메뉴 건너뛰기




Volumn 5, Issue 3, 2013, Pages 341-348

Storage conditions and stability of global DNA methylation in placental tissue

Author keywords

cohort study; DNA methylation stability; luminometric methylation assay; placenta; pyrosequencing; variability

Indexed keywords

BISULFITE; GENOMIC DNA;

EID: 84879116145     PISSN: 17501911     EISSN: 1750192X     Source Type: Journal    
DOI: 10.2217/epi.13.29     Document Type: Article
Times cited : (37)

References (37)
  • 1
    • 84874051091 scopus 로고    scopus 로고
    • Combined influence of gene-specific cord blood methylation and maternal smoking habit on birth weight
    • Haworth KE, Farrell WE, Emes RD et al. Combined influence of gene-specific cord blood methylation and maternal smoking habit on birth weight. Epigenomics 5(1), 37-49 (2013).
    • (2013) Epigenomics , vol.5 , Issue.1 , pp. 37-49
    • Haworth, K.E.1    Farrell, W.E.2    Emes, R.D.3
  • 2
    • 84859150673 scopus 로고    scopus 로고
    • Genetic and non-genetic influences during pregnancy on infant global and site specific DNA methylation: Role for folate gene variants and vitamin B12
    • McKay JA, Groom A, Potter C et al. Genetic and non-genetic influences during pregnancy on infant global and site specific DNA methylation: role for folate gene variants and vitamin B12. PLoS ONE 7(3), e33290 (2012).
    • (2012) PLoS ONE , vol.7 , Issue.3
    • McKay, J.A.1    Groom, A.2    Potter, C.3
  • 3
    • 84861477730 scopus 로고    scopus 로고
    • Influence of prenatal arsenic exposure and newborn sex on global methylation of cord blood DNA
    • Pilsner JR, Hall MN, Liu X et al. Influence of prenatal arsenic exposure and newborn sex on global methylation of cord blood DNA. PLoS ONE 7(5), e37147 (2012).
    • (2012) PLoS ONE , vol.7 , Issue.5
    • Pilsner, J.R.1    Hall, M.N.2    Liu, X.3
  • 4
    • 77958489643 scopus 로고    scopus 로고
    • Ischemic heart disease and stroke in relation to blood DNA methylation
    • Baccarelli A, Wright R, Bollati V et al. Ischemic heart disease and stroke in relation to blood DNA methylation. Epidemiology 21(6), 819-828 (2010).
    • (2010) Epidemiology , vol.21 , Issue.6 , pp. 819-828
    • Baccarelli, A.1    Wright, R.2    Bollati, V.3
  • 5
    • 77952331728 scopus 로고    scopus 로고
    • Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia
    • Deneberg S, Grövdal M, Karimi M et al. Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia. Leukemia 24(5), 932-941 (2010).
    • (2010) Leukemia , vol.24 , Issue.5 , pp. 932-941
    • Deneberg, S.1    Grövdal, M.2    Karimi, M.3
  • 6
    • 84869841618 scopus 로고    scopus 로고
    • Alu and LINE-1 methylation and lung function in the normative ageing study
    • Lange NE, Sordillo J, Tarantini L et al. Alu and LINE-1 methylation and lung function in the normative ageing study. BMJ Open 2(5), e001231 (2012).
    • (2012) BMJ Open , vol.2 , Issue.5
    • Lange, N.E.1    Sordillo, J.2    Tarantini, L.3
  • 7
    • 84871763019 scopus 로고    scopus 로고
    • Systemic steroid exposure is associated with differential methylation in chronic obstructive pulmonary disease
    • Wan ES, Qiu W, Baccarelli A et al. Systemic steroid exposure is associated with differential methylation in chronic obstructive pulmonary disease. Am. J. Respir. Crit. Care Med. 186(12), 1248-1255 (2012).
    • (2012) Am. J. Respir. Crit. Care Med , vol.186 , Issue.12 , pp. 1248-1255
    • Wan, E.S.1    Qiu, W.2    Baccarelli, A.3
  • 8
    • 84861766439 scopus 로고    scopus 로고
    • DNA methylation in peripheral blood measured by LUMA is associated with breast cancer in a population-based study
    • Xu X, Gammon MD, Hernandez-Vargas H et al. DNA methylation in peripheral blood measured by LUMA is associated with breast cancer in a population-based study. FASEB J. 26(6), 2657-2666 (2012).
    • (2012) FASEB J , vol.26 , Issue.6 , pp. 2657-2666
    • Xu, X.1    Gammon, M.D.2    Hernandez-Vargas, H.3
  • 9
    • 48449090669 scopus 로고    scopus 로고
    • Brain banks: Benefits, limitations and cautions concerning the use of post-mortem brain tissue for molecular studies
    • Ferrer I, Martinez A, Boluda S, Parchi P, Barrachina M. Brain banks: benefits, limitations and cautions concerning the use of post-mortem brain tissue for molecular studies. Cell Tissue Bank 9(3), 181-194 (2008).
    • (2008) Cell Tissue Bank , vol.9 , Issue.3 , pp. 181-194
    • Ferrer, I.1    Martinez, A.2    Boluda, S.3    Parchi, P.4    Barrachina, M.5
  • 10
    • 65549092297 scopus 로고    scopus 로고
    • Placental biomarkers of phthalate effects on mRNA transcription: Application in epidemiologic research
    • Adibi JJ, Hauser R, Williams PL et al. Placental biomarkers of phthalate effects on mRNA transcription: application in epidemiologic research. Environ. Health 8, 20 (2009).
    • (2009) Environ. Health , vol.8 , pp. 20
    • Adibi, J.J.1    Hauser, R.2    Williams, P.L.3
  • 11
    • 78649451374 scopus 로고    scopus 로고
    • Evaluating DNA methylation and gene expression variability in the human term placenta
    • Avila L, Yuen RK, Diego-Alvarez D, Peñaherrera MS, Jiang R, Robinson WP. Evaluating DNA methylation and gene expression variability in the human term placenta. Placenta 31(12), 1070-1077 (2010).
    • (2010) Placenta , vol.31 , Issue.12 , pp. 1070-1077
    • Avila, L.1    Yuen, R.K.2    Diego-Alvarez, D.3    Peñaherrera, M.S.4    Jiang, R.5    Robinson, W.P.6
  • 13
    • 33846110316 scopus 로고    scopus 로고
    • Brain protein preservation largely depends on the postmortem storage temperature: Implications for study of proteins in human neurologic diseases and management of brain banks: A BrainNet Europe Study
    • Ferrer I, Santpere G, Arzberger T et al. Brain protein preservation largely depends on the postmortem storage temperature: implications for study of proteins in human neurologic diseases and management of brain banks: a BrainNet Europe Study. J. Neuropathol. Exp. Neurol. 66(1), 35-46 (2007).
    • (2007) J. Neuropathol. Exp. Neurol , vol.66 , Issue.1 , pp. 35-46
    • Ferrer, I.1    Santpere, G.2    Arzberger, T.3
  • 14
    • 33646091514 scopus 로고    scopus 로고
    • Low molecular weight species of tau in Alzheimer's disease are dependent on tau phosphorylation sites but not on delayed post-mortem delay in tissue processing
    • Santpere G, Puig B, Ferrer I. Low molecular weight species of tau in Alzheimer's disease are dependent on tau phosphorylation sites but not on delayed post-mortem delay in tissue processing. Neurosci. Lett. 399(1-2), 106-110 (2006).
    • (2006) Neurosci. Lett , vol.399 , Issue.1-2 , pp. 106-110
    • Santpere, G.1    Puig, B.2    Ferrer, I.3
  • 16
    • 84863338072 scopus 로고    scopus 로고
    • Adult global DNA methylation in relation to pre-natal nutrition
    • Lumey LH, Terry MB, Delgado-Cruzata L et al. Adult global DNA methylation in relation to pre-natal nutrition. Int. J. Epidemiol. 41(1), 116-123 (2012).
    • (2012) Int. J. Epidemiol , vol.41 , Issue.1 , pp. 116-123
    • Lumey, L.H.1    Terry, M.B.2    Delgado-Cruzata, L.3
  • 17
    • 84859626233 scopus 로고    scopus 로고
    • Global methylation patterns in idiopathic pulmonary fibrosis
    • Rabinovich EI, Kapetanaki MG, Steinfeld I et al. Global methylation patterns in idiopathic pulmonary fibrosis. PLoS ONE 7(4), e33770 (2012).
    • (2012) PLoS ONE , vol.7 , Issue.4
    • Rabinovich, E.I.1    Kapetanaki, M.G.2    Steinfeld, I.3
  • 18
    • 0030115772 scopus 로고    scopus 로고
    • Creation of genomic methylation patterns
    • Bestor TH, Tycko B. Creation of genomic methylation patterns. Nat. Genet. 12(4), 363-367 (1996).
    • (1996) Nat. Genet , vol.12 , Issue.4 , pp. 363-367
    • Bestor, T.H.1    Tycko, B.2
  • 19
    • 32344450824 scopus 로고    scopus 로고
    • Genomic DNA methylation: The mark and its mediators
    • Klose RJ, Bird AP. Genomic DNA methylation: the mark and its mediators. Trends Biochem. Sci. 31(2), 89-97 (2006).
    • (2006) Trends Biochem. Sci , vol.31 , Issue.2 , pp. 89-97
    • Klose, R.J.1    Bird, A.P.2
  • 20
    • 84875026871 scopus 로고    scopus 로고
    • Delivery type not associated with global methylation at birth
    • Virani S, Dolinoy DC, Halubai S et al. Delivery type not associated with global methylation at birth. Clin. Epigenetics 4(1), 8 (2012).
    • (2012) Clin. Epigenetics , vol.4 , Issue.1 , pp. 8
    • Virani, S.1    Dolinoy, D.C.2    Halubai, S.3
  • 21
    • 2042437650 scopus 로고    scopus 로고
    • International human genome sequencing consortium. Initial sequencing and analysis of the human genome
    • Lander ES, Linton LM, Birren B et al. International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409(6822), 860-921 (2001).
    • (2001) Nature , vol.409 , Issue.6822 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3
  • 22
    • 0021099196 scopus 로고
    • Retroposons defined
    • Rogers J. Retroposons defined. Nature 301(5900), 460 (1983).
    • (1983) Nature , vol.301 , Issue.5900 , pp. 460
    • Rogers, J.1
  • 23
    • 33645284007 scopus 로고    scopus 로고
    • Methylation of endogenous human retroelements in health and disease
    • Schulz WA, Steinhoff C, Florl AR. Methylation of endogenous human retroelements in health and disease. Curr. Top. Microbiol. Immunol. 310, 211-250 (2006).
    • (2006) Curr. Top. Microbiol. Immunol , vol.310 , pp. 211-250
    • Schulz, W.A.1    Steinhoff, C.2    Florl, A.R.3
  • 24
    • 84864722475 scopus 로고    scopus 로고
    • Global DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry
    • Delgado-Cruzata L, Wu HC, Perrin M et al. Global DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry. Epigenetics 7(8), 868-874 (2012).
    • (2012) Epigenetics , vol.7 , Issue.8 , pp. 868-874
    • Delgado-Cruzata, L.1    Wu, H.C.2    Perrin, M.3
  • 25
    • 34247156577 scopus 로고    scopus 로고
    • Using LUMA: A luminometric-based assay for global DNA-methylation
    • Karimi M, Johansson S, Ekstrom TJ. Using LUMA: a luminometric-based assay for global DNA-methylation. Epigenetics 1(1), 45-48 (2006).
    • (2006) Epigenetics , vol.1 , Issue.1 , pp. 45-48
    • Karimi, M.1    Johansson, S.2    Ekstrom, T.J.3
  • 26
    • 43149098062 scopus 로고    scopus 로고
    • Comprehensive high-throughput arrays for relative methylation (CHARM)
    • Irizarry RA, Ladd-Acosta C, Carvalho B et al. Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Res. 18(5), 780-790 (2008).
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 780-790
    • Irizarry, R.A.1    Ladd-Acosta, C.2    Carvalho, B.3
  • 27
    • 45849127657 scopus 로고    scopus 로고
    • Intra-individual change over time in DNA methylation with familial clustering
    • Bjornsson HT, Sigurdsson MI, Fallin MD et al. Intra-individual change over time in DNA methylation with familial clustering. JAMA 299(24), 2877-2883 (2008).
    • (2008) JAMA , vol.299 , Issue.24 , pp. 2877-2883
    • Bjornsson, H.T.1    Sigurdsson, M.I.2    Fallin, M.D.3
  • 28
    • 84865746170 scopus 로고    scopus 로고
    • Cohort profile: The INMA-Infancia y Medio Ambiente-(Environment and Childhood) Project
    • INMA Project
    • Guxens M, Ballester F, Espada M et al.; INMA Project. Cohort profile: the INMA-Infancia y Medio Ambiente-(Environment and Childhood) Project. Int. J. Epidemiol. 41(4), 930-940 (2012).
    • (2012) Int. J. Epidemiol , vol.41 , Issue.4 , pp. 930-940
    • Guxens, M.1    Ballester, F.2    Espada, M.3
  • 29
    • 67650067284 scopus 로고    scopus 로고
    • Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer
    • Choi SH, Worswick S, Byun HM et al. Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer. Int. J. Cancer 125(3), 723-729 (2009).
    • (2009) Int. J. Cancer , vol.125 , Issue.3 , pp. 723-729
    • Choi, S.H.1    Worswick, S.2    Byun, H.M.3
  • 30
    • 2342557977 scopus 로고    scopus 로고
    • A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements
    • Yang AS, Estécio MR, Doshi K, Kondo Y, Tajara EH, Issa JP. A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements. Nucleic Acids Res. 32(3), e38 (2004).
    • (2004) Nucleic Acids Res , vol.32 , Issue.3
    • Yang, A.S.1    Estécio, M.R.2    Doshi, K.3    Kondo, Y.4    Tajara, E.H.5    Issa, J.P.6
  • 31
    • 38449113853 scopus 로고    scopus 로고
    • DNA methylation analysis by pyrosequencing
    • Tost J, Gut IG. DNA methylation analysis by pyrosequencing. Nat. Protoc. 2(9), 2265-2275 (2007).
    • (2007) Nat. Protoc , vol.2 , Issue.9 , pp. 2265-2275
    • Tost, J.1    Gut, I.G.2
  • 32
    • 84860516671 scopus 로고    scopus 로고
    • Intragenic ATM methylation in peripheral blood DNA as a biomarker of breast cancer risk
    • Brennan K, Garcia-Closas M, Orr N et al. Intragenic ATM methylation in peripheral blood DNA as a biomarker of breast cancer risk. Cancer Res. 72(9), 2304-2313 (2012).
    • (2012) Cancer Res , vol.72 , Issue.9 , pp. 2304-2313
    • Brennan, K.1    Garcia-Closas, M.2    Orr, N.3
  • 33
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genomewide DNA methylation analysis
    • Laird PW. Principles and challenges of genomewide DNA methylation analysis. Nat. Rev. Genet. 11(3), 191-203 (2010).
    • (2010) Nat. Rev. Genet , vol.11 , Issue.3 , pp. 191-203
    • Laird, P.W.1
  • 34
    • 84866860120 scopus 로고    scopus 로고
    • Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling
    • Boyle P, Clement K, Gu H et al. Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling. Genome Biol. 13(10), R92 (2012).
    • (2012) Genome Biol , vol.13 , Issue.10
    • Boyle, P.1    Clement, K.2    Gu, H.3
  • 35
    • 17644423100 scopus 로고    scopus 로고
    • The correlation between sampling site and gene expression in the term human placenta
    • Wyatt SM, Kraus FT, Roh CR, Elchalal U, Nelson DM, Sadovsky Y et al. The correlation between sampling site and gene expression in the term human placenta. Placenta 26(5), 372-379 (2005).
    • (2005) Placenta , vol.26 , Issue.5 , pp. 372-379
    • Wyatt, S.M.1    Kraus, F.T.2    Roh, C.R.3    Elchalal, U.4    Nelson, D.M.5    Sadovsky, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.