Examination of DNA methylation status of the ELOVL2 marker may be useful for human age prediction in forensic science

Forensic Science International: Genetics

Volumn 14, Issue , 2015, Pages 161-167

  Zbieć Piekarska, Renata ^a   Spólnicka, Magdalena ^a   Kupiec, Tomasz ^b   Makowska, Zanetta ^a   Spas, Anna ^a   Parys Proszek, Agnieszka ^b   Kucharczyk, Krzysztof ^c   Płoski, Rafał ^d   Branicki, Wojciech ^b  

^a Central Forensic Laboratory of Police Warszawa   (Poland)

^b INSTITUTE OF FORENSIC RESEARCH   (Poland)

^c BioVectis   (Poland)

^d MEDICAL UNIVERSITY OF WARSAW   (Poland)

Author keywords

Age prediction; Biomarker; CpG islands; DNA methylation; ELOVL2; Forensic science

Indexed keywords

BISULFITE; DNA; ELOVL2 PROTEIN; MEMBRANE PROTEIN; UNCLASSIFIED DRUG; ACYLTRANSFERASE; FATTY ACID ELONGASES; GENETIC MARKER;

ADOLESCENT; ADULT; AGE; AGE DETERMINATION; AGED; ARTICLE; BLOOD SAMPLING; BLOOD STAIN; BLOOD STORAGE; CHILD; CONTROLLED STUDY; CPG ISLAND; DNA EXTRACTION; DNA METHYLATION; FEMALE; FORENSIC SCIENCE; GENE EXPRESSION; GENE LOCUS; HUMAN; HUMAN EXPERIMENT; LINEAR REGRESSION ANALYSIS; MALE; MEASUREMENT ERROR; NUCLEOTIDE SEQUENCE; PREDICTION; PROMOTER REGION; PYROSEQUENCING; ROOM TEMPERATURE; FORENSIC GENETICS; GENETIC MARKER; GENETICS;

ACETYLTRANSFERASES; CPG ISLANDS; DNA METHYLATION; FORENSIC GENETICS; GENETIC MARKERS; HUMANS;

EID: 84908317108     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2014.10.002     Document Type: Article

References (34)

1. C. Phillips, A. Salas, J.J. Sánchez, M. Fondevila, A. Gómez-Tato, J. Alvarez-Dios, M. Calaza, M.C. de Cal, D. Ballard, M.V. Lareu, A. Carracedo, and SNPforID Consortium Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs Forensic Sci. Int. Genet. 1 3-4 2007 273 280
2. M. Kayser, and P.M. Schneider DNA-based prediction of human externally visible characteristics in forensics: motivations, scientific challenges, and ethical considerations Forensic Sci. Int. Genet. 3 3 2009 154 161
3. M. Kayser, and P. de Knijff Improving human forensics through advances in genetics, genomics and molecular biology Nat. Rev. Genet. 12 3 2011 179 192
4. C. Meissner, and S. Ritz-Timme Molecular pathology and age estimation Forensic Sci. Int. 203 1-3 2010 34 43
5. A. Vidaki 1., B. Daniel, and D.S. Court Forensic DNA methylation profiling - potential opportunities and challenges Forensic Sci. Int. Genet. 7 5 2013 499 507
6. R.C. Dobberstein, J. Huppertz, N. von Wurmb-Schwark, and S. Ritz-Timme Degradation of biomolecules in artificially and naturally aged teeth: implications for age estimation based on aspartic acid racemization and DNA analysis Forensic Sci. Int. 179 2008 181 191
7. Y. Sato, T. Kondo, and T. Ohshima Estimation of age of human cadavers by immunohistochemical assessment of advanced glycation end products in the hippocampus Histopathology 38 2001 217 220
8. A. Tsuji, A. Ishiko, T. Takasaki, and N. Ikeda Estimating age of humans based on telomere shortening Forensic Sci. Int. 126 2002 197 199
9. C. Meissner, N. von Wurmb, and M. Oehmichen Detection of the age-dependent 4977 bp deletion of mitochondrial DNA. A pilot study Int. J. Legal Med. 110 1997 288 291
10. D.C. Douek, R.D. McFarland, P.H. Keiser, E.A. Gage, J.M. Massey, B.F. Haynes, M.A. Polis, A.T. Haase, M.B. Feinberg, and J.L. Sullivan Changes in thymic function with age and during the treatment of HIV infection Nature 396 1998 690 695
11. D. Zubakov, F. Liu, M.C. van Zelm, J. Vermeulen, B.A. Oostra, C.M. van Duijn, G.J. Driessen, J.J. van Dongen, M. Kayser, and A.W. Langerak Estimating human age from T-cell DNA rearrangements Curr. Biol. 20 22 2010 R970 R971
12. M.F. Fraga, and M. Esteller Epigenetics and aging: the targets and the marks Trends Genet. 23 2007 413 418
13. B.C. Christensen, E.A. Houseman, C.J. Marsit, S. Zheng, M.R. Wrensch, J.L. Wiemels, H.H. Nelson, M.R. Karagas, J.F. Padbury, R. Bueno, D.J. Sugarbaker, R.F. Yeh, J.K. Wiencke, and K.T. Kelsey Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context PLoS Genet. 5 2009 e1000602
14. S. Bocklandt, W. Lin, M.E. Sehl, F.J. Sanchez, J.S. Sinsheimer, and S. Horvath Vilain epigenetic predictor of age PLoS ONE 6 2011 e14821
15. P. Garagnani, M.G. Bacalini, C. Pirazzini, D. Gori, C. Giuliani, D. Mari, A.M. Di Blasio, D. Gentilini, G. Vitale, S. Collino, S. Rezzi, G. Castellani, M. Capri, S. Salvioli, and C. Franceschi Methylation of ELOVL2 gene as a new epigenetic marker of age Aging Cell 11 6 2012 1132 1134
16. G. Hannum, J. Guinney, L. Zhao, L. Zhang, G. Hughes, S. Sadda, B. Klotzle, M. Bibikova, J.B. Fan, Y. Gao, R. Deconde, M. Chen, I. Rajapakse, S. Friend, T. Ideker, and K. Zhang Genome-wide methylation profiles reveal quantitative views of human aging rates Mol. Cell 49 2013 359 376
17. A. Johansson, S. Enroth, and U. Gyllensten Continuous aging of the human DNA methylome throughout the human lifespan PLoS ONE 8 6 2013 e67378
18. I. Florath, K. Butterbach, H. Müller, M. Bewerunge-Hudler, and H. Brenner Cross-sectional and longitudinal changes in DNA methylation with age: an epigenome-wide analysis revealing over 60 novel age-associated CpG sites Hum. Mol. Genet. 23 5 2014 1186 1201
19. C.I. Weidner, Q. Lin, C.M. Koch, L. Eisele, F. Beier, P. Ziegler, D.O. Bauerschlag, K.H. Jöckel, R. Erbel, T.W. Mühleisen, M. Zenke, T.H. Brümmendorf, and W. Wagner Aging of blood can be tracked by DNA methylation changes at just three CpG sites Genome Biol. 15 2 2014 R24
20. A.E. Leonard 1., B. Kelder, E.G. Bobik, L.T. Chuang, C.J. Lewis, J.J. Kopchick, P. Mukerji, and Y.S. Huang Identification and expression of mammalian long-chain PUFA elongation enzymes Lipids 37 8 2002 733 740
21. A. Jakobsson 1., R. Westerberg, and A. Jacobsson Fatty acid elongases in mammals: their regulation and roles in metabolism Prog. Lipid Res. 45 3 2006 237 249
22. R.N. Lemaitre 1., T. Tanaka, W. Tang, A. Manichaikul, M. Foy, E.K. Kabagambe, J.A. Nettleton, I.B. King, L.C. Weng, S. Bhattacharya, S. Bandinelli, J.C. Bis, S.S. Rich, D.R. Jacobs Jr., A. Cherubini, B. McKnight, S. Liang, X. Gu, K. Rice, C.C. Laurie, T. Lumley, B.L. Browning, B.M. Psaty, Y.D. Chen, Y. Friedlander, L. Djousse, J.H. Wu, D.S. Siscovick, A.G. Uitterlinden, D.K. Arnett, L. Ferrucci, M. Fornage, M.Y. Tsai, D. Mozaffarian, and L.M. Steffen Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium PLoS Genet. 7 7 2011 e1002193
23. K. Suhre 1., S.Y. Shin, A.K. Petersen, R.P. Mohney, D. Meredith, B. Wägele, E. Altmaier, CARDIoGRAM, P. Deloukas, J. Erdmann, E. Grundberg, C.J. Hammond, M.H. de Angelis, G. Kastenmüller, A. Köttgen, F. Kronenberg, M. Mangino, C. Meisinger, T. Meitinger, H.W. Mewes, M.V. Milburn, C. Prehn, J. Raffler, J.S. Ried, W. Römisch-Margl, N.J. Samani, K.S. Small, H.E. Wichmann, G. Zhai, T. Illig, T.D. Spector, J. Adamski, N. Soranzo, and C. Gieger Human metabolic individuality in biomedical and pharmaceutical research Nature 477 7362 2011 54 60
24. A. Demirkan 1., C.M. van Duijn, P. Ugocsai, A. Isaacs, P.P. Pramstaller, G. Liebisch, J.F. Wilson, Å. Johansson, I. Rudan, Y.S. Aulchenko, A.V. Kirichenko, A.C. Janssens, R.C. Jansen, C. Gnewuch, F.S. Domingues, C. Pattaro, S.H. Wild, I. Jonasson, O. Polasek, I.V. Zorkoltseva, A. Hofman, L.C. Karssen, M. Struchalin, J. Floyd, W. Igl, Z. Biloglav, L. Broer, A. Pfeufer, I. Pichler, S. Campbell, G. Zaboli, I. Kolcic, F. Rivadeneira, J. Huffman, N.D. Hastie, A. Uitterlinden, L. Franke, C.S. Franklin, V. Vitart, DIAGRAM Consortium, C.P. Nelson, M. Preuss, CARDIoGRAM Consortium, J.C. Bis, C.J. O'Donnell, N. Franceschini, CHARGE Consortium, J.C. Witteman, T. Axenovich, B.A. Oostra, T. Meitinger, A.A. Hicks, C. Hayward, A.F. Wright, U. Gyllensten, H. Campbell, G. Schmitz, and EUROSPAN Consortium Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations PLoS Genet. 8 2 2012 e1002490
25. M. Inouye 1., S. Ripatti, J. Kettunen, L.P. Lyytikäinen, N. Oksala, P.P. Laurila, A.J. Kangas, P. Soininen, M.J. Savolainen, J. Viikari, M. Kähönen, M. Perola, V. Salomaa, O. Raitakari, T. Lehtimäki, M.R. Taskinen, M.R. Järvelin, M. Ala-Korpela, A. Palotie, and P.I. de Bakker Novel loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis PLoS Genet. 8 8 2012 e1002907
26. E.J. Kim, M.K. Kim, X.J. Jin, J.H. Oh, J.E. Kim, and J.H. Chung Skin aging and photoaging alter fatty acids composition, including 11,14,17-eicosatrienoic acid, in the epidermis of human skin J. Korean Med. Sci. 25 2010 980 983
27. J. Tost, and I.G. Gut DNA methylation analysis by pyrosequencing Nat. Protoc. 2 9 2007 2265 2275
28. N. Vilahur, A.A. Baccarelli, M. Bustamante, S. Agramunt, H.M. Byun, M.F. Fernandez, J. Sunyer, and X. Estivill Storage conditions and stability of global DNA methylation in placental tissue Epigenomics 5 3 2013 341 348
29. B.L. LaRue, J.L. King, and B. Budowle A validation study of the Nucleix DSI-Semen kit - a methylation-based assay for semen identification Int. J. Legal Med. 127 2 2013 299 308
30. J.H. An, A. Choi, K.J. Shin, W.I. Yang, and H.Y. Lee DNA methylation-specific multiplex assays for body fluid identification Int. J. Legal Med. 127 1 2013 35 43
31. P.J. Antunes, T. Madi, K. Balamurugan, R. Bombardi, G. Duncan, and B. McCord DNA methylation markers as a powerful technique to discriminate body fluids present in crime scenes Proceedings of the 24th International Symposium on Human Identification 2014
32. C.M. Koch, and W. Wagner Epigenetic-aging-signature to determine age in different tissues Aging 3 2011 1018 1027
33. A. Choi, K.J. Shin, W.I. Yang, and H.Y. Lee Body fluid identification by integrated analysis of DNA methylation and body fluid-specific microbial DNA Int. J. Legal Med. 128 1 2014 33 41
34. A.E. Teschendorf, U. Menon, A. Gentry-Maharaj, S.J. Ramus, D.J. Weisenberger, H. Shen, M. Campan, H. Noushmehr, S.G. Bell, A.P. Maxwell, D.A. Savage, E. Mueller-Holzner, and C. Marth Age dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer Genome Res. 20 2010 440 446