Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

Plant Journal

Volumn 79, Issue 6, 2014, Pages 993-1008

  Evans, Joseph ^a   Kim, Jeongwoon ^a   Childs, Kevin L ^a   Vaillancourt, Brieanne ^a   Crisovan, Emily ^a   Nandety, Aruna ^b,c,e   Gerhardt, Daniel J ^d   Richmond, Todd A ^d   Jeddeloh, Jeffrey A ^d   Kaeppler, Shawn M ^b   Casler, Michael D ^b,c   Buell, C Robin ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c U S DAIRY FORAGE RESEARCH CENTER   (United States)

^d Roche NimbleGen Inc   (United States)

^e UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

copy number variant; exome; Panicum virgatum; polyploidy; presence absence variant; switchgrass

Indexed keywords

GENES; LANDFORMS; NUCLEOTIDES; PROBES;

COPY NUMBER; EXOME; PANICUM VIRGATUM; POLYPLOIDY; PRESENCE/ABSENCE; SWITCHGRASS;

PLANTS (BOTANY);

ALLELE; COPY NUMBER VARIATION; DNA SEQUENCE; ECOTYPE; EXOME; GENETIC VARIATION; GENETICS; GENOTYPE; HIGH THROUGHPUT SEQUENCING; NUCLEOTIDE SEQUENCE; PANICUM; PLANT GENOME; POLYPLOIDY; SINGLE NUCLEOTIDE POLYMORPHISM;

ALLELES; BASE SEQUENCE; DNA COPY NUMBER VARIATIONS; ECOTYPE; EXOME; GENETIC VARIATION; GENOME, PLANT; GENOTYPE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; PANICUM; POLYMORPHISM, SINGLE NUCLEOTIDE; POLYPLOIDY; SEQUENCE ANALYSIS, DNA;

EID: 84907004737     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12601     Document Type: Article

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