Determination of the genetic relationship of Dendrobium species (Orchidaceae) in Taiwan based on the sequence of the internal transcribed spacer of ribosomal DNA

Scientia Horticulturae

Volumn 101, Issue 3, 2004, Pages 315-325

  Tsai, C C ^a,b   Peng, C I ^c   Huang, S C ^d   Huang, P L ^a   Chou, C H ^b,e  

^a Kaohsiung Dist Agric I   (Taiwan)

^b NATIONAL SUN YAT SEN UNIVERSITY   (Taiwan)

^c INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^d Taichung Dist Agric Improvement S ^*  (Taiwan)

^e NATIONAL PINGTUNG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Taiwan)

Author keywords

Dendrobium; Hybrid; ITS; PCR; Phylogeny; rDNA

Indexed keywords

GENETIC VARIATION; PHYLOGENY; POLYMERASE CHAIN REACTION;

ASIA; EURASIA; FAR EAST; TAIWAN;

DENDROBIUM; DENDROBIUM AURANTIACUM; DENDROBIUM CHAMELEON; DENDROBIUM CRUMENATUM; DENDROBIUM EQUITANS; DENDROBIUM FALCONERI; DENDROBIUM FURCATOPEDICELLATUM; DENDROBIUM LINAWIANUM; DENDROBIUM MIYAKEI; DENDROBIUM MONILIFORME; DENDROBIUM SOMAI; DENDROBIUM TOSAENSE; EPIGENEIUM; ORCHIDACEAE;

EID: 4143122306     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2003.11.004     Document Type: Article

References (31)

1. Baldwin B.G. Phylogenetic utility of the internal transcribed sequences of nuclear ribosomal DNA in plants: an example from the Compositae. Mol. Phylogenet. Evol. 1:1992;3-16
2. Baldwin B.G. Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution reexamined. Am. J. Bot. 80:1993;222-238
3. Barker R.F., Harberd N.P., Jarvis M.G., Flavell R.B. Structure and evolution of the intergenic region in a ribosomal DNA repeat unit of wheat. J. Mol. Biol. 201:1988;1-17
4. Bayer R.J., Soltis D.E., Soltis P.S. Phylogenetic inferences in Antennaria (Asteraceae: Gnaphalieae: Cassiniinae) based on sequences from nuclear ribosomal DNA internal transcribed spacers (ITS). Am. J. Bot. 83:1996;516-527
5. Downie S.R., Katz-Downie D.S. A molecular phylogeny of Apiaceae subfamily Apioideae: evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Am. J. Bot. 80:1996;234-251
6. Doyle J., Doyle J. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:1987;11-15
7. Hillis D.M., Dixon M.T. Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol. 66:1991;411-453
8. Kavanagh T.A., Timmis J.N. Structure of melon rDNA and nucleotide sequences of 17-25S spacer region. Theor. Appl. Genet. 76:1988;673-680
9. Kimura M. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120
10. Kiss T., Szkukalek A., Solymosy F. Nucleotide sequence of a 17S (18S) rRNA gene from tomato. Nucl. Acids Res. 17:1989;2127
11. Kiss T., Kis M., Solymosy F. Nucleotide sequence of a 25S rRNA gene from tomato. Nucl. Acids Res. 17:1989;796
12. Kumar, S., Tamura, K., Jakobsen, I.B., Nei, M., 2001. MEGA 2.1: Molecular Evolutionary Genetics Analysis Software. Arizona State University, Tempe, AZ.
13. Kuzoff R.K., Sweere J.A., Soltis D.E., Soltis P.S., Zimmer E.A. The phylogenetic potential of entire 26S rDNA sequences in plants. Mol. Biol. Evol. 15:1998;251-263
14. Lau D.T.W., Shaw P.C., Wang J., But P.P.H. Authentication of medicinal Dendrobium species by the internal transcribed spacer of ribosomal DNA. Planta Med. 67:2001;456-460
15. Lavarack, B., Harris, W., Stocker, G., 2000. Dendrobium and its relatives. Timber Press, Portland, USA.
16. Lin, T.P., 1975. Native Orchids of Taiwan, vol. 1. Department of Botany, National Taiwan University, Taipei, R.O.C., pp. 138-139.
17. Nickrent D.L., Carbondale I.L., Schuette K.P., Starr E.M. A molecular phylogeny of Arcenthobium (Viscaceae) based on nuclear ribosomal DNA internal transcribed spacer sequences. Am. J. Bot. 81:1994;1149-1160
18. Capesius I. Nucleotide sequence of the 18S-25S spacer region from mustard DNA. Nucl. Acids Res. 17:1989;7522-7522
19. Saitou N., Nei M. The Neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425
20. Sang T., Crawford D.J., Stuessy T.F. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proc. Natl. Acad. Sci. U.S.A. 92:1995;6813-6817
21. Schiebel K., Hemleben V. Nucleotide sequence of the 18S-25S spacer region from rDNA of mung bean. Nucl. Acids Res. 17:1989;2852-2852
22. Schilling E.E., Panero J.L. Phylogenetic reticulation in subtribe Helianthinae. Am. J. Bot. 83:1996;939-948
23. Simovic N., Wolyn D., Jelenkovic G. Sequence analysis of 18S ribosomal RNA gene in. Fragaria×Ananassa Duch. Cultivated octoploid strawberry Plant Mol. Biol. 18:1992;1217-1220
24. Sitnikova T., Rzhetsky A., Nei M. Interior-branch and bootstrap tests of phylogenetic trees. Mol. Biol. Evol. 12:1995;319-333
25. Su, H.J., Leou, C.S., Chen, J.J., Hu, C.Y., 2000. Orchidaceae. In: Flora of Taiwan, vol. 5, 2nd ed. Editorial Committee of the Flora of Taiwan, Taipei, pp. 839-849.
26. Suh Y., Thien L.B., Reeve H.E., Zimmer E.A. Molecular evolution and phylogenetic implications of internal sequences of nuclear ribosomal DNA in Winteraceae. Am. J. Bot. 80:1993;1042-1055
27. Sun Y., Skinner D.Z., Liang G.H., Hulbert S.H. Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA. Theor. Appl. Genet. 89:1994;26-32
28. Takaiwa F., Oono K., Sugiura M. The complete nucleotide sequence of a rice 17S rRNA gene. Nucl. Acids Res. 12:1984;5441-5448
29. Takaiwa F., Oono K., Sugiura M. Nucleotide sequence of the 17-25S spacer region from rice rDNA. Plant Mol. Biol. 4:1985a;355-364
30. Takaiwa F., Oono K., Sugiura M. The complete nucleotide sequence of a rice 25S rRNA gene. Gene. 37:1985b;255-289
31. Tsi, Z.H., Chen, S.C., Luo, Y.B., Zhu, G.H., 1999. Orchidaceae (3). In: Tsi, Z.H. (Ed.), Angiospermae, Monocotyledoneae, Flora Reipublicae Popularis Sinica. Tomus 19. Science Press, Beijing (in Chinese).