
-
-
81555212272
-
Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0Å resolution
-
Armache, K. J., Garlick, J. D., Canzio, D., Narlikar, G. J. & Kingston, R. E. Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0Å resolution. Science 334, 977-982 (2011).
-
(2011)
Science
, vol.334
, pp. 977-982
-
-
Armache, K.J.1
Garlick, J.D.2
Canzio, D.3
Narlikar, G.J.4
Kingston, R.E.5
-
30
-
-
84878363880
-
A conserved mechanismfor centromeric nucleosome recognition by centromere protein CENP-C
-
Kato, H. et al. A conserved mechanismfor centromeric nucleosome recognition by centromere protein CENP-C. Science 340, 1110-1113 (2013).
-
(2013)
Science
, vol.340
, pp. 1110-1113
-
-
Kato, H.1
-
31
-
-
84858419821
-
Fluorescence strategies for high-throughput quantification of protein interactions
-
Hieb, A. R., D'Arcy, S., Kramer, M. A., White, A. E. & Luger, K. Fluorescence strategies for high-throughput quantification of protein interactions. Nucleic Acids Res. 40, e33 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. e33
-
-
Hieb, A.R.1
D'Arcy, S.2
Kramer, M.A.3
White, A.E.4
Luger, K.5
-
32
-
-
20444384040
-
Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex
-
Reverter, D. & Lima, C. D. Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex. Nature 435, 687-692 (2005).
-
(2005)
Nature
, vol.435
, pp. 687-692
-
-
Reverter, D.1
Lima, C.D.2
-
33
-
-
79957949190
-
UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids
-
Wenzel, D. M., Lissounov, A., Brzovic, P. S. & Klevit, R. E. UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids. Nature 474,105-108(2011).
-
(2011)
Nature
, vol.474
, pp. 105-108
-
-
Wenzel, D.M.1
Lissounov, A.2
Brzovic, P.S.3
Klevit, R.E.4
-
34
-
-
84908356633
-
BRCA1 is a histone-H2Aspecific ubiquitin ligase
-
Kalb, R., Mallery, D. L., Larkin, C., Huang, J. T. J. & Hiom, K. BRCA1 is a histone-H2Aspecific ubiquitin ligase. Cell Rep. 8, 999-1005 (2014).
-
(2014)
Cell Rep.
, vol.8
, pp. 999-1005
-
-
Kalb, R.1
Mallery, D.L.2
Larkin, C.3
Huang, J.T.J.4
Hiom, K.5
-
35
-
-
0034804672
-
Structure of a BRCA1-BARD1 heterodimeric RING-RING complex
-
Brzovic, P. S., Rajagopal, P., Hoyt, D. W., King, M. C. & Klevit, R. E. Structure of a BRCA1-BARD1 heterodimeric RING-RING complex. Nature Struct. Biol. 8, 833-837 (2001).
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 833-837
-
-
Brzovic, P.S.1
Rajagopal, P.2
Hoyt, D.W.3
King, M.C.4
Klevit, R.E.5
-
36
-
-
49449114800
-
NMR structure of chaperone Chz1 complexed with histones H2A.Z-H2B
-
Zhou, Z. et al. NMR structure of chaperone Chz1 complexed with histones H2A.Z-H2B. Nature Struct. Mol. Biol. 15, 868-869 (2008).
-
(2008)
Nature Struct. Mol. Biol.
, vol.15
, pp. 868-869
-
-
Zhou, Z.1
-
37
-
-
14844303376
-
The pST44 polycistronic expression system for producing protein complexes in Escherichia coli
-
Tan, S., Kern, R. C. & Selleck, W. The pST44 polycistronic expression system for producing protein complexes in Escherichia coli. Protein Expr. Purif. 40, 385-395 (2005).
-
(2005)
Protein Expr. Purif.
, vol.40
, pp. 385-395
-
-
Tan, S.1
Kern, R.C.2
Selleck, W.3
-
38
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
Lowary, P. T. & Widom, J. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J. Mol. Biol. 276, 19-42 (1998).
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
39
-
-
0033039285
-
Preparation of nucleosome core particle from recombinant histones
-
Luger, K., Rechsteiner, T. J. T. & Richmond, T. J. T. Preparation of nucleosome core particle from recombinant histones. Methods Enzymol. 304, 3-19 (1999).
-
(1999)
Methods Enzymol.
, vol.304
, pp. 3-19
-
-
Luger, K.1
Rechsteiner, T.J.T.2
Richmond, T.J.T.3
-
40
-
-
4344718651
-
Practical aspects of using the microbatch method in screening conditions for protein crystallization
-
D'Arcy, A., Mac Sweeney, A. & Haber, A. Practical aspects of using the microbatch method in screening conditions for protein crystallization. Methods 34, 323-328 (2004).
-
(2004)
Methods
, vol.34
, pp. 323-328
-
-
D'Arcy, A.1
MacSweeney, A.2
Haber, A.3
-
42
-
-
33644875355
-
Scaling and assessment of data quality
-
Evans, P. Scaling and assessment of data quality. Acta Crystallogr. D 62, 72-82 (2006).
-
(2006)
Acta Crystallogr. D
, vol.62
, pp. 72-82
-
-
Evans, P.1
-
43
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J. et al. Phaser crystallographic software. J. Appl. Crystallogr.40, 658-674 (2007).
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
44
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A. & Dodson, E. J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53, 240-255 (1997).
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
45
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D. et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D 67, 235-242 (2011).
-
(2011)
Acta Crystallogr. D
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
-
46
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
47
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T. et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921 (1998).
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
-
48
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D 66, 486-501 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
49
-
-
84883742201
-
The N-terminal acetylation of Sir3 stabilizes its binding to the nucleosome core particle
-
Arnaudo, N. et al. The N-terminal acetylation of Sir3 stabilizes its binding to the nucleosome core particle. Nature Struct. Mol. Biol. 20, 1119-1121 (2013).
-
(2013)
Nature Struct. Mol. Biol.
, vol.20
, pp. 1119-1121
-
-
Arnaudo, N.1
-
50
-
-
80051685994
-
Crystal structure of the human centromeric nucleosome containing CENP-A
-
Tachiwana, H. et al. Crystal structure of the human centromeric nucleosome containing CENP-A. Nature 476, 232-235 (2011).
-
(2011)
Nature
, vol.476
, pp. 232-235
-
-
Tachiwana, H.1
-
51
-
-
84883781627
-
Contribution of histone N-terminal tails to the structure and stability of nucleosomes
-
Iwasaki, W. et al. Contribution of histone N-terminal tails to the structure and stability of nucleosomes. FEBS Open Bio. 3, 363-369 (2013).
-
(2013)
FEBS Open Bio.
, vol.3
, pp. 363-369
-
-
Iwasaki, W.1
-
52
-
-
0000243829
-
PROCHECK: A programto check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M. W. & Moss, D. S. PROCHECK: a programto check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291 (1993).
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
-
54
-
-
84860290638
-
JLigand: A graphical tool for the CCP4 template-restraint library
-
Lebedev, A. A. et al. JLigand: a graphical tool for the CCP4 template-restraint library. Acta Crystallogr. D 68, 431-440 (2012).
-
(2012)
Acta Crystallogr. D
, vol.68
, pp. 431-440
-
-
Lebedev, A.A.1
|