Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the world

Studies in Mycology

Volumn 78, Issue 1, 2014, Pages 63-139

  Visagie, C M ^a   Hirooka, Y ^b   Tanney, J B ^b   Whitfield, E ^b   Mwange, K ^b   Meijer, M ^a   Amend, A S ^c   Seifert, K A ^b   Samson, R A ^a  

^a CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^b AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^c UNIVERSITY OF HAWAII   (United States)

Author keywords

Environmental metagenomics; Eurotiales; Indoor moulds; Trichocomaceae

Indexed keywords

ASPERGILLUS; EUROTIALES; PENICILLIUM; TALAROMYCES; TRICHOCOMACEAE;

EID: 84908281051     PISSN: 01660616     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.simyco.2014.07.002     Document Type: Article

References (109)

1. Adams RI, Miletto M, Taylor JW, et al. (2013a). Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances. The ISME Journal 7: 1262-1273.
2. Adams RI, Miletto M, Taylor JW, et al. (2013b). The diversity and distribution of fungi on residential surfaces. PLoS One 8: e78866.
3. Aimanianda V, Bayry J, Bozza S, et al. (2009). Surface hydrophobin prevents immune recognition of airborne fungal spores. Nature 460: 1117-1121.
4. Amend AS, Seifert KA, Samson RA, et al. (2010). Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics. PNAS 107: 13748-13753.
5. Andersen B, Frisvad JC, Søndergaard I, et al. (2011). Associations between fungal species and water-damaged building materials. Applied and Environmental Microbiology 77: 4180-4188.
6. Brian PW, Curtis PJ, Hemming HG, et al. (1957). Wortmannin, an antibiotic produced by Penicillium wortmanni. Transactions of the British Mycological Society 40: 365-368.
7. Chunduri J (2014). Indoor fungal populations inhabiting cement structuresremedial measures. IOSR Journal of Environmental Science, Toxicology and Food Technology 8: 19-24.
8. Codner RC, Sargeant K, Yeo R (1963). Production of aflatoxin by the culture of strains of Aspergillus flavus-oryzae on sterilized peanuts. Biotechnology and Bioengineering 5: 185-192.
9. Collado J, Platas G, Paulus B, et al. (2007). High-throughput culturing of fungi from plant litter by a dilution-to-extinction technique. FEMS Microbiology Ecology 60: 521-533.
10. Devi SS, Sreenivasulu Y, Rao KVB (2014). Talaromyces verruculosus, a novel marine fungi as a potent polyhydroxybutyrate degrader. Research Journal of Pharmacy and Technology 7: 433-438.
11. Domsch KH, Gams W, Anderson T-H (1980). Compendium of Soil Fungi. IHWVerlag, Eching.
12. Dufossé L, Fouillaud M, Caro Y, et al. (2014). Filamentous fungi are large-scale producers of pigments and colorants for the food industry. Current Opinion in Biotechnology 26: 56-61.
13. Ezekiel CN, Udom IE, Frisvad JC, et al. (2014). Assessment of aflatoxigenic Aspergillus and other fungi in millet and sesame from Plateau State, Nigeria. Mycology 5: 16-22.
14. Flannigan B, Samson RA, Miller JD (2011). Microorganisms in Home and Indoor Work Environments: Diversity, Health Impacts, Investigation and Control. CRC Press, Boca Raton.
15. Frisvad JC, Frank JM, Houbraken J, et al. (2004a). New ochratoxin A producing species of Aspergillus section Circumdati. Studies in Mycology 50: 23-43.
16. Frisvad J, Samson RA (2004). Polyphasic taxonomy of Penicillium subgenus Penicillium. A guide to identification of food and air-borne terverticillate Penicillia and their mycotoxins. Studies in Mycology 49: 1-174.
17. Frisvad JC, Smedsgaard J, Larsen TO, et al. (2004b). Mycotoxins, drugs and other extrolites produced by species in Penicillium subgenus Penicillium. Studies in Mycology 49: 201-241.
18. Frisvad JC, Yilmaz N, Thrane U, et al. (2013). Talaromyces atroroseus, a new species efficiently producing industrially relevant red pigments (SE Baker, Ed.). PLoS One 8: e84102.
19. Fujii T, Hoshino T, Inoue H, et al. (2013). Taxonomic revision of the cellulosedegrading fungus Acremonium cellulolyticus nomen nudum to Talaromyces based on phylogenetic analysis. FEMS Microbiology Letters 351: 32-41.
20. Garber G (2001). An overview of fungal infections. Drugs 61(Suppl. 1): 1-12.
21. Geiser DM, Taylor JW, Ritchie KB, et al. (1998). Cause of sea fan death in the West Indies. Nature 394: 137-138.
22. Giraud F, Giraud T, Aguileta G, et al. (2009). Microsatellite loci to recognize species for the cheese starter and contaminating strains associated with cheese manufacturing. International Journal of Food Microbiology 137: 204-213.
23. Glass NL, Donaldson GC (1995). Development of premier sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Applied and Environmental Microbiology 61: 1323-1330.
24. Gorbushina AA, Kort R, Schulte A, et al. (2007). Life in Darwin's dust: intercontinental transport and survival of microbes in the nineteenth century. Environmental Microbiology 9: 2911-2922.
25. Gouy M, Guindon S, Gascuel O (2010). SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221-224.
26. Green BJ, Tovey ER, Beezhold DH, et al. (2009). Surveillance of fungal allergic sensitization using the fluorescent halogen immunoassay. Journal de mycologie medicale 19: 253-261.
27. Grosjean P, Weber R (2007). Fungus balls of the paranasal sinuses: a review. European Archives of Oto-Rhino-Laryngology 264: 461-470.
28. Höppe P, Martinac I (1998). Indoor climate and air quality. Review of current and future topics in the field of ISB study group 10. International Journal of Biometeorology 42: 1-7.
29. Hong S-B, Cho H-S, Shin H-D, et al. (2006). Novel Neosartorya species isolated from soil in Korea. International Journal of Systematic and Evolutionary Microbiology 56: 477-486.
30. Horner WE, Helbling A, Salvaggio JE, et al. (1995). Fungal allergens. Clinical Microbiology Reviews 8: 161-179.
31. Hoog GS de (2000). Atlas of Clinical Fungi. Centraalbureau voor Schimmelcultures, Utrecht, Netherlands.
32. Houbraken J, Due M, Varga J, et al. (2007). Polyphasic taxonomy of Aspergillus section Usti. Studies in Mycology 59: 107-128.
33. Houbraken J, Frisvad JC, Samson RA (2011a). Fleming's penicillin producing strain is not Penicillium chrysogenum but P. rubens. IMA Fungus 2: 87-95.
34. Houbraken J, Frisvad JC, Samson RA (2011b). Taxonomy of Penicillium section Citrina. Studies in Mycology 70: 53-138.
35. Houbraken J, Frisvad JC, Seifert KA, et al. (2012). New penicillin-producing Penicillium species and an overview of section Chrysogena. Persoonia 29: 78-100.
36. Houbraken J, Lopez-Quintero CA, Frisvad JC, et al. (2010). Five new Penicillium species, P. araracuarense, P. elleniae, P. penarojense, P. vanderhammenii and P. wotroi, from Colombian leaf litter. International Journal of Systematic and Evolutionary Microbiology 61: 1462-1475.
37. Houbraken J, Samson RA (2011). Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Studies in Mycology 70: 1-51.
38. Houbraken J, Visagie CM, Seifert KA, et al. (2014b). Review of Penicillium section Aspergilloides. Studies in Mycology 78: 373-451.
39. Houbraken J, Vries RP de, Samson RA (2014a). Modern taxonomy of biotechnologically important Aspergillus and Penicillium species. Advances in Applied Microbiology 86: 199-249.
40. Hubka V, Lyskova P, Frisvad JC, et al. (2014). Aspergillus pragensis sp. nov. discovered during molecular reidentification of clinical isolates belonging to Aspergillus section Candidi. Medical Mycology 52: 565-576.
41. Jaakkola JJK, Hwang B-F, Jaakkola MS (2010). Home dampness and molds as determinants of allergic rhinitis in childhood: a 6-year, population-based cohort study. American Journal of Epidemiology 172: 451-459.
42. Jurjević Ž, Peterson SW, Horn BW(2012). Aspergillus section Versicolores: ninenew species and multilocus DNA sequence based phylogeny. IMA Fungus 3: 59-79.
43. Kanse OS, Whitelaw-Weckert M, Kadam TA, et al. (2014). Phosphate solubilization by stress-tolerant soil fungus Talaromyces funiculosus SLS8 isolated from the Neem rhizosphere. Annals of Microbiology: In press. http://dx.doi.org/10.1007/s13213-014-0839-6.
44. Karvala K, Toskala E, Luukkonen R, et al. (2011). Prolonged exposure to damp and moldy workplaces and new-onset asthma. International Archives of Occupational and Environmental Health 84: 713-721.
45. Katoh K, Standley DM (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772-780.
46. Kauserud H, Svegården IB, Saetre G-P, et al. (2007). Asian origin and rapid global spread of the destructive dry rot fungus Serpula lacrymans. Molecular Ecology 16: 3350-3360.
47. Kirkwood M, Todd JD, Rypien KL, et al. (2009). The opportunistic coral pathogen Aspergillus sydowii contains dddP and makes dimethyl sulfide from dimethylsulfoniopropionate. The ISME Journal 4: 147-150.
48. Kõljalg U, Larsson K-H, Abarenkov K, et al. (2005). UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytologist 166: 1063-1068.
49. Kõljalg U, Nilsson RH, Abarenkov K, et al. (2013). Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology 22: 5271-5277.
50. Kong HZ (2000). A new Penicillium species isolated from Guizhou. Mycosystema 19: 1-2.
51. Kong HZ, Liang ZQ (2003). A new Penicillium species isolated from Jiangxi, China. Mycosystema 22: 4-5.
52. Kornerup A, Wanscher JH (1967). Methuen Handbook of Colour. Methuen & Co Ltd, Copenhagen.
53. Latgé J-P (1999). Aspergillus fumigatus and Aspergillosis. Clinical Microbiology Reviews 12: 310-350.
54. Li DM, Horie Y, Wang Y, et al. (1998). Three new Aspergillus species isolated from clinical sources as a causal agent of human aspergillosis. Mycoscience 39: 299-305.
55. Lin SJ, Schranz J, Teutsch SM (2001). Aspergillosis case-fatality rate: systematic review of the literature. Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 32: 358-366.
56. Lyratzopoulos G, Ellis M, Nerringer R, et al. (2002). Invasive infection due to Penicillium species other than P. marneffei. Journal of Infection 45: 184-195.
57. Mahmoudi M, Gershwin ME (2000). Sick building syndrome. III. Stachybotrys chartarum. The Journal of Asthma: Official Journal of the Association for the Care of Asthma 37: 191-198.
58. Manoch L, Dethoup T, Yilmaz N, et al. (2013). Two new Talaromyces species from soil in Thailand. Mycoscience 54: 335-342.
59. McNeill J, Barrie FF, Buck WR, et al. (eds) (2012). International Code of Nomenclature for algae, fungi, and plants (Melbourne Code). Koeltz Scientific Books, Königstein [Regnum vegetabile no. 154.].
60. McNeill J, Turland NJ (2011). Major changes to the Code of Nomenclature- Melbourne, July 2011. Taxon 60: 1495-1497.
61. Myers N, Mittermeier RA, Mittermeier CG, et al. (2000). Biodiversity hotspots for conservation priorities. Nature 403: 853-858.
62. Novakova A, Hubka V, Saiz-Jimenez C, et al. (2012). Aspergillus baeticus sp. nov. and Aspergillus thesauricus sp. nov., two species in section Usti from Spanish caves. International Journal of Systematic and Evolutionary Microbiology 62: 2778-2785.
63. Okuda T, Klich MA, Seifert KA, et al. (2000). Media and incubation effect on morphological characteristics of Penicillium and Aspergillus. In: Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification (Samson RA, Pitt JI, eds). Harwood Academic Publishers, Amsterdam: 83-99.
64. Paden JW (1971). Three new species of Eupenicillium from soil. Mycopathologia et Mycologia applicata 43: 259-268.
65. Peterson SW (2000a). Phylogenetic analysis of Penicillium species based on ITS and LSU-rDNA nucleotide sequences. In: Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification (Samson RA, Pitt JI, eds). Harwood Academic Publishers, Amsterdam: 163-178.
66. Peterson SW (2000b). Phylogenetic relationships in Aspergillus based on rDNA sequence analysis. In: Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification (Samson RA, Pitt JI, eds). Harwood Academic Publishers, Amsterdam: 323-355.
67. Peterson SW (2008). Phylogenetic analysis of Aspergillus species using DNA sequences from four loci. Mycologia 100: 205-226.
68. Peterson SW (2012). Aspergillus and Penicillium identification using DNA sequences: barcode or MLST? Applied Microbiology and Biotechnology 95: 339-344.
69. Peterson SW, Jurjevic Z (2013). Talaromyces columbinus sp. nov., and genealogical concordance analysis in Talaromyces Clade 2a. PLoS One 8: e78084.
70. Pildain MB, Frisvad JC, Vaamonde G, et al. (2008). Two novel aflatoxinproducing Aspergillus species from Argentinean peanuts. International Journal of Systematic and Evolutionary Microbiology 58: 725-735.
71. Pitt JI (1979). The Genus Penicillium and its Teleomorphic States Eupenicillium and Talaromyces. Academic Press Inc, London.
72. Pitt JI, Hocking AD (2009). Fungi and Food Spoilage. Springer, New York.
73. Raper KB, Fennell DI (1965). The Genus Aspergillus. Williams & Wilkins, Baltimore.
74. Rivera KG, Díaz J, Chavarría-Díaz F, et al. (2012). Penicillium mallochii and P. guanacastense, two new species isolated from Costa Rican caterpillars. Mycotaxon 119: 315-328.
75. Roth Jr FJ, Orpurt PA, Ahearn DG (1964). Occurrence and distribution of fungi in a subtropical marine environment. Canadian Journal of Botany 42: 375-383.
76. Rypien KL (2008). African dust is an unlikely source of Aspergillus sydowii, the causative agent of sea fan disease. Marine Ecology Progress Series 367: 125-131.
77. Rypien KL, Andras JP, Harvell CD (2008). Globally panmictic population structure in the opportunistic fungal pathogen Aspergillus sydowii. Molecular Ecology 17: 4068-4078.
78. Samson RA, Houbraken J, Thrane U, et al. (2010). Food and Indoor Fungi. CBS Laboratory manual.
79. Samson RA, Visagie CM, Houbraken J, et al. (2014). Phylogeny, identification and nomenclature of the genus Aspergillus. Studies in Mycology 78: 141-173.
80. Samson RA, Yilmaz N, Houbraken J, et al. (2011). Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium. Studies in Mycology 70: 159-183.
81. Sang H, An T, Kim CS, et al. (2013). Two novel Talaromyces species isolated from medicinal crops in Korea. Journal of Microbiology 51: 704-708.
82. Santamaria M, Fosso B, Consiglio A, et al. (2012). Reference databases for taxonomic assignment in metagenomics. Briefings in Bioinformatics 13: 682-695.
83. Schmidt O (2007). Indoor wood-decay basidiomycetes: damage, causal fungi, physiology, identification and characterization, prevention and control. Mycological Progress 6: 261-279.
84. Schoch CL, Robbertse B, Robert V, et al. (2014). Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database 2014. http://dx.doi.org/10.1093/database/bau061.
85. Schoch CL, Seifert KA, Huhndorf S, et al. (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. PNAS 109: 6241-6246.
86. Schroeder HW, Boller RA (1973). Aflatoxin production of species and strains of the Aspergillus flavus group isolated from field crops. Applied Microbiology 25: 885-889.
87. Skouboe P, Frisvad JC, Taylor JW, et al. (1999). Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species. Mycological Research 103: 873-881.
88. Smith GW, Ives LD, Nagelkerken IA, et al. (1996). Caribbean sea-fan mortalities. Nature 383: 487.
89. Straus DC (2009). Molds, mycotoxins, and sick building syndrome. Toxicology and Industrial Health 25: 617-635.
90. Takahata Y, Hiruma M, Sugita T, et al. (2008). A case of onychomycosis due to Aspergillus sydowii diagnosed using DNA sequence analysis. Mycoses 51: 170-173.
91. Tamura K, Peterson D, Peterson N, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
92. Tanney JB, Seifert KA (2013). Rasamsonia pulvericola sp. nov., isolated from house dust. IMA Fungus 4: 205-212.
93. Terr AI (2009). Sick building syndrome: is mould the cause? Medical Mycology 47(Suppl 1): S217-S222.
94. Toledo-Hernández C, Zuluaga-Montero A, Bones-González A, et al. (2008). Fungi in healthy and diseased sea fans (Gorgonia ventalina): is Aspergillus sydowii always the pathogen? Coral Reefs 27: 707-714.
95. Varga J, Frisvad JC, Samson RA (2007). Polyphasic taxonomy of Aspergillus section Candidi based on molecular, morphological and physiological data. Studies in Mycology 59: 75-88.
96. Varga J, Frisvad JC, Samson RA (2011). Two new aflatoxin producing species, and an overview of Aspergillus section Flavi. Studies in Mycology 69: 57-80.
97. Vartivarian SE, Anaissie EJ, Bodey GP (1993). Emerging fungal pathogens in immunocompromised patients: classification, diagnosis, and management. Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 17(Suppl 2): S487-S491.
98. Visagie CM, Jacobs K (2012). Three new additions to the genus Talaromyces isolated from Atlantis sandveld fynbos soils. Persoonia 28: 14-24.
99. Visagie CM, Houbraken J, Frisvad JC, et al. (2014a). Identification and nomenclature of the genus Penicillium. Studies in Mycology 78: 343-371.
100. Visagie CM, Houbraken J, Rodriques C, et al. (2013). Five new Penicillium species in section Sclerotiora: a tribute to the Dutch Royal family. Persoonia 31: 42-62.
101. Visagie CM, Llimona X, Vila J, et al. (2012). Phylogenetic relationships and the newly discovered sexual state of Talaromyces flavovirens, comb. nov. Mycotaxon 122: 399-411.
102. Visagie CM, Roets F, Jacobs K (2009). A new species of Penicillium, P. ramulosum sp. nov., from the natural environment. Mycologia 101: 888-895.
103. Visagie CM, Varga J, Houbraken J, et al. (2014b). Ochratoxin production and taxonomy of the yellow aspergilli (Aspergillus section Circumdati). Studies in Mycology 78: 1-61.
104. Wang B, Wang L (2013). Penicillium kongii, a new terverticillate species isolated from plant leaves in China. Mycologia 105: 1547-1554.
105. Wang L, Kong HZ (2000). Penicillium ellipsoideosporum, a new species isolated from China. Mycosystema 19: 463-465.
106. White TJ, Bruns T, Lee S, et al. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: a Guide to Methods and Applications (Innis MA, Gelfand DH, Shinsky TJ, et al., eds). Academic Press Inc, New York: 315-322.
107. Wilson S, Straus D (2002). The presence of fungi associated with sick building syndrome in North American Zoological Institutions. Journal of Zoo and Wildlife Medicine 33: 322-327.
108. Yilmaz N, Houbraken J, Hoekstra ES, et al. (2012). Delimitation and characterisation of Talaromyces purpurogenus and related species. Persoonia 29: 39-54.
109. Yilmaz N, Visagie CM, Houbraken J, et al. (2014). The polyphasic taxonomy of the genus Talaromyces. Studies in Mycology 78: 175-341.