Comprehensive profiling and natural variation of flavonoids in rice

Journal of Integrative Plant Biology

Volumn 56, Issue 9, 2014, Pages 876-886

  Dong, Xuekui ^a   Chen, Wei ^a   Wang, Wensheng ^a   Zhang, Hongyan ^a   Liu, Xianqing ^a   Luo, Jie ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Flavonoids; Metabolic profiling; Natural variation; Oryza sativa; Single nucleotide polymorphisms

Indexed keywords

BIOACCUMULATION; DEVELOPMENTAL STAGE; GENE; GERMPLASM; METABOLISM; PHENOLIC COMPOUND; POLYMORPHISM; RICE;

ORYZA SATIVA;

FLAVONOID;

CLASSIFICATION; LIQUID CHROMATOGRAPHY; METABOLISM; PLANT LEAF; RICE; TANDEM MASS SPECTROMETRY;

CHROMATOGRAPHY, LIQUID; FLAVONOIDS; ORYZA SATIVA; PLANT LEAVES; TANDEM MASS SPECTROMETRY;

EID: 84907899840     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/jipb.12204     Document Type: Article

References (44)

1. Adjei-Afriyie F, Kim CS, Takemura M, Ishikawa M, Horiike M (2000) Isolation and identification of the probing stimulants in the rice plant for the white-back planthopper, Sogatella furcifera (Homoptera: Delphacidae). Biosci Biotechnol Biochem 64: 443-446
2. Berhow M (1998) Flavonoid accumulation in tissue and cell culture. In: Manthey J, Buslig B, eds. Flavonoids in the Living System. Springer, New York, NY, USA. pp. 67-84
3. Besson E, Dellamonica G, Chopin J, Markham KR, Kim M, Koh HS, Fukami H (1985) C-glycosylflavones from Oryza sativa. Phytochemistry 24: 1061-1064
4. Brazier-Hicks M, Evans KM, Gershater MC, Puschmann H, Steel PG, Edwards R (2009) The C-glycosylation of flavonoids in cereals. J Biol Chem 284: 17926-17934
5. Buer CS, Imin N, Djordjevic MA (2010) Flavonoids: New roles for old molecules. J Integr Plant Biol 52: 98-111
6. Cavaliere C, Foglia P, Pastorini E, Samperi R, Laganà A (2005) Identification and mass spectrometric characterization of glycosylated flavonoids in Triticum durum plants by high-performance liquid chromatography with tandem mass spectrometry. Rapid Commun Mass Spectrom 19: 3143-3158
7. Chan EK, Rowe HC, Kliebenstein DJ (2010) Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping. Genetics 185: 991-1007
8. Chen W, Gong L, Guo Z, Wang W, Zhang H, Liu X, Yu S, Xiong L, Luo J (2013) A novel integrated method for large-scale detection, identification, and quantification of widely targeted metabolites: Application in the study of rice metabolomics. Mol Plant 6: 1769-1780
9. Ding Z, Wang C, Chen S, Yu S (2011) Diversity and selective sweep in the OsAMT1; 1 genomic region of rice. BMC Evol Biol 11: 61
10. Dixon RA, Howles PA, Lamb C, He XZ, Reddy JT (1998) Prospects for the metabolic engineering of bioactive flavonoids and related phenylpropanoid compounds. Adv Exp Med Biol 439: 55-66
11. Dixon RA, Paiva NL (1995) Stress-induced phenylpropanoid metabolism. Plant Cell 7: 1085-1097
12. Du Y, Chu H, Chu IK, Lo C (2010) CYP93G2 is a flavanone 2-hydroxylase required for C-glycosylflavone biosynthesis in rice. Plant Physiol 154: 324-333
13. Ferreres F, Gil-Izquierdo A, Andrade PB, Valentao P, Tomas-Barberan FA (2007) Characterization of C-glycosyl flavones O-glycosylated by liquid chromatography-tandem mass spectrometry. J Chromatogr A 1161: 214-223
14. Gong L, Chen W, Gao Y, Liu X, Zhang H, Xu C, Yu S, Zhang Q, Luo J (2013) Genetic analysis of the metabolome exemplified using a rice population. Proc Natl Acad Sci USA 110: 20320-20325
15. Harborne JB, Williams CA (2000) Advances in flavonoid research since 1992. Phytochemistry 55: 481-504
16. Hirai MY, Yano M, Goodenowe DB, Kanaya S, Kimura T, Awazuhara M, Arita M, Fujiwara T, Saito K (2004) Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci USA 101: 10205-10210
17. Huang J, Zhang J, Li W, Hu W, Duan L, Feng Y, Qiu F, Yue B (2013) Genome-wide association analysis of ten chilling tolerance indices at the germination and seedling stages in maize. J Integr Plant Biol 55: 735-744
18. Isshiki R, Galis I, Tanakamaru S (2014) Farinose flavonoids are associated with high freezing tolerance in fairy primrose (Primula malacoides) plants. J Integr Plant Biol 56: 181-188
19. Izawa T, Shimamoto K (1996) Becoming a model plant: The importance of rice to plant science. Trends Plant Sci 1: 95-99
20. Ko JH, Kim BG, Kim JH, Kim H, Lim CE, Lim J, Lee C, Lim Y, Ahn JH (2008) Four glucosyltransferases from rice: cDNA cloning, expression, and characterization. J Plant Physiol 165: 435-444
21. Koes RE, Quattrocchio F, Mol JNM (1994) The flavonoid biosynthetic pathway in plants: Function and evolution. BioEssays 16: 123-132
22. Lepiniec L, Debeaujon I, Routaboul JM, Baudry A, Pourcel L, Nesi N, Caboche M (2006) Genetics and biochemistry of seed flavonoids. Annu Rev Plant Biol 57: 405-430
23. Lewis DR, Ramirez MV, Miller ND, Vallabhaneni P, Ray WK, Helm RF, Winkel BS, Muday GK (2011) Auxin and ethylene induce flavonol accumulation through distinct transcriptional networks. Plant Physiol 156: 144-164
24. Li A, Yang W, Lou X, Liu D, Sun J, Guo X, Wang J, Li Y, Zhan K, Ling HQ, Zhang A (2013) Novel natural allelic variations at the rht-1 Loci in wheat. J Integr Plant Biol 55: 1026-1037
25. Lian X, Wang S, Zhang J, Feng Q, Zhang L, Fan D, Li X, Yuan D, Han B, Zhang Q (2006) Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol Biol 60: 617-631
26. Lin LZ, Harnly JM (2007) A screening method for the identification of glycosylated flavonoids and other phenolic compounds using a standard analytical approach for all plant materials. J Agric Food Chem 55: 1084-1096
27. Matsuda F, Okazaki Y, Oikawa A, Kusano M, Nakabayashi R, Kikuchi J, Yonemaru JI, Ebana K, Yano M, Saito K (2012) Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis. Plant J 70: 624-636
28. Morishima H (1981) Phylogenetic differentiation of cultivated rice, XXII. Numerical evaluation of the indica-japonica differentiation. Jpn JBreed 31: 402-413
29. Murphy A, Peer WA, Taiz L (2000) Regulation of auxin transport by aminopeptidases and endogenous flavonoids. Planta 211: 315-324
30. Rao AS, Reddy SG, Babu PP, Reddy AR (2010) The antioxidant and antiproliferative activities of methanolic extracts from Njavara rice bran. BMC Complement Altern Med 10: 4
31. Routaboul JM, Dubos C, Beck G, Marquis C, Bidzinski P, Loudet O, Lepiniec L (2012) Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis. J Exp Bot 63: 3749-3764
32. Routaboul JM, Kerhoas L, Debeaujon I, Pourcel L, Caboche M, Einhorn J, Lepiniec L (2006) Flavonoid diversity and biosynthesis in seed of Arabidopsis thaliana. Planta 224: 96-107
33. Ryan KG, Swinny EE, Winefield C, Markham KR (2001) Flavonoids and UV photoprotection in Arabidopsis mutants. Z Naturforsch C 56: 745-754
34. Saito K, Yonekura-Sakakibara K, Nakabayashi R, Higashi Y, Yamazaki M, Tohge T, Fernie AR (2013) The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity. Plant Physiol Biochem 72: 21-34
35. Saitoh K, Onishi K, Mikami I, Thidar K, Sano Y (2004) Allelic diversification at the C (OsC1) locus of wild and cultivated rice: Nucleotide changes associated with phenotypes. Genetics 168: 997-1007
36. Schmid KJ, Ramos-Onsins S, Ringys-Beckstein H, Weisshaar B, Mitchell-Olds T (2005) A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics 169: 1601-1615
37. StobieckiM (2000) Application of mass spectrometry for identification and structural studies of flavonoid glycosides. Phytochemistry 54: 237-256
38. Taylor LP, Grotewold E (2005) Flavonoids as developmental regulators. Curr Opin Plant Biol 8: 317-323
39. Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe DB, Kitayama M, Noji M, Yamazaki M, Saito K (2005) Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J 42: 218-235
40. Winkel-Shirley B (2001) Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol 126: 485-493
41. Wojakowska A, Perkowski J, Góral T, Stobiecki M (2013) Structural characterization of flavonoid glycosides from leaves of wheat (Triticum aestivum L.) using LC/MS/MS profiling of the target compounds. J Mass Spectrom 48: 329-339
42. Yang Z, Nakabayashi R, Okazaki Y, Mori T, Takamatsu S, Kitanaka S, Kikuchi J, Saito K (2013) Toward better annotation in plant metabolomics: Isolation and structure elucidation of 36 specialized metabolites from Oryza sativa (rice) by using MS/MS and NMR analyses. Metabolomics 1-13. doi: 10.1007/s11306-013-0619-5
43. Yun CS, Yamamoto T, Nozawa A, Tozawa Y (2008) Expression of parsley flavone synthase I establishes the flavone biosynthetic pathway in Arabidopsis thaliana. Biosci Biotechnol Biochem 72: 968-973
44. Zhao J, Dixon RA (2010) The "ins" and "outs" of flavonoid transport. Trends Plant Sci 15: 72-80