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Volumn 26, Issue , 2014, Pages 48-56

A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins

Author keywords

Absolute protein quantification; E. coli; High throughput proteomics; Peptide standards; Targeted proteomics

Indexed keywords

E. COLI; PEPTIDE STANDARDS; PROTEIN QUANTIFICATION; PROTEOMICS; TARGETED PROTEOMICS;

EID: 84907866236     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2014.08.004     Document Type: Article
Times cited : (39)

References (40)
  • 1
    • 67650564834 scopus 로고    scopus 로고
    • Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
    • Addona T.A., Abbatiello S.E., Schilling B., Skates S.J., Mani D.R., Bunk D.M., Spiegelman C.H., et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat. Biotechnol. 2009, 27:633-641.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 633-641
    • Addona, T.A.1    Abbatiello, S.E.2    Schilling, B.3    Skates, S.J.4    Mani, D.R.5    Bunk, D.M.6    Spiegelman, C.H.7
  • 3
    • 23144442824 scopus 로고    scopus 로고
    • Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides
    • Beynon R.J., Doherty M.K., Pratt J.M., Gaskell S.J. Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides. Nat. Methods 2005, 2:587-589.
    • (2005) Nat. Methods , vol.2 , pp. 587-589
    • Beynon, R.J.1    Doherty, M.K.2    Pratt, J.M.3    Gaskell, S.J.4
  • 5
    • 84863792196 scopus 로고    scopus 로고
    • Tools for genome-wide strain design and construction
    • Boyle N.R., Gill R.T. Tools for genome-wide strain design and construction. Curr. Opin. Biotechnol. 2012, 23:666-671.
    • (2012) Curr. Opin. Biotechnol. , vol.23 , pp. 666-671
    • Boyle, N.R.1    Gill, R.T.2
  • 6
    • 79961202534 scopus 로고    scopus 로고
    • The importance of the digest: proteolysis and absolute quantification in proteomics
    • Brownridge P., Beynon R.J. The importance of the digest: proteolysis and absolute quantification in proteomics. Methods 2011, 54:351-360.
    • (2011) Methods , vol.54 , pp. 351-360
    • Brownridge, P.1    Beynon, R.J.2
  • 8
    • 79551600149 scopus 로고    scopus 로고
    • Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics
    • Costenoble R., Picotti P., Reiter L., Stallmach R., Heinemann M., Sauer U., Aebersold R. Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics. Mol. Syst. Biol. 2011, 7:464.
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 464
    • Costenoble, R.1    Picotti, P.2    Reiter, L.3    Stallmach, R.4    Heinemann, M.5    Sauer, U.6    Aebersold, R.7
  • 15
    • 84867218981 scopus 로고    scopus 로고
    • Innovation at the intersection of synthetic and systems biology
    • Lanza A.M., Crook N.C., Alper H.S. Innovation at the intersection of synthetic and systems biology. Curr. Opin. Biotechnol. 2012, 23 (5):712-717.
    • (2012) Curr. Opin. Biotechnol. , pp. 712-717
    • Lanza, A.M.1    Crook, N.C.2    Alper, H.S.3
  • 16
    • 33846165487 scopus 로고    scopus 로고
    • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    • Lu P., Vogel C., Wang R., Yao X., Marcotte E.M. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 2007, 25:117-124.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 117-124
    • Lu, P.1    Vogel, C.2    Wang, R.3    Yao, X.4    Marcotte, E.M.5
  • 17
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
    • MacLean B., Tomazela D.M., Shulman N., Chambers M., Finney G.L., Frewen B., Kern R., et al. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 2010, 26:966-968.
    • (2010) Bioinformatics , vol.26 , pp. 966-968
    • MacLean, B.1    Tomazela, D.M.2    Shulman, N.3    Chambers, M.4    Finney, G.L.5    Frewen, B.6    Kern, R.7
  • 21
    • 84857061668 scopus 로고    scopus 로고
    • Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast
    • Oud B., van Maris A.J., Daran J.M., Pronk J.T. Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast. FEMS Yeast Res. 2012, 12:183-196.
    • (2012) FEMS Yeast Res. , vol.12 , pp. 183-196
    • Oud, B.1    van Maris, A.J.2    Daran, J.M.3    Pronk, J.T.4
  • 22
    • 84865584319 scopus 로고    scopus 로고
    • Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins
    • Percy A.J., Chambers A.G., Yang J., Domanski D., Borchers C.H. Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins. Anal. Bioanal. Chem. 2012, 404:1089-1101.
    • (2012) Anal. Bioanal. Chem. , vol.404 , pp. 1089-1101
    • Percy, A.J.1    Chambers, A.G.2    Yang, J.3    Domanski, D.4    Borchers, C.H.5
  • 23
    • 84861990380 scopus 로고    scopus 로고
    • Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions
    • Picotti P., Aebersold R. Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions. Nat. Methods 2012, 9:555-566.
    • (2012) Nat. Methods , vol.9 , pp. 555-566
    • Picotti, P.1    Aebersold, R.2
  • 24
    • 68749094119 scopus 로고    scopus 로고
    • Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
    • Picotti P., Bodenmiller B., Mueller L.N., Domon B., Aebersold R. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 2009, 138:795-806.
    • (2009) Cell , vol.138 , pp. 795-806
    • Picotti, P.1    Bodenmiller, B.2    Mueller, L.N.3    Domon, B.4    Aebersold, R.5
  • 25
    • 84873724658 scopus 로고    scopus 로고
    • A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
    • Picotti P., Clement-Ziza M., Lam H., Campbell D.S., Schmidt A., Deutsch E.W., Rost H., et al. A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis. Nature 2013, 494:266-270.
    • (2013) Nature , vol.494 , pp. 266-270
    • Picotti, P.1    Clement-Ziza, M.2    Lam, H.3    Campbell, D.S.4    Schmidt, A.5    Deutsch, E.W.6    Rost, H.7
  • 27
    • 74049131716 scopus 로고    scopus 로고
    • High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
    • Picotti P., Rinner O., Stallmach R., Dautel F., Farrah T., Domon B., Wenschuh H., et al. High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nat. Methods 2010, 7:43-46.
    • (2010) Nat. Methods , vol.7 , pp. 43-46
    • Picotti, P.1    Rinner, O.2    Stallmach, R.3    Dautel, F.4    Farrah, T.5    Domon, B.6    Wenschuh, H.7
  • 28
    • 33847179916 scopus 로고    scopus 로고
    • Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
    • Pratt J.M., Simpson D.M., Doherty M.K., Rivers J., Gaskell S.J., Beynon R.J. Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat. Protoc. 2006, 1:1029-1043.
    • (2006) Nat. Protoc. , vol.1 , pp. 1029-1043
    • Pratt, J.M.1    Simpson, D.M.2    Doherty, M.K.3    Rivers, J.4    Gaskell, S.J.5    Beynon, R.J.6
  • 31
    • 84863900597 scopus 로고    scopus 로고
    • A computational tool to detect and avoid redundancy in selected reaction monitoring
    • Röst H., Malmström L., Aebersold R. A computational tool to detect and avoid redundancy in selected reaction monitoring. Mol. Cell. Proteomics 2012, 11(8):540-549.
    • (2012) Mol. Cell. Proteomics , vol.11 , Issue.8 , pp. 540-549
    • Röst, H.1    Malmström, L.2    Aebersold, R.3
  • 32
    • 84857062754 scopus 로고    scopus 로고
    • Fast high performance liquid chromatography separations for proteomic applications using fused-core(R) silica particles
    • Schuster S.A., Boyes B.E., Wagner B.M., Kirkland J.J. Fast high performance liquid chromatography separations for proteomic applications using fused-core(R) silica particles. J. Chromatogr. A 2012, 1228:232-241.
    • (2012) J. Chromatogr. A , vol.1228 , pp. 232-241
    • Schuster, S.A.1    Boyes, B.E.2    Wagner, B.M.3    Kirkland, J.J.4
  • 35
    • 79952645848 scopus 로고    scopus 로고
    • Informing biological design by integration of systems and synthetic biology
    • Smolke Christina D., Silver, Pamela A Informing biological design by integration of systems and synthetic biology. Cell 2011, 144:855-859.
    • (2011) Cell , vol.144 , pp. 855-859
    • Smolke, C.D.1    Silver2    Pamela, A.3
  • 37
    • 84887622083 scopus 로고    scopus 로고
    • From the first drop to the first truckload: commercialization of microbial processes for renewable chemicals
    • Van Dien S. From the first drop to the first truckload: commercialization of microbial processes for renewable chemicals. Curr. Opin. Biotechnol. 2013, 24:1061-1068.
    • (2013) Curr. Opin. Biotechnol. , vol.24 , pp. 1061-1068
    • Van Dien, S.1
  • 38
  • 40
    • 0021355340 scopus 로고
    • A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids
    • Wessel D., Flugge U.I. A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem. 1984, 138:141-143.
    • (1984) Anal. Biochem. , vol.138 , pp. 141-143
    • Wessel, D.1    Flugge, U.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.