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Volumn 404, Issue 4, 2012, Pages 1089-1101

Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins

Author keywords

Multiple reaction monitoring; Nano flow; Plasma; Quantitative proteomics; Stable isotope labeling; Standard flow

Indexed keywords

MULTIPLE REACTION MONITORING; NANO-FLOW; QUANTITATIVE PROTEOMICS; STABLE-ISOTOPE LABELING; STANDARD-FLOW;

EID: 84865584319     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-012-6010-y     Document Type: Article
Times cited : (74)

References (34)
  • 1
    • 54049083076 scopus 로고    scopus 로고
    • High-abundance polypeptides of the human plasma proteome comprising the top 4 logs of polypeptide abundance
    • 10.1373/clinchem.2008.108175 1:CAS:528:DC%2BD1cXht1CiurbN
    • GL Hortin D Sviridov NL Anderson 2008 High-abundance polypeptides of the human plasma proteome comprising the top 4 logs of polypeptide abundance Clin Chem 54 1608 1616 10.1373/clinchem.2008.108175 1:CAS:528:DC%2BD1cXht1CiurbN
    • (2008) Clin Chem , vol.54 , pp. 1608-1616
    • Hortin, G.L.1    Sviridov, D.2    Anderson, N.L.3
  • 2
    • 33645463194 scopus 로고    scopus 로고
    • Multiplexed protein measurement: Technologies and applications of protein and antibody arrays
    • 10.1038/nrd2006 1:CAS:528:DC%2BD28XjtVaksr8%3D
    • SF Kingsmore 2006 Multiplexed protein measurement: technologies and applications of protein and antibody arrays Nat Rev Drug Discov 5 310 320 10.1038/nrd2006 1:CAS:528:DC%2BD28XjtVaksr8%3D
    • (2006) Nat Rev Drug Discov , vol.5 , pp. 310-320
    • Kingsmore, S.F.1
  • 4
    • 38349068918 scopus 로고    scopus 로고
    • Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution
    • 10.1074/mcp.M700354-MCP200 1:CAS:528:DC%2BD1cXksF2hsw%3D%3D
    • H Keshishian T Addona M Burgess E Kuhn SA Carr 2007 Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution Mol Cell Proteomics 6 2212 2229 10.1074/mcp.M700354-MCP200 1:CAS:528:DC%2BD1cXksF2hsw%3D%3D
    • (2007) Mol Cell Proteomics , vol.6 , pp. 2212-2229
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Kuhn, E.4    Carr, S.A.5
  • 5
    • 78649315174 scopus 로고    scopus 로고
    • Mass-spectrometry-based clinical proteomics- A review and prospective
    • 10.1039/c0an00105h 1:CAS:528:DC%2BC3cXovFygu7k%3D
    • CE Parker TW Pearson NL Anderson CH Borchers 2010 Mass-spectrometry-based clinical proteomics- A review and prospective Analyst 135 1830 1838 10.1039/c0an00105h 1:CAS:528:DC%2BC3cXovFygu7k%3D
    • (2010) Analyst , vol.135 , pp. 1830-1838
    • Parker, C.E.1    Pearson, T.W.2    Anderson, N.L.3    Borchers, C.H.4
  • 6
    • 70549113220 scopus 로고    scopus 로고
    • Perspectives of targeted mass spectrometry for protein biomarker verification
    • 10.1016/j.cbpa.2009.09.014
    • R Huttenhain J Malmstrom P Picotti R Aebersold 2009 Perspectives of targeted mass spectrometry for protein biomarker verification Curr Opin Chem Biol 13 5-6 518 525 10.1016/j.cbpa.2009.09.014
    • (2009) Curr Opin Chem Biol , vol.13 , Issue.56 , pp. 518-525
    • Huttenhain, R.1    Malmstrom, J.2    Picotti, P.3    Aebersold, R.4
  • 7
    • 14844311934 scopus 로고    scopus 로고
    • Candidate-based proteomics in the search for biomarkers of cardiovascular disease
    • 10.1113/jphysiol.2004.080473 1:CAS:528:DC%2BD2MXitVSntLk%3D
    • L Anderson 2005 Candidate-based proteomics in the search for biomarkers of cardiovascular disease J Physiol 563 23 60 10.1113/jphysiol.2004.080473 1:CAS:528:DC%2BD2MXitVSntLk%3D
    • (2005) J Physiol , vol.563 , pp. 23-60
    • Anderson, L.1
  • 9
    • 71049137289 scopus 로고    scopus 로고
    • Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma
    • 10.1074/mcp.M800540-MCP200 1:CAS:528:DC%2BD1MXhtVSjtbjM
    • MA Kuzyk D Smith J Yang TJ Cross AM Jackson DB Hardie NL Anderson CH Borchers 2009 Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma Mol Cell Proteomics 8 8 1860 1877 10.1074/mcp.M800540-MCP200 1:CAS:528:DC%2BD1MXhtVSjtbjM
    • (2009) Mol Cell Proteomics , vol.8 , Issue.8 , pp. 1860-1877
    • Kuzyk, M.A.1    Smith, D.2    Yang, J.3    Cross, T.J.4    Jackson, A.M.5    Hardie, D.B.6    Anderson, N.L.7    Borchers, C.H.8
  • 10
    • 67449092269 scopus 로고    scopus 로고
    • Clinical quantitation of prostate-specific antigen biomarker in the low nanogram/milliliter range by conventional bore liquid chromatography-tandem mass spectrometry (multiple reaction monitoring) coupling and correlation with ELISA tests
    • 10.1074/mcp.M800238-MCP200 1:CAS:528:DC%2BD1MXmtlGqtLc%3D
    • T Fortin A Salvador JP Charrier C Lenz X Lacoux A Morla G Choquet-Kastylevsky J Lemoine 2009 Clinical quantitation of prostate-specific antigen biomarker in the low nanogram/milliliter range by conventional bore liquid chromatography-tandem mass spectrometry (multiple reaction monitoring) coupling and correlation with ELISA tests Mol Cell Proteomics 8 1006 1015 10.1074/mcp.M800238-MCP200 1:CAS:528:DC%2BD1MXmtlGqtLc%3D
    • (2009) Mol Cell Proteomics , vol.8 , pp. 1006-1015
    • Fortin, T.1    Salvador, A.2    Charrier, J.P.3    Lenz, C.4    Lacoux, X.5    Morla, A.6    Choquet-Kastylevsky, G.7    Lemoine, J.8
  • 11
    • 71049187147 scopus 로고    scopus 로고
    • Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution
    • 10.1074/mcp.M900140-MCP200 1:CAS:528:DC%2BD1MXht12qs7%2FL
    • H Keshishian T Addona M Burgess DR Mani X Shi E Kuhn MS Sabatine RE Gerszten SA Carr 2009 Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution Mol Cell Proteomics 8 2339 2349 10.1074/mcp.M900140-MCP200 1:CAS:528:DC%2BD1MXht12qs7%2FL
    • (2009) Mol Cell Proteomics , vol.8 , pp. 2339-2349
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Mani, D.R.4    Shi, X.5    Kuhn, E.6    Sabatine, M.S.7    Gerszten, R.E.8    Carr, S.A.9
  • 12
    • 76649109590 scopus 로고    scopus 로고
    • An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers
    • 10.1074/mcp.M900254-MCP200 1:CAS:528:DC%2BC3cXjtFWhs7Y%3D
    • JR Whiteaker L Zhao L Anderson AG Paulovich 2010 An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers Mol Cell Proteomics 9 184 196 10.1074/mcp.M900254-MCP200 1:CAS:528:DC%2BC3cXjtFWhs7Y%3D
    • (2010) Mol Cell Proteomics , vol.9 , pp. 184-196
    • Whiteaker, J.R.1    Zhao, L.2    Anderson, L.3    Paulovich, A.G.4
  • 13
    • 1842528125 scopus 로고    scopus 로고
    • Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards
    • 10.1002/pmic.200300670 1:CAS:528:DC%2BD2cXjt1Smtb8%3D
    • E Kuhn J Wu J Karl H Liao W Zolg B Guild 2004 Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards Proteomics 4 1175 1186 10.1002/pmic.200300670 1:CAS:528:DC%2BD2cXjt1Smtb8%3D
    • (2004) Proteomics , vol.4 , pp. 1175-1186
    • Kuhn, E.1    Wu, J.2    Karl, J.3    Liao, H.4    Zolg, W.5    Guild, B.6
  • 14
    • 41949132839 scopus 로고    scopus 로고
    • Combination of affinity depletion of abundant proteins and reversed-phase fractionation in proteomic analysis of human plasma/serum
    • 10.1016/j.chroma.2007.11.082 1:CAS:528:DC%2BD1cXkvFGmsL0%3D
    • N Zolotarjova P Mrozinski H Chen J Martosella 2008 Combination of affinity depletion of abundant proteins and reversed-phase fractionation in proteomic analysis of human plasma/serum J Chromatogr A 1189 332 338 10.1016/j.chroma.2007.11.082 1:CAS:528:DC%2BD1cXkvFGmsL0%3D
    • (2008) J Chromatogr A , vol.1189 , pp. 332-338
    • Zolotarjova, N.1    Mrozinski, P.2    Chen, H.3    Martosella, J.4
  • 15
    • 10444251074 scopus 로고    scopus 로고
    • Use of mass spectrometry to identify protein biomarkers of disease severity in the synovial fluid and serum of patients with rheumatoid arthritis
    • 10.1002/art.20720 1:CAS:528:DC%2BD2MXls1ehtA%3D%3D
    • H Liao J Wu E Kuhn W Chin B Chang MD Jones S O'Neil KR Clauser J Karl F Hasler R Roubenoff W Zolg BC Guild 2004 Use of mass spectrometry to identify protein biomarkers of disease severity in the synovial fluid and serum of patients with rheumatoid arthritis Arthritis Rheum 50 12 3792 3803 10.1002/art.20720 1:CAS:528:DC%2BD2MXls1ehtA%3D%3D
    • (2004) Arthritis Rheum , vol.50 , Issue.12 , pp. 3792-3803
    • Liao, H.1    Wu, J.2    Kuhn, E.3    Chin, W.4    Chang, B.5    Jones, M.D.6    O'Neil, S.7    Clauser, K.R.8    Karl, J.9    Hasler, F.10    Roubenoff, R.11    Zolg, W.12    Guild, B.C.13
  • 16
    • 55049086987 scopus 로고    scopus 로고
    • Use of an immunoaffinity-mass spectrometry-based approach for the quantification of protein biomarkers from serum samples of lung cancer patients
    • 10.1074/mcp.M700476-MCP200 1:CAS:528:DC%2BD1cXht1Ols7zJ
    • GR Nicol M Han J Kim CE Birse E Brand A Nguyen M Mesri W FitzHugh P Kaminker PA Moore SM Ruben T He 2008 Use of an immunoaffinity-mass spectrometry-based approach for the quantification of protein biomarkers from serum samples of lung cancer patients Mol Cell Proteomics 7 1974 1982 10.1074/mcp.M700476-MCP200 1:CAS:528:DC%2BD1cXht1Ols7zJ
    • (2008) Mol Cell Proteomics , vol.7 , pp. 1974-1982
    • Nicol, G.R.1    Han, M.2    Kim, J.3    Birse, C.E.4    Brand, E.5    Nguyen, A.6    Mesri, M.7    Fitzhugh, W.8    Kaminker, P.9    Moore, P.A.10    Ruben, S.M.11    He, T.12
  • 17
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
    • 1:CAS:528:DC%2BD28XjsVCmtb8%3D
    • L Anderson CL Hunter 2006 Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins Mol Cell Proteomics 5 4 573 588 1:CAS:528:DC%2BD28XjsVCmtb8%3D
    • (2006) Mol Cell Proteomics , vol.5 , Issue.4 , pp. 573-588
    • Anderson, L.1    Hunter, C.L.2
  • 18
    • 33747609137 scopus 로고    scopus 로고
    • Quantification of intermediate-abundance proteins in serum by multiple reaction monitoring mass spectrometry in a single-quadrupole ion trap
    • 10.1021/ac060613f 1:CAS:528:DC%2BD28XmvVGhsLc%3D
    • S Lin TA Shaler CH Becker 2006 Quantification of intermediate-abundance proteins in serum by multiple reaction monitoring mass spectrometry in a single-quadrupole ion trap Anal Chem 78 5762 5767 10.1021/ac060613f 1:CAS:528:DC%2BD28XmvVGhsLc%3D
    • (2006) Anal Chem , vol.78 , pp. 5762-5767
    • Lin, S.1    Shaler, T.A.2    Becker, C.H.3
  • 19
    • 78649834299 scopus 로고    scopus 로고
    • Simultaneous quantification of apolipoprotein a-I and apolipoprotein B by liquid-chromatography-multiple- reaction-monitoring mass spectrometry
    • 10.1373/clinchem.2010.152264 1:CAS:528:DC%2BC3cXhsF2js7%2FK
    • SA Agger LC Marney AN Hoofnagle 2010 Simultaneous quantification of apolipoprotein a-I and apolipoprotein B by liquid-chromatography-multiple- reaction-monitoring mass spectrometry Clin Chem 56 12 1804 1813 10.1373/clinchem.2010.152264 1:CAS:528:DC%2BC3cXhsF2js7%2FK
    • (2010) Clin Chem , vol.56 , Issue.12 , pp. 1804-1813
    • Agger, S.A.1    Marney, L.C.2    Hoofnagle, A.N.3
  • 20
  • 21
    • 66149151397 scopus 로고    scopus 로고
    • Increased throughput for low-abundance protein biomarker verification by liquid chromatography/tandem mass spectrometry
    • 10.1021/ac9002744 1:CAS:528:DC%2BD1MXkvFertbc%3D
    • M Berna B Ackermann 2009 Increased throughput for low-abundance protein biomarker verification by liquid chromatography/tandem mass spectrometry Anal Chem 81 3950 3956 10.1021/ac9002744 1:CAS:528:DC%2BD1MXkvFertbc%3D
    • (2009) Anal Chem , vol.81 , pp. 3950-3956
    • Berna, M.1    Ackermann, B.2
  • 24
    • 0029685702 scopus 로고    scopus 로고
    • Analytical properties of the nanoelectrospray ion source
    • 10.1021/ac9509519 1:CAS:528:DyaK2MXpslSru7k%3D
    • M Wilm M Mann 1996 Analytical properties of the nanoelectrospray ion source Anal Chem 68 1 8 10.1021/ac9509519 1:CAS:528:DyaK2MXpslSru7k%3D
    • (1996) Anal Chem , vol.68 , pp. 1-8
    • Wilm, M.1    Mann, M.2
  • 25
    • 0030026070 scopus 로고    scopus 로고
    • Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry
    • 10.1038/379466a0 1:CAS:528:DyaK28XovVagug%3D%3D
    • M Wilm A Shevchenko T Houthaeve S Breit L Schweigerer T Fotsis M Mann 1996 Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry Nature 379 6564 466 469 10.1038/379466a0 1:CAS:528:DyaK28XovVagug%3D%3D
    • (1996) Nature , vol.379 , Issue.6564 , pp. 466-469
    • Wilm, M.1    Shevchenko, A.2    Houthaeve, T.3    Breit, S.4    Schweigerer, L.5    Fotsis, T.6    Mann, M.7
  • 26
    • 77957344363 scopus 로고    scopus 로고
    • A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin
    • 10.1021/pr100656u 1:CAS:528:DC%2BC3cXhtFGru7bN
    • JL Proc MA Kuzyk DB Hardie J Yang DS Smith AM Jackson CE Parker CH Borchers 2010 A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin J Proteome Res 9 10 5422 5437 10.1021/pr100656u 1:CAS:528: DC%2BC3cXhtFGru7bN
    • (2010) J Proteome Res , vol.9 , Issue.10 , pp. 5422-5437
    • Proc, J.L.1    Kuzyk, M.A.2    Hardie, D.B.3    Yang, J.4    Smith, D.S.5    Jackson, A.M.6    Parker, C.E.7    Borchers, C.H.8
  • 27
    • 84860853284 scopus 로고    scopus 로고
    • Development of MRM based assays for plasma proteins
    • in press Backvall H (ed) Humana Press, Totowa
    • Kuzyk MA, Parker CE, Borchers CH (2012, in press) Development of MRM based assays for plasma proteins. In: Backvall H (ed) Methods in molecular biology. Humana Press, Totowa
    • (2012) Methods in Molecular Biology
    • Ma, K.1    Parker, C.E.2    Borchers, C.H.3
  • 28
    • 1442324456 scopus 로고    scopus 로고
    • Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides
    • 10.1021/ac0351163 1:CAS:528:DC%2BD2cXls1WhsQ%3D%3D
    • DL Tabb Y Huang VH Wysocki JR Yates 3rd 2004 Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides Anal Chem 76 5 1243 1248 10.1021/ac0351163 1:CAS:528:DC%2BD2cXls1WhsQ%3D%3D
    • (2004) Anal Chem , vol.76 , Issue.5 , pp. 1243-1248
    • Tabb, D.L.1    Huang, Y.2    Wysocki, V.H.3    Yates III, J.R.4
  • 29
    • 33747030845 scopus 로고    scopus 로고
    • Protein biomarker discovery and validation: The long and uncertain path to clinical utility
    • 10.1038/nbt1235 1:CAS:528:DC%2BD28XnvVygtL8%3D
    • N Rifai MA Gillette SA Carr 2006 Protein biomarker discovery and validation: the long and uncertain path to clinical utility Nat Biotechnol 24 8 971 983 10.1038/nbt1235 1:CAS:528:DC%2BD28XnvVygtL8%3D
    • (2006) Nat Biotechnol , vol.24 , Issue.8 , pp. 971-983
    • Rifai, N.1    Gillette, M.A.2    Carr, S.A.3
  • 30
    • 54049090766 scopus 로고    scopus 로고
    • Selected reaction monitoring for quantitative proteomics: A tutorial
    • 10.1038/msb.2008.61
    • V Lange P Picotti B Domon R Aebersold 2008 Selected reaction monitoring for quantitative proteomics: a tutorial Mol Syst Biol 4 222 10.1038/msb.2008.61
    • (2008) Mol Syst Biol , vol.4 , pp. 222
    • Lange, V.1    Picotti, P.2    Domon, B.3    Aebersold, R.4
  • 31
    • 0030946391 scopus 로고    scopus 로고
    • Insulin-like growth factor binding protein-1 is elevated in patients with polycythemia vera and stimulates erythroid burst formation in vitro
    • 1:CAS:528:DyaK2sXhvVakurY%3D
    • AM Mirza S Ezzat AA Axelrad 1997 Insulin-like growth factor binding protein-1 is elevated in patients with polycythemia vera and stimulates erythroid burst formation in vitro Blood 89 1862 1869 1:CAS:528: DyaK2sXhvVakurY%3D
    • (1997) Blood , vol.89 , pp. 1862-1869
    • Mirza, A.M.1    Ezzat, S.2    Axelrad, A.A.3
  • 32
    • 0023277155 scopus 로고
    • Human plasma protein Z antigen: Range in normal subjects and effect of warfarin therapy
    • 1:CAS:528:DyaL2sXktlaqsbY%3D
    • JP Miletich GJJ Broze 1987 Human plasma protein Z antigen: range in normal subjects and effect of warfarin therapy Blood 69 6 1580 1586 1:CAS:528:DyaL2sXktlaqsbY%3D
    • (1987) Blood , vol.69 , Issue.6 , pp. 1580-1586
    • Miletich, J.P.1    Broze, G.J.J.2
  • 33
    • 0037795741 scopus 로고    scopus 로고
    • Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
    • 10.1073/pnas.0832254100 1:CAS:528:DC%2BD3sXkslOnt7Y%3D
    • SA Gerber J Rush O Stemman MW Kirschner SP Gygi 2003 Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS Proc Natl Acad Sci USA 100 12 6940 6945 10.1073/pnas.0832254100 1:CAS:528:DC%2BD3sXkslOnt7Y%3D
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.12 , pp. 6940-6945
    • Gerber, S.A.1    Rush, J.2    Stemman, O.3    Kirschner, M.W.4    Gygi, S.P.5


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