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Volumn 23, Issue 20, 2014, Pages 5048-5060

Gastrointestinal microbiota of wild and inbred individuals of two house mouse subspecies assessed using high-throughput parallel pyrosequencing

Author keywords

domestication; hybrid zone; metagenomics; microbiome; Mus musculus; symbiosis

Indexed keywords

RNA 16S;

EID: 84907906359     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12909     Document Type: Article
Times cited : (61)

References (97)
  • 1
    • 84868122893 scopus 로고    scopus 로고
    • Sperm-related phenotypes implicated in both maintenance and breakdown of a natural species barrier in the house mouse
    • Albrechtova J, Albrecht T, Baird SJE, et al,. (2012) Sperm-related phenotypes implicated in both maintenance and breakdown of a natural species barrier in the house mouse. Proceedings of the Royal Society B-Biological Sciences, 279, 4803-4810.
    • (2012) Proceedings of the Royal Society B-Biological Sciences , vol.279 , pp. 4803-4810
    • Albrechtova, J.1    Albrecht, T.2    Baird, S.J.E.3
  • 4
    • 84925665102 scopus 로고    scopus 로고
    • What can the musculus/domesticus hybrid zone tell us about speciation?
    • (eds Macholán M. Baird S.J.E. Munclinger P. Piálek J.), Cambridge University Press, Cambridge.
    • Baird SJE, Macholán M, (2012) What can the musculus/domesticus hybrid zone tell us about speciation? In: Evolution of the House Mouse (eds, Macholán M, Baird SJE, Munclinger P, Piálek J,), pp. 334-372. Cambridge University Press, Cambridge.
    • (2012) Evolution of the House Mouse , pp. 334-372
    • Baird, S.J.E.1    MacHolán, M.2
  • 6
    • 84907906921 scopus 로고    scopus 로고
    • lme4: Linear mixed-effects models using S4 classes. R package version 0.999999-0.
    • Bates D, Maechler M, Bolker B, (2012) lme4: Linear mixed-effects models using S4 classes. R package version 0.999999-0. http://CRAN.R-project.org/package=lme4.
    • (2012)
    • Bates, D.1    Maechler, M.2    Bolker, B.3
  • 7
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • Benson AK, Kelly SA, Legge R, et al,. (2010) Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proceedings of the National Academy of Sciences of the United States of America, 107, 18933-18938.
    • (2010) Proceedings of the National Academy of Sciences of the United States of America , vol.107 , pp. 18933-18938
    • Benson, A.K.1    Kelly, S.A.2    Legge, R.3
  • 8
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al,. (2010a) QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7, 335-336.
    • (2010) Nature Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 9
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: A flexible tool for aligning sequences to a template alignment
    • Caporaso JG, Bittinger K, Bushman FD, et al,. (2010b) PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics, 26, 266-267.
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1    Bittinger, K.2    Bushman, F.D.3
  • 10
    • 0344898137 scopus 로고    scopus 로고
    • Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample
    • Chao A, Shen TJ, (2003) Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample. Environmental and Ecological Statistics, 10, 429-443.
    • (2003) Environmental and Ecological Statistics , vol.10 , pp. 429-443
    • Chao, A.1    Shen, T.J.2
  • 11
    • 84862684681 scopus 로고    scopus 로고
    • Intestinal commensals: Influence on immune system and tolerance to pathogens
    • Chervonsky AV, (2012) Intestinal commensals: influence on immune system and tolerance to pathogens. Current Opinion in Immunology, 24, 255-260.
    • (2012) Current Opinion in Immunology , vol.24 , pp. 255-260
    • Chervonsky, A.V.1
  • 12
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, Lauber CL, Hamady M, et al,. (2009) Bacterial community variation in human body habitats across space and time. Science, 326, 1694-1697.
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3
  • 13
    • 84889398472 scopus 로고    scopus 로고
    • John Wiley & Sons, Chichester.
    • Crawley MJ, (2007) The R Book. John Wiley & Sons, Chichester.
    • (2007) The R Book
    • Crawley, M.J.1
  • 14
    • 84866546211 scopus 로고    scopus 로고
    • Mind-altering microorganisms: The impact of the gut microbiota on brain and behaviour
    • Cryan JF, Dinan TG, (2012) Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour. Nature Reviews Neuroscience, 13, 701-712.
    • (2012) Nature Reviews Neuroscience , vol.13 , pp. 701-712
    • Cryan, J.F.1    Dinan, T.G.2
  • 16
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a Chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N, et al,. (2006) Greengenes, a Chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology, 72, 5069-5072.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 5069-5072
    • Desantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3
  • 17
    • 79953326728 scopus 로고    scopus 로고
    • Inference of selection and stochastic effects in the house mouse hybrid zone
    • Dufková P, Macholán M, Piálek J, (2011) Inference of selection and stochastic effects in the house mouse hybrid zone. Evolution, 65, 993-1010.
    • (2011) Evolution , vol.65 , pp. 993-1010
    • Dufková, P.1    MacHolán, M.2    Piálek, J.3
  • 18
    • 84872455931 scopus 로고    scopus 로고
    • The mouse hybrid zone in Central Europe: From morphology to molecules
    • Dureje L, Macholán M, Baird SJE, Piálek J, (2012) The mouse hybrid zone in Central Europe: from morphology to molecules. Folia Zoologica, 61, 308-318.
    • (2012) Folia Zoologica , vol.61 , pp. 308-318
    • Dureje, L.1    MacHolán, M.2    Baird, S.J.E.3    Piálek, J.4
  • 19
    • 82955239986 scopus 로고    scopus 로고
    • Isolation and gene flow: Inferring the speciation history of European house mice
    • Duvaux L, Belkhir K, Boulesteix M, Boursot P, (2011) Isolation and gene flow: inferring the speciation history of European house mice. Molecular Ecology, 20, 5248-5264.
    • (2011) Molecular Ecology , vol.20 , pp. 5248-5264
    • Duvaux, L.1    Belkhir, K.2    Boulesteix, M.3    Boursot, P.4
  • 21
    • 79959855078 scopus 로고    scopus 로고
    • Predicting a human gut microbiota's response to diet in gnotobiotic mice
    • Faith JJ, McNulty NP, Rey FE, Gordon JI, (2011) Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science, 333, 101-104.
    • (2011) Science , vol.333 , pp. 101-104
    • Faith, J.J.1    McNulty, N.P.2    Rey, F.E.3    Gordon, J.I.4
  • 22
    • 84870708407 scopus 로고    scopus 로고
    • Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility
    • Flachs P, Mihola O, Simecek P, et al,. (2012) Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PloS Genetics, 8, e1003044.
    • (2012) PloS Genetics , vol.8 , pp. e1003044
    • Flachs, P.1    Mihola, O.2    Simecek, P.3
  • 23
    • 84870659174 scopus 로고    scopus 로고
    • Hybrid male sterility genes in the mouse subspecific crosses
    • (eds Macholan M. Baird S.J.E. Muclinger P. Pialek J.), Cambridge University Press, Cambridge.
    • Forejt J, Pialek J, Trachtulec Z, (2012) Hybrid male sterility genes in the mouse subspecific crosses. In: Evolution of the House Mouse (eds, Macholan M, Baird SJE, Muclinger P, Pialek J,), pp. 482-503. Cambridge University Press, Cambridge.
    • (2012) Evolution of the House Mouse , pp. 482-503
    • Forejt, J.1    Pialek, J.2    Trachtulec, Z.3
  • 24
    • 84877145046 scopus 로고    scopus 로고
    • Gut-brain axis: How the microbiome influences anxiety and depression
    • Foster JA, Neufeld KA, (2013) Gut-brain axis: how the microbiome influences anxiety and depression. Trends in Neurosciences, 36, 305-312.
    • (2013) Trends in Neurosciences , vol.36 , pp. 305-312
    • Foster, J.A.1    Neufeld, K.A.2
  • 26
    • 77649138063 scopus 로고    scopus 로고
    • Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice
    • Friswell MK, Gika H, Stratford IJ, et al,. (2010) Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice. PLoS ONE, 5, e8584.
    • (2010) PLoS ONE , vol.5 , pp. e8584
    • Friswell, M.K.1    Gika, H.2    Stratford, I.J.3
  • 28
    • 0000011343 scopus 로고
    • Experimental studies on the struggle for existence I. Mixed population of two species of yeast
    • Gause GF, (1932) Experimental studies on the struggle for existence I. Mixed population of two species of yeast. Journal of Experimental Biology, 9, 389-402.
    • (1932) Journal of Experimental Biology , vol.9 , pp. 389-402
    • Gause, G.F.1
  • 29
    • 57349140938 scopus 로고    scopus 로고
    • Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes
    • Geraldes A, Basset P, Gibson B, et al,. (2008) Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes. Molecular Ecology, 17, 5349-5363.
    • (2008) Molecular Ecology , vol.17 , pp. 5349-5363
    • Geraldes, A.1    Basset, P.2    Gibson, B.3
  • 30
    • 0001181066 scopus 로고
    • Effect of normal microbial flora on intestinal surface area
    • Gordon H, Bruckner-Kardoss E, (1961) Effect of normal microbial flora on intestinal surface area. American Journal of Physiology, 201, 175-178.
    • (1961) American Journal of Physiology , vol.201 , pp. 175-178
    • Gordon, H.1    Bruckner-Kardoss, E.2
  • 31
    • 84873963720 scopus 로고    scopus 로고
    • Neonatal supplementation of processed supernatant from Lactobacillus rhamnosus GG improves allergic airway inflammation in mice later in life
    • Harb H, van Tol EAF, Heine H, et al,. (2013) Neonatal supplementation of processed supernatant from Lactobacillus rhamnosus GG improves allergic airway inflammation in mice later in life. Clinical and Experimental Allergy, 43, 353-364.
    • (2013) Clinical and Experimental Allergy , vol.43 , pp. 353-364
    • Harb, H.1    Van Tol, E.A.F.2    Heine, H.3
  • 34
    • 0035793372 scopus 로고    scopus 로고
    • Molecular analysis of commensal host-microbial relations hips in the intestine
    • Hooper LV, Wong MH, Thelin A, et al,. (2001) Molecular analysis of commensal host-microbial relations hips in the intestine. Science, 291, 881-884.
    • (2001) Science , vol.291 , pp. 881-884
    • Hooper, L.V.1    Wong, M.H.2    Thelin, A.3
  • 35
    • 84861980130 scopus 로고    scopus 로고
    • Interactions between the microbiota and the immune system
    • Hooper LV, Littman DR, Macpherson AJ, (2012) Interactions between the microbiota and the immune system. Science, 336, 1268-1273.
    • (2012) Science , vol.336 , pp. 1268-1273
    • Hooper, L.V.1    Littman, D.R.2    MacPherson, A.J.3
  • 36
    • 84877068120 scopus 로고    scopus 로고
    • CLUSTOM: A novel method for clustering 16S rRNA next generation sequences by overlap minimization
    • Hwang K, Oh J, Kim T-K, et al,. (2013) CLUSTOM: a novel method for clustering 16S rRNA next generation sequences by overlap minimization. PLoS ONE, 8, e62623.
    • (2013) PLoS ONE , vol.8 , pp. e62623
    • Hwang, K.1    Oh, J.2    Kim, T.-K.3
  • 37
    • 70350343544 scopus 로고    scopus 로고
    • Induction of intestinal Th17 cells by segmented filamentous bacteria
    • Ivanov II, Atarashi K, Manel N, et al,. (2009) Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell, 139, 485-498.
    • (2009) Cell , vol.139 , pp. 485-498
    • Ivanov, I.I.1    Atarashi, K.2    Manel, N.3
  • 38
    • 79960854386 scopus 로고    scopus 로고
    • Intestinal microbiota in healthy adults: Temporal analysis reveals individual and common core and relation to intestinal symptoms
    • Jalanka-Tuovinen J, Salonen A, Nikkila J, et al,. (2011) Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS ONE, 6, e23035.
    • (2011) PLoS ONE , vol.6 , pp. e23035
    • Jalanka-Tuovinen, J.1    Salonen, A.2    Nikkila, J.3
  • 39
    • 84862005843 scopus 로고    scopus 로고
    • Genome-wide architecture of reproductive isolation in a naturally occurring hybrid zone between Mus musculus musculus and M. M. Domesticus
    • Janousek V, Wang L, Luzynski K, et al,. (2012) Genome-wide architecture of reproductive isolation in a naturally occurring hybrid zone between Mus musculus musculus and M. m. domesticus. Molecular Ecology, 21, 3032-3047.
    • (2012) Molecular Ecology , vol.21 , pp. 3032-3047
    • Janousek, V.1    Wang, L.2    Luzynski, K.3
  • 40
    • 79959467647 scopus 로고    scopus 로고
    • Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans
    • Jumpertz R, Le DS, Turnbaugh PJ, et al,. (2011) Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. American Journal of Clinical Nutrition, 94, 58-65.
    • (2011) American Journal of Clinical Nutrition , vol.94 , pp. 58-65
    • Jumpertz, R.1    Le, D.S.2    Turnbaugh, P.J.3
  • 41
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S, (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Research, 28, 27-30.
    • (2000) Nucleic Acids Research , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 43
    • 84897617116 scopus 로고    scopus 로고
    • Wild-caught rodents retain a majority of their natural gut microbiota upon entrance into captivity
    • Kohl KD, Dearing MD, (2014) Wild-caught rodents retain a majority of their natural gut microbiota upon entrance into captivity. Environmental Microbiology Reports, 6, 191-195.
    • (2014) Environmental Microbiology Reports , vol.6 , pp. 191-195
    • Kohl, K.D.1    Dearing, M.D.2
  • 44
    • 84877077675 scopus 로고    scopus 로고
    • Quantitatively different, yet qualitatively alike: A meta-analysis of the mouse core gut microbiome with a view towards the human gut microbiome
    • Krych L, Hansen CHF, Hansen AK, van den Berg FWJ, Nielsen DS, (2013) Quantitatively different, yet qualitatively alike: a meta-analysis of the mouse core gut microbiome with a view towards the human gut microbiome. PLoS ONE, 8, e62578.
    • (2013) PLoS ONE , vol.8 , pp. e62578
    • Krych, L.1    Hansen, C.H.F.2    Hansen, A.K.3    Van Den Berg, F.W.J.4    Nielsen, D.S.5
  • 45
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    • Langille MGI, Zaneveld J, Caporaso JG, et al,. (2013) Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnology, 31, 814-821.
    • (2013) Nature Biotechnology , vol.31 , pp. 814-821
    • Langille, M.G.I.1    Zaneveld, J.2    Caporaso, J.G.3
  • 48
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology - Human gut microbes associated with obesity
    • Ley RE, Turnbaugh PJ, Klein S, Gordon JI, (2006) Microbial ecology-Human gut microbes associated with obesity. Nature, 444, 1022-1023.
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 49
    • 46249085739 scopus 로고    scopus 로고
    • Evolution of mammals and their gut microbes
    • Ley RE, Hamady M, Lozupone C, et al,. (2008) Evolution of mammals and their gut microbes. Science, 320, 1647-1651.
    • (2008) Science , vol.320 , pp. 1647-1651
    • Ley, R.E.1    Hamady, M.2    Lozupone, C.3
  • 50
    • 84875366034 scopus 로고    scopus 로고
    • The role of biogeography in shaping diversity of the intestinal microbiota in house mice
    • Linnenbrink M, Wang J, Hardouin EA, et al,. (2013) The role of biogeography in shaping diversity of the intestinal microbiota in house mice. Molecular Ecology, 22, 1904-1916.
    • (2013) Molecular Ecology , vol.22 , pp. 1904-1916
    • Linnenbrink, M.1    Wang, J.2    Hardouin, E.A.3
  • 51
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R, (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology, 71, 8228-8235.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 52
    • 28044443840 scopus 로고    scopus 로고
    • Environmental factors shape cloacal bacterial assemblages in great tit Parus major and blue tit P. Caeruleus nestlings
    • Lucas FS, Heeb P, (2005) Environmental factors shape cloacal bacterial assemblages in great tit Parus major and blue tit P. caeruleus nestlings. Journal of Avian Biology, 36, 510-516.
    • (2005) Journal of Avian Biology , vol.36 , pp. 510-516
    • Lucas, F.S.1    Heeb, P.2
  • 53
    • 0001245369 scopus 로고
    • Population ecology of some warblers of Northeastern coniferous forests
    • MacArthur RH, (1958) Population ecology of some warblers of Northeastern coniferous forests. Ecology, 39, 599-619.
    • (1958) Ecology , vol.39 , pp. 599-619
    • MacArthur, R.H.1
  • 54
    • 79953316829 scopus 로고    scopus 로고
    • Assessing multilocus introgression patterns: A case study on the mouse X chromosome in Central Europe
    • Macholán M, Baird SJE, Dufková P, et al,. (2011) Assessing multilocus introgression patterns: a case study on the mouse X chromosome in Central Europe. Evolution, 65, 1428-1446.
    • (2011) Evolution , vol.65 , pp. 1428-1446
    • MacHolán, M.1    Baird, S.J.E.2    Dufková, P.3
  • 56
    • 2942625911 scopus 로고    scopus 로고
    • Interactions between commensal intestinal bacteria and the immune system
    • Macpherson AJ, Harris NL, (2004) Interactions between commensal intestinal bacteria and the immune system. Nature Reviews Immunology, 4, 478-485.
    • (2004) Nature Reviews Immunology , vol.4 , pp. 478-485
    • MacPherson, A.J.1    Harris, N.L.2
  • 57
    • 80054927213 scopus 로고    scopus 로고
    • Microbiota and autoimmune disease: The hosted self
    • Mathis D, Benoist C, (2011) Microbiota and autoimmune disease: the hosted self. Cell Host & Microbe, 10, 297-301.
    • (2011) Cell Host & Microbe , vol.10 , pp. 297-301
    • Mathis, D.1    Benoist, C.2
  • 59
    • 0036518881 scopus 로고    scopus 로고
    • A comparison of enzymatic and molecular approaches to characterize the cellulolytic microbial ecosystems of the rumen and the cecum
    • Michalet-Doreau B, Fernandez I, Fonty G, (2002) A comparison of enzymatic and molecular approaches to characterize the cellulolytic microbial ecosystems of the rumen and the cecum. Journal of Animal Science, 80, 790-796.
    • (2002) Journal of Animal Science , vol.80 , pp. 790-796
    • Michalet-Doreau, B.1    Fernandez, I.2    Fonty, G.3
  • 61
    • 79956301905 scopus 로고    scopus 로고
    • Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
    • Muegge BD, Kuczynski J, Knights D, et al,. (2011) Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science, 332, 970-974.
    • (2011) Science , vol.332 , pp. 970-974
    • Muegge, B.D.1    Kuczynski, J.2    Knights, D.3
  • 62
    • 3042571551 scopus 로고    scopus 로고
    • Inhibition of Clostridium difficile strains by intestinal Lactobacillus species
    • Naaber P, Smidt I, Štšepetova J, et al,. (2004) Inhibition of Clostridium difficile strains by intestinal Lactobacillus species. Journal of Medical Microbiology, 53, 551-554.
    • (2004) Journal of Medical Microbiology , vol.53 , pp. 551-554
    • Naaber, P.1    Smidt, I.2    Štšepetova, J.3
  • 63
    • 79960904343 scopus 로고    scopus 로고
    • Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing
    • Nam Y-D, Jung M-J, Roh SW, Kim M-S, Bae J-W, (2011) Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing. PLoS ONE, 6, e22109.
    • (2011) PLoS ONE , vol.6 , pp. e22109
    • Nam, Y.-D.1    Jung, M.-J.2    Roh, S.W.3    Kim, M.-S.4    Bae, J.-W.5
  • 64
    • 84875910146 scopus 로고    scopus 로고
    • Diet and phylogeny shape the gut microbiota of Antarctic seals: A comparison of wild and captive animals
    • Nelson TM, Rogers TL, Carlini AR, Brown MV, (2013) Diet and phylogeny shape the gut microbiota of Antarctic seals: a comparison of wild and captive animals. Environmental Microbiology, 15, 1132-1145.
    • (2013) Environmental Microbiology , vol.15 , pp. 1132-1145
    • Nelson, T.M.1    Rogers, T.L.2    Carlini, A.R.3    Brown, M.V.4
  • 65
    • 78649978358 scopus 로고    scopus 로고
    • Evolutionary relationships of wild hominids recapitulated by gut microbial communities
    • Ochman H, Worobey M, Kuo C-H, et al,. (2010) Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biology, 8, e1000546.
    • (2010) PLoS Biology , vol.8 , pp. e1000546
    • Ochman, H.1    Worobey, M.2    Kuo, C.-H.3
  • 66
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • O'Hara AM, Shanahan F, (2006) The gut flora as a forgotten organ. Embo Reports, 7, 688-693.
    • (2006) Embo Reports , vol.7 , pp. 688-693
    • O'Hara, A.M.1    Shanahan, F.2
  • 67
    • 84907898665 scopus 로고    scopus 로고
    • vegan: Community Ecology Package. R package version 2.0-6.
    • Oksanen J, Blanchet FG, Kindt R, et al,. (2013) vegan: Community Ecology Package. R package version 2.0-6. http://CRAN.R-project.org/package=vegan
    • (2013)
    • Oksanen, J.1    Blanchet, F.G.2    Kindt, R.3
  • 68
    • 0002274807 scopus 로고
    • Development of an "altered Schaedler Flora" for NCI gnotobiotic rodents
    • Orcutt RP, Gianni FJ, Judge RJ, (1987) Development of an "Altered Schaedler Flora" for NCI gnotobiotic rodents. Microecology Therapy, 17, 59.
    • (1987) Microecology Therapy , vol.17 , pp. 59
    • Orcutt, R.P.1    Gianni, F.J.2    Judge, R.J.3
  • 69
    • 84866328214 scopus 로고    scopus 로고
    • Adaptive evolution and effective population size in wild house mice
    • Phifer-Rixey M, Bonhomme F, Boursot P, et al,. (2012) Adaptive evolution and effective population size in wild house mice. Molecular Biology and Evolution, 29, 2949-2955.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 2949-2955
    • Phifer-Rixey, M.1    Bonhomme, F.2    Boursot, P.3
  • 70
    • 39349115869 scopus 로고    scopus 로고
    • Development of unique house mouse resources suitable for evolutionary studies of speciation
    • Piálek J, Vyskočilová M, Bímové B, et al,. (2008) Development of unique house mouse resources suitable for evolutionary studies of speciation. Journal of Heredity, 99, 34-44.
    • (2008) Journal of Heredity , vol.99 , pp. 34-44
    • Piálek, J.1    Vyskočilová, M.2    Bímové, B.3
  • 71
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
    • Price MN, Dehal PS, Arkin AP, (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Molecular Biology and Evolution, 26, 1641-1650.
    • (2009) Molecular Biology and Evolution , vol.26 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 72
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, Li R, Raes J, et al,. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464, 59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3
  • 74
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria. URL.
    • R Development Core Team (2011) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/.
    • (2011) R: A Language and Environment for Statistical Computing
  • 75
    • 33749997498 scopus 로고    scopus 로고
    • Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
    • Rawls JF, Mahowald MA, Ley RE, Gordon JI, (2006) Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell, 127, 423-433.
    • (2006) Cell , vol.127 , pp. 423-433
    • Rawls, J.F.1    Mahowald, M.A.2    Ley, R.E.3    Gordon, J.I.4
  • 76
    • 84903478262 scopus 로고    scopus 로고
    • Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice
    • Rogers GB, Kozlowska J, Keeble J, et al,. (2014) Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice. Scientific Reports, 4, 5437.
    • (2014) Scientific Reports , vol.4 , pp. 5437
    • Rogers, G.B.1    Kozlowska, J.2    Keeble, J.3
  • 77
    • 79956266973 scopus 로고    scopus 로고
    • The first report on natural Enterocytozoon bieneusi and Encephalitozoon spp. Infections in wild East-European House Mice (Mus musculus musculus) and West-European House Mice (M. M. Domesticus) in a hybrid zone across the Czech Republic-Germany border
    • Sak B, Kváč M, Květonová D, Albrecht T, Piálek J, (2011) The first report on natural Enterocytozoon bieneusi and Encephalitozoon spp. infections in wild East-European House Mice (Mus musculus musculus) and West-European House Mice (M. m. domesticus) in a hybrid zone across the Czech Republic-Germany border. Veterinary Parasitology, 178, 246-250.
    • (2011) Veterinary Parasitology , vol.178 , pp. 246-250
    • Sak, B.1    Kváč, M.2    Květonová, D.3    Albrecht, T.4    Piálek, J.5
  • 78
    • 79961038719 scopus 로고    scopus 로고
    • Influence of environmental and genetic factors linked to Celiac disease risk on infant gut colonization by Bacteroides species
    • Sanchez E, De Palma G, Capilla A, et al,. (2011) Influence of environmental and genetic factors linked to Celiac disease risk on infant gut colonization by Bacteroides species. Applied and Environmental Microbiology, 77, 5316-5323.
    • (2011) Applied and Environmental Microbiology , vol.77 , pp. 5316-5323
    • Sanchez, E.1    De Palma, G.2    Capilla, A.3
  • 79
    • 17044452651 scopus 로고    scopus 로고
    • DNA methylation in placentas of interspecies mouse hybrids
    • Schütt S, Florl AR, Shi W, et al,. (2003) DNA methylation in placentas of interspecies mouse hybrids. Genetics, 165, 223-228.
    • (2003) Genetics , vol.165 , pp. 223-228
    • Schütt, S.1    Florl, A.R.2    Shi, W.3
  • 82
    • 15544376418 scopus 로고    scopus 로고
    • Glycan foraging in vivo by an intestine-adapted bacterial symbiont
    • Sonnenburg JL, Xu J, Leip DD, et al,. (2005) Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science, 307, 1955-1959.
    • (2005) Science , vol.307 , pp. 1955-1959
    • Sonnenburg, J.L.1    Xu, J.2    Leip, D.D.3
  • 83
    • 84862623932 scopus 로고    scopus 로고
    • Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
    • Staubach F, Kuenzel S, Baines AC, et al,. (2012) Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. Isme Journal, 6, 1345-1355.
    • (2012) Isme Journal , vol.6 , pp. 1345-1355
    • Staubach, F.1    Kuenzel, S.2    Baines, A.C.3
  • 85
    • 84870932266 scopus 로고    scopus 로고
    • Geographical and ecological stability of the symbiotic mid-gut microbiota in European firebugs, Pyrrhocoris apterus (Hemiptera, Pyrrhocoridae)
    • Sudakaran S, Salem H, Kost C, Kaltenpoth M, (2012) Geographical and ecological stability of the symbiotic mid-gut microbiota in European firebugs, Pyrrhocoris apterus (Hemiptera, Pyrrhocoridae). Molecular Ecology, 21, 6134-6151.
    • (2012) Molecular Ecology , vol.21 , pp. 6134-6151
    • Sudakaran, S.1    Salem, H.2    Kost, C.3    Kaltenpoth, M.4
  • 86
    • 69949111703 scopus 로고    scopus 로고
    • The core gut microbiome, energy balance and obesity
    • Turnbaugh PJ, Gordon JI, (2009) The core gut microbiome, energy balance and obesity. Journal of Physiology-London, 587, 4153-4158.
    • (2009) Journal of Physiology-London , vol.587 , pp. 4153-4158
    • Turnbaugh, P.J.1    Gordon, J.I.2
  • 87
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh PJ, Ley RE, Mahowald MA, et al,. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature, 444, 1027-1031.
    • (2006) Nature , vol.444 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3
  • 88
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh PJ, Hamady M, Yatsunenko T, et al,. (2009) A core gut microbiome in obese and lean twins. Nature, 457, 480-484.
    • (2009) Nature , vol.457 , pp. 480-484
    • Turnbaugh, P.J.1    Hamady, M.2    Yatsunenko, T.3
  • 89
    • 84856255082 scopus 로고    scopus 로고
    • Reduced male fertility is common but highly variable in form and severity in a natural house mouse hybrid zone
    • Turner LM, Schwahn DJ, Harr B, (2012) Reduced male fertility is common but highly variable in form and severity in a natural house mouse hybrid zone. Evolution, 66, 443-458.
    • (2012) Evolution , vol.66 , pp. 443-458
    • Turner, L.M.1    Schwahn, D.J.2    Harr, B.3
  • 90
    • 84866461477 scopus 로고    scopus 로고
    • Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice
    • Ubeda C, Lipuma L, Gobourne A, et al,. (2012) Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice. Journal of Experimental Medicine, 209, 1445-1456.
    • (2012) Journal of Experimental Medicine , vol.209 , pp. 1445-1456
    • Ubeda, C.1    Lipuma, L.2    Gobourne, A.3
  • 91
    • 79956349420 scopus 로고    scopus 로고
    • Reinforcement selection acting on the European house mouse hybrid zone
    • Vošlajerová-Bímová B, Macholán M, Baird SJE, et al,. (2011) Reinforcement selection acting on the European house mouse hybrid zone. Molecular Ecology, 20, 2403-2424.
    • (2011) Molecular Ecology , vol.20 , pp. 2403-2424
    • Vošlajerová-Bímová, B.1    MacHolán, M.2    Baird, S.J.E.3
  • 92
    • 79960067123 scopus 로고    scopus 로고
    • Human gut microbiota and its relationship to health and disease
    • Wallace TC, Guarner F, Madsen K, et al,. (2011) Human gut microbiota and its relationship to health and disease. Nutrition Reviews, 69, 392-403.
    • (2011) Nutrition Reviews , vol.69 , pp. 392-403
    • Wallace, T.C.1    Guarner, F.2    Madsen, K.3
  • 93
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR, (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73, 5261-5267.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 94
    • 84903722284 scopus 로고    scopus 로고
    • Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice
    • Wang J, Linnenbrink M, Künzel S, et al,. (2014) Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proceedings of the National Academy of Sciences, 111, E2703-E2710.
    • (2014) Proceedings of the National Academy of Sciences , vol.111 , pp. E2703-E2710
    • Wang, J.1    Linnenbrink, M.2    Künzel, S.3
  • 96
    • 79959735506 scopus 로고    scopus 로고
    • Subspecific origin and haplotype diversity in the laboratory mouse
    • Yang H, Wang JR, Didion JP, et al,. (2011) Subspecific origin and haplotype diversity in the laboratory mouse. Nature Genetics, 43, 648-655.
    • (2011) Nature Genetics , vol.43 , pp. 648-655
    • Yang, H.1    Wang, J.R.2    Didion, J.P.3
  • 97
    • 16344363305 scopus 로고    scopus 로고
    • Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction
    • Yu Y, Lee C, Kim J, Hwang S, (2005) Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnology and Bioengineering, 89, 670-679.
    • (2005) Biotechnology and Bioengineering , vol.89 , pp. 670-679
    • Yu, Y.1    Lee, C.2    Kim, J.3    Hwang, S.4


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