Global disulfide bond profiling for crude snake venom using dimethyl labeling coupled with mass spectrometry and radar algorithm

Analytical Chemistry

Volumn 86, Issue 17, 2014, Pages 8742-8750

  Huang, Sheng Yu ^a   Chen, Sung Fang ^b   Chen, Chun Hao ^b   Huang, Hsuan Wei ^c,d   Wu, Wen Guey ^d   Sung, Wang Chou ^c  

^a Mithra Biotechnology Inc   (Taiwan)

^b NATIONAL TAIWAN NORMAL UNIVERSITY   (Taiwan)

^c NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

^d NATIONAL TSING HUA UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; AMINO ACIDS; COVALENT BONDS; MASS SPECTROMETRY; MIXTURES; RADAR; SULFUR COMPOUNDS;

BIOLOGICAL FUNCTIONS; CYTOTOXINS; DISULFIDE BONDS; DISULFIDE LINKAGES; LC-MS/MS; PROTEIN MIXTURES; PROTEIN SEPARATIONS; SNAKE VENOMS;

PROTEINS;

CNIDARIAN VENOMS; CYTOLYSIN III (STOICHACTIS HELIANTHUS); DISULFIDES; PEPTIDES; SNAKE VENOMS;

ALGORITHMS; AMINO ACID SEQUENCE; CHEMISTRY; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DATABASES, PROTEIN; ISOMERISM; TANDEM MASS SPECTROMETRY;

ALGORITHMS; AMINO ACID SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CNIDARIAN VENOMS; DATABASES, PROTEIN; DISULFIDES; ISOMERISM; PEPTIDES; SNAKE VENOMS; TANDEM MASS SPECTROMETRY;

EID: 84906871618     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac501931t     Document Type: Article

References (40)

1. Mobli, M.; King, G. F. Toxicon 2010, 56, 849-854
2. Betz, S. F. Protein Sci. 1993, 2, 1551-1558
3. Mamathambika, B. S.; Bardwell, J. C. Annu. Rev. Cell Dev. Biol. 2008, 24, 211-235
4. Pellizzari, R.; Rossetto, O.; Lozzi, L.; Giovedi, S.; Johnson, E.; Shone, C. C.; Montecucco, C. J. Biol. Chem. 1996, 271, 20353-20358
5. Harvey, A. L.; Bradley, K. N.; Cochran, S. A.; Rowan, E. G.; Pratt, J. A.; Quillfeldt, J. A.; Jerusalinsky, D. A. Toxicon 1998, 36, 1635-1640
6. Welker, S.; Markert, Y.; Köditz, J.; Mansfeld, J.; Ulbrich-Hofmann, R. Biochimie 2011, 93, 195-201
7. Fadel, V.; Bettendorffa, P.; Herrmanna, T.; Jr, W. F. d. A.; Oliveirac, E. B.; Yamaned, T.; Wüthrich, K. Toxicon 2005, 46, 759-767
8. Zhang, W.; Marzilli, L. A.; Rouse, J. C.; Czupryn, M. J. Anal. Biochem. 2002, 311, 1-9
9. Yen, T. Y.; Yan, H.; Macher, B. A. J. Mass Spectrom. 2002, 37, 15-30
10. Liu, H.; Chumsae, C.; Gaza-Bulseco, G.; Hurkmans, K.; Radziejewski, C. H. Anal. Chem. 2010, 82, 5219-5226
11. Patterson, S. D.; Katta, V. Anal. Chem. 1994, 66, 3727-3732
12. Schnaible, V.; Wefing, S.; Resemann, A.; Suckau, D.; Bucker, A.; Wolf-Kummeth, S.; Hoffmann, D. Anal. Chem. 2002, 74, 4980-4988
13. Chrisman, P. A.; McLuckey, S. A. J. Proteome Res. 2002, 1, 549-557
14. Zhang, M.; Kaltashov, I. A. Anal. Chem. 2006, 78, 4820-4829
15. Wu, S. L.; Jiang, H. T.; Lu, Q. Z.; Dai, S. J.; Hancock, W. S.; Karger, B. L. Anal. Chem. 2009, 81, 112-122
16. Wang, Y.; Lu, Q. Z.; Wu, S. L.; Karger, B. L.; Hancock, W. S. Anal. Chem. 2011, 83, 3133-3140
17. Fukuyama, Y.; Iwamoto, S.; Tanaka, K. J. Mass Spectrom. 2006, 41, 191-201
18. Xu, H.; Freitas, M. A. BMC Bioinf. 2007, 8. DOI: 10.1186/1471-2105-8-133.
19. Choi, S.; Jeong, J.; Na, S.; Lee, H. S.; Kim, H. Y.; Lee, K. J.; Paek, E. J. Proteome Res. 2010, 9, 626-635
20. Murad, W.; Singh, R.; Yen, T.-Y. BMC Bioinf. 2011, 12. DOI: 10.1186/1471-2105-12-S1-S12.
21. Bhattacharyya, M.; Gupta, K.; Gowd, K. H.; Balaram, P. Mol. Biosyst. 2013, 9, 1340-1350
22. Wefing, S.; Schnaible, V.; Hoffmann, D. Anal. Chem. 2006, 78, 1235-1241
23. Gorman, J. J.; Wallis, T. P.; Pitt, J. J. Mass Spectrom. Rev. 2002, 21, 183-216
24. Tsai, P. L.; Chen, S.-F.; Huang, S. Y. Rev. Anal. Chem. 2013, 32, 257-268
25. Hsu, J. L.; Huang, S. Y.; Chow, N. H.; Chen, S. H. Anal. Chem. 2003, 75, 6843-6852
26. Huang, S. Y.; Wen, C. H.; Li, D. T.; Hsu, J. L.; Chen, C.; Shi, F. K.; Lin, Y. Y. Anal. Chem. 2008, 80, 9135-9140
27. Huang, S. Y.; Hsieh, Y. T.; Chen, C. H.; Chen, C. C.; Sung, W. C.; Chou, M. Y.; Chen, S. F. Anal. Chem. 2012, 84, 4900-4906
28. Lo, T. B.; Chen, Y. H.; Lee, C. Y. J. Chin. Chem. Soc. 1966, 13, 25
29. Bougis, P. E.; Marchot, P.; Rochat, H. Biochemistry 1986, 25, 7235-7243
30. Jiang, Y.; Li, Y.; Lee, W.; Xu, X.; Zhang, Y.; Zhao, R.; Zhang, Y.; Wang, W. BMC Genomics 2011, 12
31. Hsu, J. L.; Huang, S. Y.; Shiea, J. T.; Huang, W. Y.; Chen, S. H. J. Proteome Res. 2005, 4, 101-108
32. Jiang, C.; Xiong, W.; Lu, B.-Y.; Gonda, M. A.; Chang, J.-Y. Biochemistry 2010, 49, 6550-6556
33. Narita, K.; Lee, C. Y. Biochem. Biophys. Res. Commun. 1970, 41, 339-343
34. Nawarak, J.; Sinchaikul, S.; Wu, C. Y.; Liau, M. Y.; Phutrakul, S.; Chen, S. T. Electrophoresis 2003, 24, 2838-2854
35. Wang, A. H. J.; Yang, C. C. J. Biol. Chem. 1981, 256, 9279-9282
36. Wu, P. l.; Chen, C. B.; Guan, H. H.; Chen, C. J.; Wu, W. G. FASEB J. 2007, 21, A268-A268
37. Kaneda, N.; Hamaguchi, M.; Kojima, K.; Kaneshima, H.; Hayashi, K. FEBS Lett. 1985, 192, 313-316
38. Anbazhagan, V.; Reddy, P. S.; Yu, C. Toxin Rev. 2007, 26, 203-229
39. Wang, F.; Li, H.; Liu, M. N.; Song, H.; Han, H. M.; Wang, Q. L.; Yin, C. C.; Zhou, Y. C.; Qi, Z.; Shu, Y. Y.; Lin, Z. J.; Jiang, T. Biochem. Biophys. Res. Commun. 2006, 351, 443-448
40. Chang, J. Y.; Kumar, T. K. S.; Yu, C. Biochemistry 1998, 37, 6745-6751