-
1
-
-
23944482310
-
Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis
-
PMID: 15892871
-
Elkon R, Rashi-Elkeles S, Lerenthal Y, Linhart C, Tenne T, Amariglio N, Rechavi G, Shamir R, Shiloh Y. Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis. Genome Biol 2005; 6:R43; PMID: 15892871; http://dx.doi.org/10.1186/gb-2005-6-5-r43
-
(2005)
Genome Biol
, vol.6
, pp. R43
-
-
Elkon, R.1
Rashi-Elkeles, S.2
Lerenthal, Y.3
Linhart, C.4
Tenne, T.5
Amariglio, N.6
Rechavi, G.7
Shamir, R.8
Shiloh, Y.9
-
2
-
-
37349020973
-
Activation of inflammation/NF-kappaB signaling in infants born to arsenic-exposed mothers
-
PMID: 18039032
-
Fry RC, Navasumrit P, Valiathan C, Svensson JP, Hogan BJ, Luo M, Bhattacharya S, Kandjanapa K, Soontararuks S, Nookabkaew S, et al. Activation of inflammation/NF-kappaB signaling in infants born to arsenic-exposed mothers. PLoS Genet 2007; 3: e207; PMID: 18039032; http://dx.doi.org/10.1371/journal.pgen.0030207
-
(2007)
PLoS Genet
, vol.3
, pp. e207
-
-
Fry, R.C.1
Navasumrit, P.2
Valiathan, C.3
Svensson, J.P.4
Hogan, B.J.5
Luo, M.6
Bhattacharya, S.7
Kandjanapa, K.8
Soontararuks, S.9
Nookabkaew, S.10
-
3
-
-
0027970713
-
DNA damage triggers a prolonged p53-dependent G1 arrest and long-term induction of Cip1 in normal human fibroblasts
-
PMID: 7958916
-
Di Leonardo A, Linke SP, Clarkin K, Wahl GM. DNA damage triggers a prolonged p53-dependent G1 arrest and long-term induction of Cip1 in normal human fibroblasts. Genes Dev 1994; 8:2540-51; PMID: 7958916; http://dx.doi.org/10.1101/gad.8.21.2540
-
(1994)
Genes Dev
, vol.8
, pp. 2540-2551
-
-
Di Leonardo, A.1
Linke, S.P.2
Clarkin, K.3
Wahl, G.M.4
-
4
-
-
0032014073
-
DNA damaging agents induce expression of Fas ligand and subsequent apoptosis in T lymphocytes via the activation of NFkappa B and AP-1
-
PMID: 9660938
-
Kasibhatla S, Brunner T, Genestier L, Echeverri F, Mahboubi A, Green DR. DNA damaging agents induce expression of Fas ligand and subsequent apoptosis in T lymphocytes via the activation of NFkappa B and AP-1. Mol Cell 1998; 1:543-51; PMID: 9660938; http://dx.doi.org/10.1016/S1097-2765(00)80054-4
-
(1998)
Mol Cell
, vol.1
, pp. 543-551
-
-
Kasibhatla, S.1
Brunner, T.2
Genestier, L.3
Echeverri, F.4
Mahboubi, A.5
Green, D.R.6
-
5
-
-
0035878122
-
Selective induction of E2F1 in response to DNA damage, mediated by ATM-dependent phosphorylation
-
PMID: 11459832
-
Lin WC, Lin FT, Nevins JR. Selective induction of E2F1 in response to DNA damage, mediated by ATM-dependent phosphorylation. Genes Dev 2001;15:1833-44; PMID: 11459832
-
(2001)
Genes Dev
, vol.15
, pp. 1833-1844
-
-
Lin, W.C.1
Lin, F.T.2
Nevins, J.R.3
-
6
-
-
33846619711
-
Chk2 mediates stabilization of the FoxM1 transcription factor to stimulate expression of DNA repair genes
-
PMID: 17101782
-
Tan Y, Raychaudhuri P, Costa RH. Chk2 mediates stabilization of the FoxM1 transcription factor to stimulate expression of DNA repair genes. Mol Cell Biol 2007; 27:1007-16; PMID: 17101782; http://dx.doi.org/10.1128/MCB.01068-06
-
(2007)
Mol Cell Biol
, vol.27
, pp. 1007-1016
-
-
Tan, Y.1
Raychaudhuri, P.2
Costa, R.H.3
-
7
-
-
34250851115
-
A microRNA component of the p53 tumour suppressor network
-
PMID: 17554337
-
He L, He X, Lim LP, de Stanchina E, Xuan Z, Liang Y, Xue W, Zender L, Magnus J, Ridzon D, et al. A microRNA component of the p53 tumour suppressor network. Nature 2007; 447:1130-4; PMID: 17554337; http://dx.doi.org/10.1038/nature05939
-
(2007)
Nature
, vol.447
, pp. 1130-1134
-
-
He, L.1
He, X.2
Lim, L.P.3
De Stanchina, E.4
Xuan, Z.5
Liang, Y.6
Xue, W.7
Zender, L.8
Magnus, J.9
Ridzon, D.10
-
8
-
-
34250868124
-
Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: MiR-34a is a p53 target that induces apoptosis and G1-arrest
-
PMID: 17554199
-
Tarasov V, Jung P, Verdoodt B, Lodygin D, Epanchintsev A, Menssen A, Meister G, Hermeking H. Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest. Cell Cycle 2007; 6:1586-93; PMID: 17554199; http://dx.doi.org/10.4161/cc.6.13.4436
-
(2007)
Cell Cycle
, vol.6
, pp. 1586-1593
-
-
Tarasov, V.1
Jung, P.2
Verdoodt, B.3
Lodygin, D.4
Epanchintsev, A.5
Menssen, A.6
Meister, G.7
Hermeking, H.8
-
9
-
-
34249812122
-
MicroRNA-34a functions as a potential tumor suppressor by inducing apoptosis in neuroblastoma cells
-
PMID: 17297439
-
Welch C, Chen Y, Stallings RL. MicroRNA-34a functions as a potential tumor suppressor by inducing apoptosis in neuroblastoma cells. Oncogene 2007; 26:5017-22; PMID: 17297439; http://dx.doi.org/10.1038/sj.onc.1210293
-
(2007)
Oncogene
, vol.26
, pp. 5017-5022
-
-
Welch, C.1
Chen, Y.2
Stallings, R.L.3
-
10
-
-
49749150980
-
A functional screen identifies miR-34a as a candidate neuroblastoma tumor suppressor gene
-
PMID: 18505919
-
Cole KA, Attiyeh EF, Mosse YP, Laquaglia MJ, Diskin SJ, Brodeur GM, Maris JM. A functional screen identifies miR-34a as a candidate neuroblastoma tumor suppressor gene. Mol Cancer Res 2008; 6:735-42; PMID: 18505919; http://dx.doi.org/10.1158/1541-7786.MCR-07-2102
-
(2008)
Mol Cancer Res
, vol.6
, pp. 735-742
-
-
Cole, K.A.1
Attiyeh, E.F.2
Mosse, Y.P.3
Laquaglia, M.J.4
Diskin, S.J.5
Brodeur, G.M.6
Maris, J.M.7
-
11
-
-
51649115553
-
miR-34a repression of SIRT1 regulates apoptosis
-
PMID: 18755897
-
Yamakuchi M, Ferlito M, Lowenstein CJ. miR-34a repression of SIRT1 regulates apoptosis. Proc Natl Acad Sci U S A 2008; 105:13421-6; PMID: 18755897; http://dx.doi.org/10.1073/pnas.0801613105
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 13421-13426
-
-
Yamakuchi, M.1
Ferlito, M.2
Lowenstein, C.J.3
-
12
-
-
84872576566
-
MicroRNA-182-5p targets a network of genes involved in DNA repair
-
PMID: 23249749
-
Krishnan K, Steptoe AL, Martin HC, Wani S, Nones K, Waddell N, Mariasegaram M, Simpson PT, Lakhani SR, Gabrielli B, et al. MicroRNA-182-5p targets a network of genes involved in DNA repair. RNA 2013; 19:230-42; PMID: 23249749; http://dx.doi.org/10.1261/rna.034926.112
-
(2013)
RNA
, vol.19
, pp. 230-242
-
-
Krishnan, K.1
Steptoe, A.L.2
Martin, H.C.3
Wani, S.4
Nones, K.5
Waddell, N.6
Mariasegaram, M.7
Simpson, P.T.8
Lakhani, S.R.9
Gabrielli, B.10
-
13
-
-
67651149479
-
MicroRNA-mediated gene silencing modulates the UV-induced DNAdamage response
-
PMID: 19536137
-
Pothof J, Verkaik NS, van IW, Wiemer EA, Ta VT, van der Horst GT, Jaspers NG, van Gent DC, Hoeijmakers JH, Persengiev SP. MicroRNA-mediated gene silencing modulates the UV-induced DNAdamage response. EMBO J 2009; 28:2090-9; PMID: 19536137; http://dx.doi.org/10.1038/emboj.2009.156
-
(2009)
EMBO J
, vol.28
, pp. 2090-2099
-
-
Pothof, J.1
Verkaik, N.S.2
Van, I.W.3
Wiemer, E.A.4
Ta, V.T.5
Van Der Horst, G.T.6
Jaspers, N.G.7
Van Gent, D.C.8
Hoeijmakers, J.H.9
Persengiev, S.P.10
-
14
-
-
67749143728
-
Modulation of microRNA processing by p53
-
PMID: 19626115
-
Suzuki HI, Yamagata K, Sugimoto K, Iwamoto T, Kato S, Miyazono K. Modulation of microRNA processing by p53. Nature 2009; 460:529-33; PMID: 19626115; http://dx.doi.org/10.1038/nature08199
-
(2009)
Nature
, vol.460
, pp. 529-533
-
-
Suzuki, H.I.1
Yamagata, K.2
Sugimoto, K.3
Iwamoto, T.4
Kato, S.5
Miyazono, K.6
-
15
-
-
80052965983
-
MicroRNAs of rat articular cartilage at different developmental stages identified by Solexa sequencing
-
PMID: 21820522
-
Sun J, Zhong N, Li Q, Min Z, Zhao W, Sun Q, Tian L, Yu H, Shi Q, Zhang F, Lu S. MicroRNAs of rat articular cartilage at different developmental stages identified by Solexa sequencing. Osteoarthritis Cartilage 2011; 19:1237-45; PMID: 21820522; http://dx.doi.org/10.1016/j.joca.2011.07.002
-
(2011)
Osteoarthritis Cartilage
, vol.19
, pp. 1237-1245
-
-
Sun, J.1
Zhong, N.2
Li, Q.3
Min, Z.4
Zhao, W.5
Sun, Q.6
Tian, L.7
Yu, H.8
Shi, Q.9
Zhang, F.10
Lu, S.11
-
16
-
-
85044708445
-
Drastic expression change of transposon-derived piRNA-like RNAs and micro-RNAs in early stages of chicken embryos implies a role in gastrulation
-
PMID: 22418847
-
Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH. Drastic expression change of transposon-derived piRNA-like RNAs and micro-RNAs in early stages of chicken embryos implies a role in gastrulation. RNA Biol 2012; 9:212-27; PMID: 22418847; http://dx.doi.org/10.4161/rna.18489
-
(2012)
RNA Biol
, vol.9
, pp. 212-227
-
-
Shao, P.1
Liao, J.Y.2
Guan, D.G.3
Yang, J.H.4
Zheng, L.L.5
Jing, Q.6
Zhou, H.7
Qu, L.H.8
-
17
-
-
78149407836
-
Normalization strategies for microRNA profiling experiments: A 'normal' way to a hidden layer of complexity?
-
PMID: 20703800
-
Meyer SU, Pfaffl MW, Ulbrich SE. Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity? Biotechnol Lett 2010; 32:1777-88; PMID: 20703800; http://dx.doi.org/10.1007/s10529-010-0380-z
-
(2010)
Biotechnol Lett
, vol.32
, pp. 1777-1788
-
-
Meyer, S.U.1
Pfaffl, M.W.2
Ulbrich, S.E.3
-
18
-
-
0025784885
-
Molecular assays of radiation-induced DNA damage
-
PMID: 1834130
-
Whitaker SJ, Powell SN, McMillan TJ. Molecular assays of radiation-induced DNA damage. Eur J Cancer 1991; 27:922-8; PMID: 1834130; http://dx.doi.org/10.1016/0277-5379(91)90148-7
-
(1991)
Eur J Cancer
, vol.27
, pp. 922-928
-
-
Whitaker, S.J.1
Powell, S.N.2
McMillan, T.J.3
-
19
-
-
0025129726
-
Isolation and characterization of a spontaneously immortalized human breast epithelial cell line, MCF-10
-
PMID: 1975513
-
Soule HD, Maloney TM, Wolman SR, Peterson WD, Jr., Brenz R, McGrath CM, Russo J, Pauley RJ, Jones RF, Brooks SC. Isolation and characterization of a spontaneously immortalized human breast epithelial cell line, MCF-10. Cancer Res 1990; 50:6075-86; PMID: 1975513
-
(1990)
Cancer Res
, vol.50
, pp. 6075-6086
-
-
Soule, H.D.1
Maloney, T.M.2
Wolman, S.R.3
Peterson, W.D.4
Brenz, R.5
McGrath, C.M.6
Russo, J.7
Pauley, R.J.8
Jones, R.F.9
Brooks, S.C.10
-
20
-
-
0019451212
-
Heterogeneity of malignant cells from a human colonic carcinoma
-
PMID: 7214343
-
Brattain MG, Fine WD, Khaled FM, Thompson J, Brattain DE. Heterogeneity of malignant cells from a human colonic carcinoma. Cancer Res 1981; 41:1751-6; PMID: 7214343
-
(1981)
Cancer Res
, vol.41
, pp. 1751-1756
-
-
Brattain, M.G.1
Fine, W.D.2
Khaled, F.M.3
Thompson, J.4
Brattain, D.E.5
-
21
-
-
0037884963
-
Evidence for a lack of DNA double-strand break repair in human cells exposed to very low x-ray doses
-
PMID: 12679524
-
Rothkamm K, Lobrich M. Evidence for a lack of DNA double-strand break repair in human cells exposed to very low x-ray doses. Proc Natl Acad Sci U S A 2003; 100:5057-62; PMID: 12679524; http://dx.doi.org/10.1073/pnas.0830918100
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 5057-5062
-
-
Rothkamm, K.1
Lobrich, M.2
-
22
-
-
78651293534
-
miRBase: Integrating microRNA annotation and deep-sequencing data
-
PMID: 21037258
-
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011; 39:D152-7; PMID: 21037258; http://dx.doi.org/10.1093/nar/gkq1027
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
23
-
-
0025183708
-
Basic local alignment search tool
-
PMID: 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403-10; PMID: 2231712; http://dx.doi.org/10.1016/S0022-2836(05)80360-2
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
24
-
-
77956508095
-
MIReNA: Finding micro-RNAs with high accuracy and no learning at genome scale and from deep sequencing data
-
PMID: 20591903
-
Mathelier A, Carbone A. MIReNA: finding micro-RNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics 2010; 26:2226-34; PMID: 20591903; http://dx.doi.org/10.1093/bioinformatics/btq329
-
(2010)
Bioinformatics
, vol.26
, pp. 2226-2234
-
-
Mathelier, A.1
Carbone, A.2
-
25
-
-
55949112523
-
A human snoRNA with microRNA-like functions
-
PMID: 19026782
-
Ender C, Krek A, Friedlander MR, Beitzinger M, Weinmann L, Chen W, Pfeffer S, Rajewsky N, Meister G. A human snoRNA with microRNA-like functions. Mol Cell 2008; 32:519-28; PMID: 19026782; http://dx.doi.org/10.1016/j.molcel.2008.10.017
-
(2008)
Mol Cell
, vol.32
, pp. 519-528
-
-
Ender, C.1
Krek, A.2
Friedlander, M.R.3
Beitzinger, M.4
Weinmann, L.5
Chen, W.6
Pfeffer, S.7
Rajewsky, N.8
Meister, G.9
-
27
-
-
84867736206
-
IsomiRs - The overlooked repertoire in the dynamic micro-RNAome
-
PMID: 22883467
-
Neilsen CT, Goodall GJ, Bracken CP. IsomiRs-the overlooked repertoire in the dynamic micro-RNAome. Trends Genet 2012; 28:544-9; PMID: 22883467; http://dx.doi.org/10.1016/j.tig.2012.07.005
-
(2012)
Trends Genet
, vol.28
, pp. 544-549
-
-
Neilsen, C.T.1
Goodall, G.J.2
Bracken, C.P.3
-
28
-
-
75549092303
-
TransmiR: A transcription factor-microRNA regulation database
-
PMID: 19786497
-
Wang J, Lu M, Qiu C, Cui Q. TransmiR: a transcription factor-microRNA regulation database. Nucleic Acids Res 2010; 38:D119-22; PMID: 19786497; http://dx.doi.org/10.1093/nar/gkp803
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D119-D122
-
-
Wang, J.1
Lu, M.2
Qiu, C.3
Cui, Q.4
-
29
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
PMID: 16199517
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 2005; 102:15545-50; PMID: 16199517; http://dx.doi.org/10.1073/pnas.0506580102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
30
-
-
0032553485
-
Requirement for p53 and p21 to sustain G2 arrest after DNA damage
-
PMID: 9822382
-
Bunz F, Dutriaux A, Lengauer C, Waldman T, Zhou S, Brown JP, Sedivy JM, Kinzler KW, Vogelstein B. Requirement for p53 and p21 to sustain G2 arrest after DNA damage. Science 1998; 282:1497-501; PMID: 9822382; http://dx.doi.org/10.1126/science.282.5393.1497
-
(1998)
Science
, vol.282
, pp. 1497-1501
-
-
Bunz, F.1
Dutriaux, A.2
Lengauer, C.3
Waldman, T.4
Zhou, S.5
Brown, J.P.6
Sedivy, J.M.7
Kinzler, K.W.8
Vogelstein, B.9
-
31
-
-
77952270043
-
MicroRNA expression after ionizing radiation in human endothelial cells
-
PMID: 20346162
-
Wagner-Ecker M, Schwager C, Wirkner U, Abdollahi A, Huber PE. MicroRNA expression after ionizing radiation in human endothelial cells. Radiat Oncol 2010; 5:25; PMID: 20346162; http://dx.doi.org/10.1186/1748-717X-5-25
-
(2010)
Radiat Oncol
, vol.5
, pp. 25
-
-
Wagner-Ecker, M.1
Schwager, C.2
Wirkner, U.3
Abdollahi, A.4
Huber, P.E.5
-
32
-
-
68149161140
-
Ionizing radiation-induced oxidative stress alters miRNA expression
-
PMID: 19633716
-
Simone NL, Soule BP, Ly D, Saleh AD, Savage JE, Degraff W, Cook J, Harris CC, Gius D, Mitchell JB. Ionizing radiation-induced oxidative stress alters miRNA expression. PLoS One 2009; 4:e6377; PMID: 19633716; http://dx.doi.org/10.1371/journal.pone.0006377
-
(2009)
PLoS One
, vol.4
, pp. e6377
-
-
Simone, N.L.1
Soule, B.P.2
Ly, D.3
Saleh, A.D.4
Savage, J.E.5
Degraff, W.6
Cook, J.7
Harris, C.C.8
Gius, D.9
Mitchell, J.B.10
-
33
-
-
79953224859
-
MicroRNA expression profiles in human cancer cells after ionizing radiation
-
PMID: 21453501
-
Niemoeller OM, Niyazi M, Corradini S, Zehentmayr F, Li M, Lauber K, Belka C. MicroRNA expression profiles in human cancer cells after ionizing radiation. Radiat Oncol 2011; 6:29; PMID: 21453501; http://dx.doi.org/10.1186/1748-717X-6-29
-
(2011)
Radiat Oncol
, vol.6
, pp. 29
-
-
Niemoeller, O.M.1
Niyazi, M.2
Corradini, S.3
Zehentmayr, F.4
Li, M.5
Lauber, K.6
Belka, C.7
-
34
-
-
80755152322
-
An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs
-
PMID: 22102886
-
Huang R, Jaritz M, Guenzl P, Vlatkovic I, Sommer A, Tamir IM, Marks H, Klampfl T, Kralovics R, Stunnenberg HG, et al. An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs. PLoS One 2011; 6:e27288; PMID: 22102886; http://dx.doi.org/10.1371/journal.pone.0027288
-
(2011)
PLoS One
, vol.6
, pp. e27288
-
-
Huang, R.1
Jaritz, M.2
Guenzl, P.3
Vlatkovic, I.4
Sommer, A.5
Tamir, I.M.6
Marks, H.7
Klampfl, T.8
Kralovics, R.9
Stunnenberg, H.G.10
-
35
-
-
80052213072
-
Analysis of microRNA turnover in mammalian cells following Dicer1 ablation
-
PMID: 21447562
-
Gantier MP, McCoy CE, Rusinova I, Saulep D, Wang D, Xu D, Irving AT, Behlke MA, Hertzog PJ, Mackay F, et al. Analysis of microRNA turnover in mammalian cells following Dicer1 ablation. Nucleic Acids Res 2011; 39:5692-703; PMID: 21447562; http://dx.doi.org/10.1093/nar/gkr148
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5692-5703
-
-
Gantier, M.P.1
McCoy, C.E.2
Rusinova, I.3
Saulep, D.4
Wang, D.5
Xu, D.6
Irving, A.T.7
Behlke, M.A.8
Hertzog, P.J.9
Mackay, F.10
-
36
-
-
80055121149
-
Differential epithelium DNA damage response to ATM and DNA-PK pathway inhibition in human prostate tissue culture
-
PMID: 22030624
-
Zhang Z, Yang Z, Jaamaa S, Liu H, Pellakuru LG, Iwata T, af Hallstrom TM, De Marzo AM, Laiho M. Differential epithelium DNA damage response to ATM and DNA-PK pathway inhibition in human prostate tissue culture. Cell Cycle 2011; 10:3545-53; PMID: 22030624
-
(2011)
Cell Cycle
, vol.10
, pp. 3545-3553
-
-
Zhang, Z.1
Yang, Z.2
Jaamaa, S.3
Liu, H.4
Pellakuru, L.G.5
Iwata, T.6
Af Hallstrom, T.M.7
De Marzo, A.M.8
Laiho, M.9
-
37
-
-
84856065347
-
Expression profiling of human immune cell subsets identifies miRNA-mRNA regulatory relationships correlated with cell type specific expression
-
PMID: 22276136
-
Allantaz F, Cheng DT, Bergauer T, Ravindran P, Rossier MF, Ebeling M, Badi L, Reis B, Bitter H, D'Asaro M, et al. Expression profiling of human immune cell subsets identifies miRNA-mRNA regulatory relationships correlated with cell type specific expression. PLoS One 2012; 7:e29979; PMID: 22276136; http://dx.doi.org/10.1371/journal.pone.0029979
-
(2012)
PLoS One
, vol.7
, pp. e29979
-
-
Allantaz, F.1
Cheng, D.T.2
Bergauer, T.3
Ravindran, P.4
Rossier, M.F.5
Ebeling, M.6
Badi, L.7
Reis, B.8
Bitter, H.9
D'Asaro, M.10
-
38
-
-
79956150179
-
miR-125b is methylated and functions as a tumor suppressor by regulating the ETS1 proto-oncogene in human invasive breast cancer
-
PMID: 21444677
-
Zhang Y, Yan LX, Wu QN, Du ZM, Chen J, Liao DZ, Huang MY, Hou JH, Wu QL, Zeng MS, et al. miR-125b is methylated and functions as a tumor suppressor by regulating the ETS1 proto-oncogene in human invasive breast cancer. Cancer Res 2011; 71:3552-62; PMID: 21444677; http://dx.doi.org/10.1158/0008-5472.CAN-10-2435
-
(2011)
Cancer Res
, vol.71
, pp. 3552-3562
-
-
Zhang, Y.1
Yan, L.X.2
Wu, Q.N.3
Du, Z.M.4
Chen, J.5
Liao, D.Z.6
Huang, M.Y.7
Hou, J.H.8
Wu, Q.L.9
Zeng, M.S.10
-
39
-
-
78650762564
-
Micro-RNA-148b is frequently down-regulated in gastric cancer and acts as a tumor suppressor by inhibiting cell proliferation
-
PMID: 21205300
-
Song YX, Yue ZY, Wang ZN, Xu YY, Luo Y, Xu HM, Zhang X, Jiang L, Xing CZ, Zhang Y. Micro-RNA-148b is frequently down-regulated in gastric cancer and acts as a tumor suppressor by inhibiting cell proliferation. Mol Cancer 2011; 10:1; PMID: 21205300; http://dx.doi.org/10.1186/1476-4598-10-1
-
(2011)
Mol Cancer
, vol.10
, pp. 1
-
-
Song, Y.X.1
Yue, Z.Y.2
Wang, Z.N.3
Xu, Y.Y.4
Luo, Y.5
Xu, H.M.6
Zhang, X.7
Jiang, L.8
Xing, C.Z.9
Zhang, Y.10
-
40
-
-
84859560897
-
MiR-30a-5p suppresses tumor growth in colon carcinoma by targeting DTL
-
PMID: 22287560
-
Baraniskin A, Birkenkamp-Demtroder K, Maghnouj A, Zollner H, Munding J, Klein-Scory S, Reinacher-Schick A, Schwarte-Waldhoff I, Schmiegel W, Hahn SA. MiR-30a-5p suppresses tumor growth in colon carcinoma by targeting DTL. Carcinogenesis 2012; 33:732-9; PMID: 22287560; http://dx.doi.org/10.1093/carcin/bgs020
-
(2012)
Carcinogenesis
, vol.33
, pp. 732-739
-
-
Baraniskin, A.1
Birkenkamp-Demtroder, K.2
Maghnouj, A.3
Zollner, H.4
Munding, J.5
Klein-Scory, S.6
Reinacher-Schick, A.7
Schwarte-Waldhoff, I.8
Schmiegel, W.9
Hahn, S.A.10
-
41
-
-
80053987030
-
MiR-148a promotes apoptosis by targeting Bcl-2 in colorectal cancer
-
PMID: 21455217
-
Zhang H, Li Y, Huang Q, Ren X, Hu H, Sheng H, Lai M. MiR-148a promotes apoptosis by targeting Bcl-2 in colorectal cancer. Cell Death and Differ 2011; 1702-10; PMID: 21455217; http://dx.doi.org/10.1038/cdd.2011.28
-
(2011)
Cell Death and Differ
, pp. 1702-1710
-
-
Zhang, H.1
Li, Y.2
Huang, Q.3
Ren, X.4
Hu, H.5
Sheng, H.6
Lai, M.7
-
42
-
-
77952778499
-
MicroRNA-34a: A novel tumor suppressor in p53-mutant glioma cell line U251
-
PMID: 20470934
-
Luan S, Sun L, Huang F. MicroRNA-34a: a novel tumor suppressor in p53-mutant glioma cell line U251. Arch Med Res 2010; 41:67-74; PMID: 20470934; http://dx.doi.org/10.1016/j.arcmed.2010.02.007
-
(2010)
Arch Med Res
, vol.41
, pp. 67-74
-
-
Luan, S.1
Sun, L.2
Huang, F.3
-
43
-
-
80051590849
-
Restitution of tumor suppressor microRNAs using a systemic nanovector inhibits pancreatic cancer growth in mice
-
PMID: 21622730
-
Pramanik D, Campbell NR, Karikari C, Chivukula R, Kent OA, Mendell JT, Maitra A. Restitution of tumor suppressor microRNAs using a systemic nanovector inhibits pancreatic cancer growth in mice. Mol Cancer Ther 2011; 1470-80; PMID: 21622730; http://dx.doi.org/10.1158/1535-7163.MCT-11-0152
-
(2011)
Mol Cancer Ther
, pp. 1470-1480
-
-
Pramanik, D.1
Campbell, N.R.2
Karikari, C.3
Chivukula, R.4
Kent, O.A.5
Mendell, J.T.6
Maitra, A.7
-
44
-
-
77955033963
-
miRNA-96 suppresses KRAS and functions as a tumor suppressor gene in pancreatic cancer
-
PMID: 20610624
-
Yu S, Lu Z, Liu C, Meng Y, Ma Y, Zhao W, Liu J, Yu J, Chen J. miRNA-96 suppresses KRAS and functions as a tumor suppressor gene in pancreatic cancer. Cancer Res 2010; 70:6015-25; PMID: 20610624; http://dx.doi.org/10.1158/0008-5472.CAN-09-4531
-
(2010)
Cancer Res
, vol.70
, pp. 6015-6025
-
-
Yu, S.1
Lu, Z.2
Liu, C.3
Meng, Y.4
Ma, Y.5
Zhao, W.6
Liu, J.7
Yu, J.8
Chen, J.9
-
45
-
-
84872360829
-
MIRUMIR: An online tool to test microRNAs as biomarkers to predict survival in cancer using multiple clinical data sets
-
PMID: 23175189
-
Antonov AV, Knight RA, Melino G, Barlev NA, Tsvetkov PO. MIRUMIR: an online tool to test microRNAs as biomarkers to predict survival in cancer using multiple clinical data sets. Cell Death and Differ 2013; 20:367; PMID: 23175189; http://dx.doi.org/10.1038/cdd.2012.137
-
(2013)
Cell Death and Differ
, vol.20
, pp. 367
-
-
Antonov, A.V.1
Knight, R.A.2
Melino, G.3
Barlev, N.A.4
Tsvetkov, P.O.5
-
46
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
PMID: 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009; 10:R25; PMID: 19261174; http://dx.doi.org/10.1186/gb-2009-10-3-r25
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
47
-
-
33644750115
-
miRBase: MicroRNA sequences, targets and gene nomenclature
-
PMID: 16381832
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 2006; 34:D140-4; PMID: 16381832; http://dx.doi.org/10.1093/nar/gkj112
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D140-D144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
48
-
-
55249093237
-
Using the Basic Local Alignment Search Tool (BLAST)
-
pdb top17; PMID: 21357135
-
Mount DW. Using the Basic Local Alignment Search Tool (BLAST). CSH Protoc 2007; 2007:pdb top17; PMID: 21357135
-
(2007)
CSH Protoc
, vol.2007
-
-
Mount, D.W.1
-
49
-
-
75549083247
-
JASPAR 2010: The greatly expanded open-access database of transcription factor binding profiles
-
PMID: 19906716
-
Portales-Casamar E, Thongjuea S, Kwon AT, Arenillas D, Zhao X, Valen E, Yusuf D, Lenhard B, Wasserman WW, Sandelin A. JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res 2010; 38:D105-10; PMID: 19906716; http://dx.doi.org/10.1093/nar/gkp950
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D105-D110
-
-
Portales-Casamar, E.1
Thongjuea, S.2
Kwon, A.T.3
Arenillas, D.4
Zhao, X.5
Valen, E.6
Yusuf, D.7
Lenhard, B.8
Wasserman, W.W.9
Sandelin, A.10
-
50
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
PMID: 16381825
-
Matys V, Kel-Margoulis OV, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, et al. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res 2006; 34: D108-10; PMID: 16381825; http://dx.doi.org/10.1093/nar/gkj143
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D108-D110
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
Barre-Dirrie, A.6
Reuter, I.7
Chekmenev, D.8
Krull, M.9
Hornischer, K.10
-
51
-
-
36048948489
-
Fine-tuning enhancer models to predict transcriptional targets across multiple genomes
-
PMID: 17973026
-
Aerts S, van Helden J, Sand O, Hassan BA. Fine-tuning enhancer models to predict transcriptional targets across multiple genomes. PLoS One 2007; 2:e1115; PMID: 17973026; http://dx.doi.org/10.1371/journal.pone.0001115
-
(2007)
PLoS One
, vol.2
, pp. e1115
-
-
Aerts, S.1
Van Helden, J.2
Sand, O.3
Hassan, B.A.4
-
52
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
PMID: 16680138
-
Aerts S, Lambrechts D, Maity S, Van Loo P, Coessens B, De Smet F, Tranchevent LC, De Moor B, Marynen P, Hassan B, et al. Gene prioritization through genomic data fusion. Nat Biotechnol 2006; 24:537-44; PMID: 16680138; http://dx.doi.org/10.1038/nbt1203
-
(2006)
Nat Biotechnol
, vol.24
, pp. 537-544
-
-
Aerts, S.1
Lambrechts, D.2
Maity, S.3
Van Loo, P.4
Coessens, B.5
De Smet, F.6
Tranchevent, L.C.7
De Moor, B.8
Marynen, P.9
Hassan, B.10
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