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Volumn 9, Issue 1, 2014, Pages 378-390

Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits

Author keywords

[No Author keywords available]

Indexed keywords

AGO121 PROTEIN; DNA; DNA DIRECTED RNA POLYMERASE; DNA DIRECTED RNA POLYMERASE III; MOP1 PROTEIN; RMR1 PROTEIN; RNA POLYMERASE; RNA POLYMERASE II; RNA POLYMERASE IV; RNA POLYMERASE V; SHH2A PROTEIN; SHH2B PROTEIN; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN;

EID: 84907974641     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2014.08.067     Document Type: Article
Times cited : (56)

References (64)
  • 3
    • 77955482238 scopus 로고    scopus 로고
    • Paramutation in maize: RNA mediated trans-generational gene silencing
    • Arteaga-Vazquez M.A., Chandler V.L. Paramutation in maize: RNA mediated trans-generational gene silencing. Curr. Opin. Genet. Dev. 2010, 20:156-163.
    • (2010) Curr. Opin. Genet. Dev. , vol.20 , pp. 156-163
    • Arteaga-Vazquez, M.A.1    Chandler, V.L.2
  • 5
    • 4644223650 scopus 로고    scopus 로고
    • Altered expression of the Arabidopsis ortholog of DCL affects normal plant development
    • Bellaoui M., Gruissem W. Altered expression of the Arabidopsis ortholog of DCL affects normal plant development. Planta 2004, 219:819-826.
    • (2004) Planta , vol.219 , pp. 819-826
    • Bellaoui, M.1    Gruissem, W.2
  • 6
    • 77950417414 scopus 로고    scopus 로고
    • Transgenic expression of CBBP, a CXC domain protein, establishes paramutation in maize
    • Brzeska K., Brzeski J., Smith J., Chandler V.L. Transgenic expression of CBBP, a CXC domain protein, establishes paramutation in maize. Proc. Natl. Acad. Sci. USA 2010, 107:5516-5521.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 5516-5521
    • Brzeska, K.1    Brzeski, J.2    Smith, J.3    Chandler, V.L.4
  • 7
    • 0035827346 scopus 로고    scopus 로고
    • Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
    • Cramer P., Bushnell D.A., Kornberg R.D. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001, 292:1863-1876.
    • (2001) Science , vol.292 , pp. 1863-1876
    • Cramer, P.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 10
    • 0028933852 scopus 로고
    • The Escherichia coli RNA polymerase alpha subunit: structure and function
    • Ebright R.H., Busby S. The Escherichia coli RNA polymerase alpha subunit: structure and function. Curr. Opin. Genet. Dev. 1995, 5:197-203.
    • (1995) Curr. Opin. Genet. Dev. , vol.5 , pp. 197-203
    • Ebright, R.H.1    Busby, S.2
  • 11
    • 44149124228 scopus 로고    scopus 로고
    • Cracking the RNA polymerase II CTD code
    • Egloff S., Murphy S. Cracking the RNA polymerase II CTD code. Trends Genet. 2008, 24:280-288.
    • (2008) Trends Genet. , vol.24 , pp. 280-288
    • Egloff, S.1    Murphy, S.2
  • 13
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng J.K., McCormack A.L., Yates J.R. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J.Am. Soc. Mass Spectrom. 1994, 5:976-989.
    • (1994) J.Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 14
    • 79955093180 scopus 로고    scopus 로고
    • Paramutation: a process for acquiring trans-generational regulatory states
    • Erhard K.F., Hollick J.B. Paramutation: a process for acquiring trans-generational regulatory states. Curr. Opin. Plant Biol. 2011, 14:210-216.
    • (2011) Curr. Opin. Plant Biol. , vol.14 , pp. 210-216
    • Erhard, K.F.1    Hollick, J.B.2
  • 18
    • 79960716754 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
    • Haag J.R., Pikaard C.S. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat. Rev. Mol. Cell Biol. 2011, 12:483-492.
    • (2011) Nat. Rev. Mol. Cell Biol. , vol.12 , pp. 483-492
    • Haag, J.R.1    Pikaard, C.S.2
  • 19
    • 84870942752 scopus 로고    scopus 로고
    • Invitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
    • Haag J.R., Ream T.S., Marasco M., Nicora C.D., Norbeck A.D., Pasa-Tolic L., Pikaard C.S. Invitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing. Mol. Cell 2012, 48:811-818.
    • (2012) Mol. Cell , vol.48 , pp. 811-818
    • Haag, J.R.1    Ream, T.S.2    Marasco, M.3    Nicora, C.D.4    Norbeck, A.D.5    Pasa-Tolic, L.6    Pikaard, C.S.7
  • 20
    • 70149109627 scopus 로고    scopus 로고
    • Production and processing of siRNA precursor transcripts from the highly repetitive maize genome
    • Hale C.J., Erhard K.F., Lisch D., Hollick J.B. Production and processing of siRNA precursor transcripts from the highly repetitive maize genome. PLoS Genet. 2009, 5:e1000598.
    • (2009) PLoS Genet. , vol.5 , pp. e1000598
    • Hale, C.J.1    Erhard, K.F.2    Lisch, D.3    Hollick, J.B.4
  • 21
    • 78149478886 scopus 로고    scopus 로고
    • RNA polymerase II subunits link transcription and mRNA decay to translation
    • Harel-Sharvit L., Eldad N., Haimovich G., Barkai O., Duek L., Choder M. RNA polymerase II subunits link transcription and mRNA decay to translation. Cell 2010, 143:552-563.
    • (2010) Cell , vol.143 , pp. 552-563
    • Harel-Sharvit, L.1    Eldad, N.2    Haimovich, G.3    Barkai, O.4    Duek, L.5    Choder, M.6
  • 23
    • 72549089751 scopus 로고    scopus 로고
    • A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development
    • He X.J., Hsu Y.F., Zhu S., Liu H.L., Pontes O., Zhu J., Cui X., Wang C.S., Zhu J.K. A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development. Genes Dev. 2009, 23:2717-2722.
    • (2009) Genes Dev. , vol.23 , pp. 2717-2722
    • He, X.J.1    Hsu, Y.F.2    Zhu, S.3    Liu, H.L.4    Pontes, O.5    Zhu, J.6    Cui, X.7    Wang, C.S.8    Zhu, J.K.9
  • 25
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • Herr A.J., Jensen M.B., Dalmay T., Baulcombe D.C. RNA polymerase IV directs silencing of endogenous DNA. Science 2005, 308:118-120.
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 26
    • 84867160564 scopus 로고    scopus 로고
    • The RNA polymerase II CTD coordinates transcription and RNA processing
    • Hsin J.P., Manley J.L. The RNA polymerase II CTD coordinates transcription and RNA processing. Genes Dev. 2012, 26:2119-2137.
    • (2012) Genes Dev. , vol.26 , pp. 2119-2137
    • Hsin, J.P.1    Manley, J.L.2
  • 32
    • 34249726498 scopus 로고    scopus 로고
    • Stimulation of RNA polymerase II transcript cleavage activity contributes to maintain transcriptional fidelity in yeast
    • Koyama H., Ito T., Nakanishi T., Sekimizu K. Stimulation of RNA polymerase II transcript cleavage activity contributes to maintain transcriptional fidelity in yeast. Genes Cells 2007, 12:547-559.
    • (2007) Genes Cells , vol.12 , pp. 547-559
    • Koyama, H.1    Ito, T.2    Nakanishi, T.3    Sekimizu, K.4
  • 33
    • 58849120615 scopus 로고    scopus 로고
    • PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
    • Lahmy S., Pontier D., Cavel E., Vega D., El-Shami M., Kanno T., Lagrange T. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc. Natl. Acad. Sci. USA 2009, 106:941-946.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 941-946
    • Lahmy, S.1    Pontier, D.2    Cavel, E.3    Vega, D.4    El-Shami, M.5    Kanno, T.6    Lagrange, T.7
  • 34
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 2010, 11:204-220.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 36
    • 79960960568 scopus 로고    scopus 로고
    • SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV
    • Law J.A., Vashisht A.A., Wohlschlegel J.A., Jacobsen S.E. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 2011, 7:e1002195.
    • (2011) PLoS Genet. , vol.7 , pp. e1002195
    • Law, J.A.1    Vashisht, A.A.2    Wohlschlegel, J.A.3    Jacobsen, S.E.4
  • 38
    • 33845887976 scopus 로고    scopus 로고
    • A multistep process gave rise to RNA polymerase IV of land plants
    • Luo J., Hall B.D. A multistep process gave rise to RNA polymerase IV of land plants. J.Mol. Evol. 2007, 64:101-112.
    • (2007) J.Mol. Evol. , vol.64 , pp. 101-112
    • Luo, J.1    Hall, B.D.2
  • 39
    • 79551640033 scopus 로고    scopus 로고
    • Form, function, and regulation of ARGONAUTE proteins
    • Mallory A., Vaucheret H. Form, function, and regulation of ARGONAUTE proteins. Plant Cell 2010, 22:3879-3889.
    • (2010) Plant Cell , vol.22 , pp. 3879-3889
    • Mallory, A.1    Vaucheret, H.2
  • 41
    • 0344443712 scopus 로고    scopus 로고
    • Rpb7 subunit of RNA polymerase II interacts with an RNA-binding protein involved in processing of transcripts
    • Mitsuzawa H., Kanda E., Ishihama A. Rpb7 subunit of RNA polymerase II interacts with an RNA-binding protein involved in processing of transcripts. Nucleic Acids Res. 2003, 31:4696-4701.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4696-4701
    • Mitsuzawa, H.1    Kanda, E.2    Ishihama, A.3
  • 42
    • 33644746221 scopus 로고    scopus 로고
    • RNA polymerase II subunit Rpb9 is important for transcriptional fidelity invivo
    • Nesser N.K., Peterson D.O., Hawley D.K. RNA polymerase II subunit Rpb9 is important for transcriptional fidelity invivo. Proc. Natl. Acad. Sci. USA 2006, 103:3268-3273.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 3268-3273
    • Nesser, N.K.1    Peterson, D.O.2    Hawley, D.K.3
  • 43
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera Y., Haag J.R., Ream T., Costa Nunes P., Pontes O., Pikaard C.S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 2005, 120:613-622.
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Costa Nunes, P.4    Pontes, O.5    Pikaard, C.S.6
  • 45
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • Pontier D., Yahubyan G., Vega D., Bulski A., Saez-Vasquez J., Hakimi M.A., Lerbs-Mache S., Colot V., Lagrange T. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev. 2005, 19:2030-2040.
    • (2005) Genes Dev. , vol.19 , pp. 2030-2040
    • Pontier, D.1    Yahubyan, G.2    Vega, D.3    Bulski, A.4    Saez-Vasquez, J.5    Hakimi, M.A.6    Lerbs-Mache, S.7    Colot, V.8    Lagrange, T.9
  • 46
    • 79958753423 scopus 로고    scopus 로고
    • Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize
    • Qian Y., Cheng Y., Cheng X., Jiang H., Zhu S., Cheng B. Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize. Plant Cell Rep. 2011, 30:1347-1363.
    • (2011) Plant Cell Rep. , vol.30 , pp. 1347-1363
    • Qian, Y.1    Cheng, Y.2    Cheng, X.3    Jiang, H.4    Zhu, S.5    Cheng, B.6
  • 48
    • 84908014725 scopus 로고    scopus 로고
    • Plant multisubunit RNA polymerases IV and V
    • Springer-Verlag, Berlin, Heidelberg, K. Murakami, M. Trakselis (Eds.)
    • Ream T., Haag J., Pikaard C.S. Plant multisubunit RNA polymerases IV and V. Nucleic Acid Polymerases 2014, 289-308. Springer-Verlag, Berlin, Heidelberg. K. Murakami, M. Trakselis (Eds.).
    • (2014) Nucleic Acid Polymerases , pp. 289-308
    • Ream, T.1    Haag, J.2    Pikaard, C.S.3
  • 49
    • 18244371928 scopus 로고    scopus 로고
    • Rpb4 and Rpb7: a sub-complex integral to multi-subunit RNA polymerases performs a multitude of functions
    • Sampath V., Sadhale P. Rpb4 and Rpb7: a sub-complex integral to multi-subunit RNA polymerases performs a multitude of functions. IUBMB Life 2005, 57:93-102.
    • (2005) IUBMB Life , vol.57 , pp. 93-102
    • Sampath, V.1    Sadhale, P.2
  • 50
    • 73649130942 scopus 로고    scopus 로고
    • A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes
    • Sidorenko L., Dorweiler J.E., Cigan A.M., Arteaga-Vazquez M., Vyas M., Kermicle J., Jurcin D., Brzeski J., Cai Y., Chandler V.L. A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes. PLoS Genet. 2009, 5:e1000725.
    • (2009) PLoS Genet. , vol.5 , pp. e1000725
    • Sidorenko, L.1    Dorweiler, J.E.2    Cigan, A.M.3    Arteaga-Vazquez, M.4    Vyas, M.5    Kermicle, J.6    Jurcin, D.7    Brzeski, J.8    Cai, Y.9    Chandler, V.L.10
  • 51
    • 37749038902 scopus 로고    scopus 로고
    • Dissection of silencing signal movement in Arabidopsis
    • Smith L.M., Baulcombe D.C. Dissection of silencing signal movement in Arabidopsis. Plant Signal. Behav. 2007, 2:501-502.
    • (2007) Plant Signal. Behav. , vol.2 , pp. 501-502
    • Smith, L.M.1    Baulcombe, D.C.2
  • 52
    • 34347382532 scopus 로고    scopus 로고
    • An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis
    • Smith L.M., Pontes O., Searle I., Yelina N., Yousafzai F.K., Herr A.J., Pikaard C.S., Baulcombe D.C. An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell 2007, 19:1507-1521.
    • (2007) Plant Cell , vol.19 , pp. 1507-1521
    • Smith, L.M.1    Pontes, O.2    Searle, I.3    Yelina, N.4    Yousafzai, F.K.5    Herr, A.J.6    Pikaard, C.S.7    Baulcombe, D.C.8
  • 53
    • 73649111706 scopus 로고    scopus 로고
    • Diversity of Pol IV function is defined by mutations at the maize rmr7 locus
    • Stonaker J.L., Lim J.P., Erhard K.F., Hollick J.B. Diversity of Pol IV function is defined by mutations at the maize rmr7 locus. PLoS Genet. 2009, 5:e1000706.
    • (2009) PLoS Genet. , vol.5 , pp. e1000706
    • Stonaker, J.L.1    Lim, J.P.2    Erhard, K.F.3    Hollick, J.B.4
  • 54
    • 84861176807 scopus 로고    scopus 로고
    • Functional consequences of subunit diversity in RNA polymerases II and V
    • Tan E.H., Blevins T., Ream T.S., Pikaard C.S. Functional consequences of subunit diversity in RNA polymerases II and V. Cell Reports 2012, 1:208-214.
    • (2012) Cell Reports , vol.1 , pp. 208-214
    • Tan, E.H.1    Blevins, T.2    Ream, T.S.3    Pikaard, C.S.4
  • 55
    • 79960725352 scopus 로고    scopus 로고
    • Evolutionary history of plant multisubunit RNA polymerases IV and V: subunit origins via genome-wide and segmental gene duplications, retrotransposition, and lineage-specific subfunctionalization
    • Tucker S.L., Reece J., Ream T.S., Pikaard C.S. Evolutionary history of plant multisubunit RNA polymerases IV and V: subunit origins via genome-wide and segmental gene duplications, retrotransposition, and lineage-specific subfunctionalization. Cold Spring Harb. Symp. Quant. Biol. 2010, 75:285-297.
    • (2010) Cold Spring Harb. Symp. Quant. Biol. , vol.75 , pp. 285-297
    • Tucker, S.L.1    Reece, J.2    Ream, T.S.3    Pikaard, C.S.4
  • 56
    • 0029867431 scopus 로고    scopus 로고
    • Association between 36- and 13.6-kDa alpha-like subunits of Arabidopsis thaliana RNA polymerase II
    • Ulmasov T., Larkin R.M., Guilfoyle T.J. Association between 36- and 13.6-kDa alpha-like subunits of Arabidopsis thaliana RNA polymerase II. J.Biol. Chem. 1996, 271:5085-5094.
    • (1996) J.Biol. Chem. , vol.271 , pp. 5085-5094
    • Ulmasov, T.1    Larkin, R.M.2    Guilfoyle, T.J.3
  • 58
    • 78651504121 scopus 로고    scopus 로고
    • Evolution of multisubunit RNA polymerases in the three domains of life
    • Werner F., Grohmann D. Evolution of multisubunit RNA polymerases in the three domains of life. Nat. Rev. Microbiol. 2011, 9:85-98.
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 85-98
    • Werner, F.1    Grohmann, D.2
  • 59
    • 84869489307 scopus 로고    scopus 로고
    • The role of long non-coding RNA in transcriptional gene silencing
    • Wierzbicki A.T. The role of long non-coding RNA in transcriptional gene silencing. Curr. Opin. Plant Biol. 2012, 15:517-522.
    • (2012) Curr. Opin. Plant Biol. , vol.15 , pp. 517-522
    • Wierzbicki, A.T.1
  • 60
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki A.T., Haag J.R., Pikaard C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008, 135:635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 61
    • 67349112845 scopus 로고    scopus 로고
    • RNA polymerase V transcription guides ARGONAUTE4 to chromatin
    • Wierzbicki A.T., Ream T.S., Haag J.R., Pikaard C.S. RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat. Genet. 2009, 41:630-634.
    • (2009) Nat. Genet. , vol.41 , pp. 630-634
    • Wierzbicki, A.T.1    Ream, T.S.2    Haag, J.R.3    Pikaard, C.S.4


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