Genetic differences between Dendrobium chrysotoxum native to Northeastern and Northern regions of Thailand based on Galanthus nivalis agglutinin-related lectins and internal transcribed spacer regions of ribosomal dna

Pakistan Journal of Botany

Volumn 46, Issue 5, 2014, Pages 1561-1572

  Siripipatthan, Patthraporn ^a   Phaonakrop, Narumon ^b   Roytrakul, Sittiruk ^b   Senawong, Gulsiri ^a   Bunyatratchata, Wandee ^a   Mudalige Jayawickrama, Rasika G ^c   Sattayasai, Nison ^a  

^a KHON KAEN UNIVERSITY   (Thailand)

^b NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^c UNIVERSITY OF DUBUQUE   (United States)

Author keywords

Dendrobium chrysotoxum; Genetic differences; GNA related lectins; ITS regions

Indexed keywords

EID: 84908009280     PISSN: 05563321     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (42)

1. Akbar, F., M.A. Rabbani, M.S. Masood and Z.K. Shinwari. 2011. Genetic diversity of sesame (Sesamum Indicum L.) germplasm from Pakistan using RAPD markers. Pak. J. Bot., 43(4): 2153-2160.
2. Baldwin, B.G., M.J. Sanderson, J.M. Porter, M.F. Wojciechowski, C.S. Campbell and M.J. Donoghue. 1995. The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard., 82(2): 247-277.
3. Barre, A., E.J.M. Van Damme, W.J. Peumans and P. Rougé. 1996. Structure-function relationship of monocot mannosebinding lectins. Plant Physiol., 112: 1531-1540.
4. Bekesiova, I., J.-P. Nap and L. Mlynarova. 1999. Isolation of high quality DNA and RNA from leaves of the carnivorous plant Drosera rotundifolia. Plant Mol. Biol. Rep., 17: 269-277.
5. Bremer, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution., 42(4): 795-803.
6. Broersen, K., A.M.M. Van Teeffelen, A. Vries, A.G.J. Voragen, R.J. Hamer and H.H.J. De Jongh. 2006. Do sulfhydryl groups affect aggregation and gelation properties of ovalbumin? J. Agric. Food Chem., 54: 5166-5174.
7. Bulpitt, C.J., Y. Li, P.F. Bulpitt and J. Wang. 2007. The use of orchids in Chinese medicine. J. R. Soc. Med., 100: 558-563.
8. Catsimpoolas, N., S.K. Funk and E.W. Meyer. 1970. Thermal aggregation of glycinin subunits. Cereal Chem., 47: 331-344.
9. Charungchitrak, S., A. Petsom, P. Sangvanich and A. Karnchanatat. 2011. Antifungal and antibacterial activities of lectin from the seeds of Archidendron jiringa Nielsen. Food Chem., 126: 1025-1032.
10. Chen, Z., X. Sun and K. Tang. 2005a. Cloning and expression of a novel cDNA encoding a mannose-binding lectin from Dendrobium officinale. Toxicon., 45: 535-540.
11. Chen, Z., X. Sun and K. Tang. 2005b. Molecular cloning and characterization of a mannose-binding lectin gene from Dendrobium officinale. J. Plant Biochem. Biotech., 14: 33-36.
12. Cullen, J. (Ed.) 1992. The Orchid book: A Guide to the Identification of Cultivated Orchid Species.Cambridge University Press, Cambridge.
13. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution., 39(4): 783-791.
14. García-Ortega, L., V. De los Ríos, A. Martínez-Ruiz, M. Oñaderra, J. Lacadena, A. Martínez del Pozo and J.G. Gavilanes. 2005. Anomalous electrophoretic behavior of a very acidic protein: Ribonuclease U2. Electrophoresis, 26: 3407-3413.
15. Heth, C.A. and M.H. Bernstein. 1991. Mannose-sensitive HRP endocytosis by the retinal pigment epithelium. Exp. Eye Res., 52(1): 75-82.
16. Jamil, I., S. Qamarunnisa, A. Azhar, Z.K. Shinwari, S.I. Ali and M. Qaiser. 2014. Subfamilial relationships within solanaceae as inferred from Atpβ-rbcL intergenic spacer. Pak. J. Bot., 46(2): 585-590.
17. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16: 111-120.
18. Kong, Y., W.B. Kim, S.-Y. Kang and S.-Y. Cho. 1991. Molecular weight of major component proteins in crude saline extract of adult Paragonimus westermani. Korean J. Parasitology, 29(2): 113-120.
19. Kumar, P., V.K. Gupta, A.K. Misra, D.R. Modi and B.K. Pandy. 2009. Potential of molecular markers in plant biotechnology. Plant Omics J., 2(4): 141-162.
20. Levi, G. and VI. Teichberg. 1985. Isolation and characterization of chicken thymic electrolectin. Biochem. J., 226: 379-384.
21. Mabberley, D.J. 2008. Mabberley’s Plant-book: A Portable Dictionary of Plants, their Classification and Uses. (3rd Ed) Cambridge University Press, Cambridge.
22. Ng, T.B., J. Liu, J.H. Wong, X. Ye, S.C.W. Sze, Y. Tong and K.Y. Zhang. 2012. Review of research on Dendrobium, a prized folk medicine. Appl. Microbiol. Biotechnol., 93: 1795-1803.
23. Ola, M.S., M. Tabish, F.H. Khan and N. Banu. 2007. Purification and some properties of galectin-1 derived from water buffalo (Bubalus bubalis) brain. Cell Biol. Int., 31: 578-585.
24. Onarici, S.G. and S. Sumer. 2003. Protein and DNA in systematic biology. Turk. J. Biol., 27: 47-55.
25. Porebski, S., L.G. Bailey and B.R. Baum. 1997. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol. Biol. Rep., 15(1): 8-15.
26. Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4(4): 406-425.
27. Sattayasai, N., R. Sudmoon, S. Nuchadomrong, A. Chaveerach, A.R. Kuehnle, R.G. Mudalige-Jayawickrama and W. Bunyatratchata. 2009. Dendrobium findleyanum agglutinin: Production, localization, anti-fungal activity and gene characterization. Plant Cell Rep., 28: 1243-1252.
28. Schettler, R. (Ed.) 2006. The Dendrobiums. A.R.G. Gantner Verlag K.G., Ruggell/Liechtenstein. Simpson, M.G. 2010. Plant Systematics. (2nd Ed) Academic Press, Massachusetts.
29. Sudmoon, R., N. Sattayasai, W. Bunyatratchata, A. Chaveerach and S. Nuchadomrong. 2008. Thermostable mannosebinding lectin from Dendrobium findleyanum with activities dependent on sulfhydryl content. Acta Biochim. Biophys. Sin., 40: 811-818.
30. Sultan, M., N. Zakir, M. A. Rabbani, Z. K. Shinwari and M. S. Masood. 2013. Genetic diversity of guar (Cyamopsis tetragonoloba L.) landraces from Pakistan based on RAPD markers. Pak. J. Bot., 45(3): 865-870.
31. Takamiya, T., P. Wongsawad, N. Tajima, N. Shioda, J.F. Lu, C.L. Wen, J.B. Wu, T. Handa, H. Iijima, S. Kitanaka and T. Yukawa. 2011. Identification of Dendrobium species used for herbal medicines based on ribosomal DNA internal transcribed spacer sequence. Biol. Pharm. Bull., 34(5): 779-782.
32. Tamura, K., J. Dudley, M. Nei and S. Kumar. 2007. MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24(8): 1596-1599.
33. Tsai, C.C., C.I. Peng, S.C. Huang, P.L. Huang and C.H. Chou. 2004. Determination of the genetic relationship of Dendrobium species (Orchidaceae) in Taiwan based on the sequence of the internal transcribed spacer of ribosomal DNA. Sci Hort., 101(3): 315-325.
34. Upadhyay, S.K., S. Saurabh, R. Singh, P. Rai, N.K. Dubey, K. Chandrashekar, K.S. Negi, R. Tuli and P.K. Singh. 2011. Purification and characterization of a lectin with high hemagglutination property isolated from Allium altaicum. Protein J., 30: 374-383.
35. Van Damme, E.J.M, K. Smeets, S. Torrekens, F. Van Leuven and W.J. Peumans. 1994. Characterization and molecular cloning of mannose-binding lectins from the Orchidaceae species Listera ovata, Epipactis helleborine and Cymbidium hybrid. Eur. J. Biochem., 221: 769-777.
36. Whitney, P.L., J.T. Powell and G.L. Sanford. 1986. Oxidation and chemical modification of lung beta-galactoside-specific lectin. Biochem. J., 238(3): 683-689.
37. Wolf, W.J. and T. Tamura. 1969. Heat denaturation of Soybean 11S protein. Cereal Chem., 46(4): 331-344.
38. Wu, C.T., S.K. Gupta, A.Z.M. Wang, S.F. Lo, C.L. Kuo, Y.J. Ko, C.L. Chen, C.C. Hsieh and H.S. Tsay. 2012. Internal transcribed spacer sequence based identification and phylogenetic relationship of Herba Dendrobii. J. Food Drug Anal., 20(1): 143-151.
39. Xu, H., Z. Wang, X. Ding, K. Zhou and L. Xu. 2006. Differentiation of Dendrobium species used as “Huangcao Shihu” by rDNA ITS sequence analysis. Planta Med., 72(1): 89-92.
40. Xue, D., S. Feng, H. Zhao, H. Jiang, B. Shen, N. Shi, J. Lu, J. Liu and H. Wang. 2010. The linkage maps of Dendrobium species based on RAPD and SRAP markers. J. Genet. Genomics, 37(3): 197-204.
41. Yang, H., G.X. Chou, Z.T. Wang, Y.W. Guo, Z.B. Hu and L.S. Xu. 2004. Two new compounds from Dendrobium chrysotoxum. Helv. Chim. Acta, 87(2): 394-399.
42. Yuan, Z.Q., J.Y. Zhang and T. Liu. 2009. Phylogenetic relationship of China Dendrobium species based on the sequence of the internal transcribed spacer of ribosomal DNA. Biol. Plantarum, 53(1): 155-158.