-
1
-
-
0019322245
-
DNA methylation and the frequency of CpG in animal DNA
-
Bird AP. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res 1980, 8(7):1499-1504.
-
(1980)
Nucleic Acids Res
, vol.8
, Issue.7
, pp. 1499-1504
-
-
Bird, A.P.1
-
2
-
-
0019198357
-
Mutagenic deamination of cytosine residues in DNA
-
Duncan BK, Miller JH. Mutagenic deamination of cytosine residues in DNA. Nature 1980, 287(5782):560-561.
-
(1980)
Nature
, vol.287
, Issue.5782
, pp. 560-561
-
-
Duncan, B.K.1
Miller, J.H.2
-
3
-
-
0035839057
-
The role of DNA methylation in mammalian epigenetics
-
Jones PA, Takai D. The role of DNA methylation in mammalian epigenetics. Science 2001, 293(5532):1068-1070.
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1068-1070
-
-
Jones, P.A.1
Takai, D.2
-
4
-
-
3042701155
-
Epigenomics: beyond CpG islands
-
Fazzari MJ, Greally JM. Epigenomics: beyond CpG islands. Nat Rev Genet 2004, 5(6):446-455.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.6
, pp. 446-455
-
-
Fazzari, M.J.1
Greally, J.M.2
-
5
-
-
0025299347
-
The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model
-
Sved J, Bird A. The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc Natl Acad Sci U S A 1990, 87(12):4692-4696.
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, Issue.12
, pp. 4692-4696
-
-
Sved, J.1
Bird, A.2
-
6
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder JA, Walsh CP, Bestor TH. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 1997, 13(8):335-340.
-
(1997)
Trends Genet
, vol.13
, Issue.8
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
7
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, et al. Initial sequencing and analysis of the human genome. Nature 2001, 409(6822):860-921.
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
LeVine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
more..
-
8
-
-
0035183199
-
Determinants of CpG islands: expression in early embryo and isochore structure
-
Ponger L, Duret L, Mouchiroud D. Determinants of CpG islands: expression in early embryo and isochore structure. Genome Res 2001, 11(11):1854-1860.
-
(2001)
Genome Res
, vol.11
, Issue.11
, pp. 1854-1860
-
-
Ponger, L.1
Duret, L.2
Mouchiroud, D.3
-
9
-
-
79957577720
-
Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection
-
Cohen NM, Kenigsberg E, Tanay A. Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection. Cell 2011, 145(5):773-786.
-
(2011)
Cell
, vol.145
, Issue.5
, pp. 773-786
-
-
Cohen, N.M.1
Kenigsberg, E.2
Tanay, A.3
-
10
-
-
2442651458
-
Recombination drives the evolution of GC-content in the human genome
-
Meunier J, Duret L. Recombination drives the evolution of GC-content in the human genome. Mol Biol Evol 2004, 21(6):984-990.
-
(2004)
Mol Biol Evol
, vol.21
, Issue.6
, pp. 984-990
-
-
Meunier, J.1
Duret, L.2
-
11
-
-
0034766004
-
GC-content evolution in mammalian genomes: the biased gene conversion hypothesis
-
Galtier N, Piganeau G, Mouchiroud D, Duret L. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics 2001, 159(2):907-911.
-
(2001)
Genetics
, vol.159
, Issue.2
, pp. 907-911
-
-
Galtier, N.1
Piganeau, G.2
Mouchiroud, D.3
Duret, L.4
-
12
-
-
0023216891
-
CpG islands in vertebrate genomes
-
Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol 1987, 196(2):261-282.
-
(1987)
J Mol Biol
, vol.196
, Issue.2
, pp. 261-282
-
-
Gardiner-Garden, M.1
Frommer, M.2
-
13
-
-
31944432339
-
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
-
Saxonov S, Berg P, Brutlag DL. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc Natl Acad Sci U S A 2006, 103(5):1412-1417.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.5
, pp. 1412-1417
-
-
Saxonov, S.1
Berg, P.2
Brutlag, D.L.3
-
14
-
-
13544254591
-
Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance
-
Semon M, Mouchiroud D, Duret L. Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance. Hum Mol Genet 2005, 14(3):421-427.
-
(2005)
Hum Mol Genet
, vol.14
, Issue.3
, pp. 421-427
-
-
Semon, M.1
Mouchiroud, D.2
Duret, L.3
-
15
-
-
0142092546
-
The signature of selection mediated by expression on human genes
-
Urrutia AO, Hurst LD. The signature of selection mediated by expression on human genes. Genome Res 2003, 13(10):2260-2264.
-
(2003)
Genome Res
, vol.13
, Issue.10
, pp. 2260-2264
-
-
Urrutia, A.O.1
Hurst, L.D.2
-
16
-
-
0141854009
-
The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
-
Versteeg R, van Schaik BD, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ, van Kampen AH. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res 2003, 13(9):1998-2004.
-
(2003)
Genome Res
, vol.13
, Issue.9
, pp. 1998-2004
-
-
Versteeg, R.1
van Schaik, B.D.2
van Batenburg, M.F.3
Roos, M.4
Monajemi, R.5
Caron, H.6
Bussemaker, H.J.7
van Kampen, A.H.8
-
17
-
-
77954221282
-
Sequence features that drive human promoter function and tissue specificity
-
Landolin JM, Johnson DS, Trinklein ND, Aldred SF, Medina C, Shulha H, Weng Z, Myers RM. Sequence features that drive human promoter function and tissue specificity. Genome Res 2010, 20(7):890-898.
-
(2010)
Genome Res
, vol.20
, Issue.7
, pp. 890-898
-
-
Landolin, J.M.1
Johnson, D.S.2
Trinklein, N.D.3
Aldred, S.F.4
Medina, C.5
Shulha, H.6
Weng, Z.7
Myers, R.M.8
-
18
-
-
84865712383
-
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
-
Cheng C, Alexander R, Min R, Leng J, Yip KY, Rozowsky J, Yan KK, Dong X, Djebali S, Ruan Y, Davis CA, Carninci P, Lassman T, Gingeras TR, Guigo R, Birney E, Weng Z, Snyder M, Gerstein M. Understanding transcriptional regulation by integrative analysis of transcription factor binding data. Genome Res 2012, 22(9):1658-1667.
-
(2012)
Genome Res
, vol.22
, Issue.9
, pp. 1658-1667
-
-
Cheng, C.1
Alexander, R.2
Min, R.3
Leng, J.4
Yip, K.Y.5
Rozowsky, J.6
Yan, K.K.7
Dong, X.8
Djebali, S.9
Ruan, Y.10
Davis, C.A.11
Carninci, P.12
Lassman, T.13
Gingeras, T.R.14
Guigo, R.15
Birney, E.16
Weng, Z.17
Snyder, M.18
Gerstein, M.19
-
19
-
-
22144447840
-
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
-
Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Paabo S. Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 2005, 309(5742):1850-1854.
-
(2005)
Science
, vol.309
, Issue.5742
, pp. 1850-1854
-
-
Khaitovich, P.1
Hellmann, I.2
Enard, W.3
Nowick, K.4
Leinweber, M.5
Franz, H.6
Weiss, G.7
Lachmann, M.8
Paabo, S.9
-
20
-
-
33244455951
-
Evolutionary conservation of expression profiles between human and mouse orthologous genes
-
Liao BY, Zhang J. Evolutionary conservation of expression profiles between human and mouse orthologous genes. Mol Biol Evol 2006, 23(3):530-540.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.3
, pp. 530-540
-
-
Liao, B.Y.1
Zhang, J.2
-
21
-
-
33646882591
-
Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution
-
Liao BY, Zhang J. Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Mol Biol Evol 2006, 23(6):1119-1128.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.6
, pp. 1119-1128
-
-
Liao, B.Y.1
Zhang, J.2
-
22
-
-
24744438019
-
Gene expression evolves faster in narrowly than in broadly expressed mammalian genes
-
Yang J, Su AI, Li WH. Gene expression evolves faster in narrowly than in broadly expressed mammalian genes. Mol Biol Evol 2005, 22(10):2113-2118.
-
(2005)
Mol Biol Evol
, vol.22
, Issue.10
, pp. 2113-2118
-
-
Yang, J.1
Su, A.I.2
Li, W.H.3
-
23
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand D, Soumillon M, Necsulea A, Julien P, Csardi G, Harrigan P, Weier M, Liechti A, Aximu-Petri A, Kircher M, Albert FW, Zeller U, Khaitovich P, Grutzner F, Bergmann S, Nielsen R, Paabo S, Kaessmann H. The evolution of gene expression levels in mammalian organs. Nature 2011, 478(7369):343-348.
-
(2011)
Nature
, vol.478
, Issue.7369
, pp. 343-348
-
-
Brawand, D.1
Soumillon, M.2
Necsulea, A.3
Julien, P.4
Csardi, G.5
Harrigan, P.6
Weier, M.7
Liechti, A.8
Aximu-Petri, A.9
Kircher, M.10
Albert, F.W.11
Zeller, U.12
Khaitovich, P.13
Grutzner, F.14
Bergmann, S.15
Nielsen, R.16
Paabo, S.17
Kaessmann, H.18
-
24
-
-
0035986888
-
Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover
-
Dermitzakis ET, Clark AG. Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover. Mol Biol Evol 2002, 19(7):1114-1121.
-
(2002)
Mol Biol Evol
, vol.19
, Issue.7
, pp. 1114-1121
-
-
Dermitzakis, E.T.1
Clark, A.G.2
-
25
-
-
34548359013
-
Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms
-
Borneman AR, Zhang ZD, Rozowsky J, Seringhaus MR, Gerstein M, Snyder M. Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms. Funct Integr Genomics 2007, 7(4):335-345.
-
(2007)
Funct Integr Genomics
, vol.7
, Issue.4
, pp. 335-345
-
-
Borneman, A.R.1
Zhang, Z.D.2
Rozowsky, J.3
Seringhaus, M.R.4
Gerstein, M.5
Snyder, M.6
-
26
-
-
34249818182
-
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
-
Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat Genet 2007, 39(6):730-732.
-
(2007)
Nat Genet
, vol.39
, Issue.6
, pp. 730-732
-
-
Odom, D.T.1
Dowell, R.D.2
Jacobsen, E.S.3
Gordon, W.4
Danford, T.W.5
MacIsaac, K.D.6
Rolfe, P.A.7
Conboy, C.M.8
Gifford, D.K.9
Fraenkel, E.10
-
27
-
-
69449085281
-
Analysis of the platypus genome suggests a transposon origin for mammalian imprinting
-
Pask AJ, Papenfuss AT, Ager EI, McColl KA, Speed TP, Renfree MB. Analysis of the platypus genome suggests a transposon origin for mammalian imprinting. Genome Biol 2009, 10(1):R1.
-
(2009)
Genome Biol
, vol.10
, Issue.1
, pp. R1
-
-
Pask, A.J.1
Papenfuss, A.T.2
Ager, E.I.3
McColl, K.A.4
Speed, T.P.5
Renfree, M.B.6
-
28
-
-
43449123631
-
Genome analysis of the platypus reveals unique signatures of evolution
-
Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grutzner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, Lopez-Otin C, Ordonez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, et al. Genome analysis of the platypus reveals unique signatures of evolution. Nature 2008, 453(7192):175-183.
-
(2008)
Nature
, vol.453
, Issue.7192
, pp. 175-183
-
-
Warren, W.C.1
Hillier, L.W.2
Marshall Graves, J.A.3
Birney, E.4
Ponting, C.P.5
Grutzner, F.6
Belov, K.7
Miller, W.8
Clarke, L.9
Chinwalla, A.T.10
Yang, S.P.11
Heger, A.12
Locke, D.P.13
Miethke, P.14
Waters, P.D.15
Veyrunes, F.16
Fulton, L.17
Fulton, B.18
Graves, T.19
Wallis, J.20
Puente, X.S.21
Lopez-Otin, C.22
Ordonez, G.R.23
Eichler, E.E.24
Chen, L.25
Cheng, Z.26
Deakin, J.E.27
Alsop, A.28
Thompson, K.29
Kirby, P.30
more..
-
29
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 2007, 447(7141):167-177.
-
(2007)
Nature
, vol.447
, Issue.7141
, pp. 167-177
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
Amemiya, C.T.4
Chang, J.L.5
Duke, S.6
Garber, M.7
Gentles, A.J.8
Goodstadt, L.9
Heger, A.10
Jurka, J.11
Kamal, M.12
Mauceli, E.13
Searle, S.M.14
Sharpe, T.15
Baker, M.L.16
Batzer, M.A.17
Benos, P.V.18
Belov, K.19
Clamp, M.20
Cook, A.21
Cuff, J.22
Das, R.23
Davidow, L.24
Deakin, J.E.25
Fazzari, M.J.26
Glass, J.L.27
Grabherr, M.28
Greally, J.M.29
Gu, W.30
more..
-
30
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Dunham I, Kundaje A, Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein CB, Frietze S, Harrow J, Kaul R, Khatun J, Lajoie BR, Landt SG, Lee BK, Pauli F, Rosenbloom KR, Sabo P, Safi A, Sanyal A, Shoresh N, Simon JM, Song L, Trinklein ND, Altshuler RC, Birney E, Brown JB, Cheng C, Djebali S, Dong X, Dunham I, et al. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489(7414):57-74.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
Khatun, J.11
Lajoie, B.R.12
Landt, S.G.13
Lee, B.K.14
Pauli, F.15
Rosenbloom, K.R.16
Sabo, P.17
Safi, A.18
Sanyal, A.19
Shoresh, N.20
Simon, J.M.21
Song, L.22
Trinklein, N.D.23
Altshuler, R.C.24
Birney, E.25
Brown, J.B.26
Cheng, C.27
Djebali, S.28
Dong, X.29
Dunham, I.30
more..
-
31
-
-
78751570979
-
RNA sequencing: advances, challenges and opportunities
-
Ozsolak F, Milos PM. RNA sequencing: advances, challenges and opportunities. Nat Rev Genet 2011, 12(2):87-98.
-
(2011)
Nat Rev Genet
, vol.12
, Issue.2
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
32
-
-
67449141880
-
RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing
-
Wilhelm BT, Landry JR. RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing. Methods 2009, 48(3):249-257.
-
(2009)
Methods
, vol.48
, Issue.3
, pp. 249-257
-
-
Wilhelm, B.T.1
Landry, J.R.2
-
33
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Consortium EP, Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489(7414):57-74.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 57-74
-
-
Consortium, E.P.1
Bernstein, B.E.2
Birney, E.3
Dunham, I.4
Green, E.D.5
Gunter, C.6
Snyder, M.7
-
34
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton AM, Bird A. CpG islands and the regulation of transcription. Genes Dev 2011, 25(10):1010-1022.
-
(2011)
Genes Dev
, vol.25
, Issue.10
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
35
-
-
29244438472
-
CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex
-
Lee JH, Skalnik DG. CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex. J Biol Chem 2005, 280(50):41725-41731.
-
(2005)
J Biol Chem
, vol.280
, Issue.50
, pp. 41725-41731
-
-
Lee, J.H.1
Skalnik, D.G.2
-
36
-
-
67649669255
-
A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling
-
Ramirez-Carrozzi VR, Braas D, Bhatt DM, Cheng CS, Hong C, Doty KR, Black JC, Hoffmann A, Carey M, Smale ST. A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 2009, 138(1):114-128.
-
(2009)
Cell
, vol.138
, Issue.1
, pp. 114-128
-
-
Ramirez-Carrozzi, V.R.1
Braas, D.2
Bhatt, D.M.3
Cheng, C.S.4
Hong, C.5
Doty, K.R.6
Black, J.C.7
Hoffmann, A.8
Carey, M.9
Smale, S.T.10
-
37
-
-
51649129596
-
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
-
Mohn F, Weber M, Rebhan M, Roloff TC, Richter J, Stadler MB, Bibel M, Schubeler D. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol Cell 2008, 30(6):755-766.
-
(2008)
Mol Cell
, vol.30
, Issue.6
, pp. 755-766
-
-
Mohn, F.1
Weber, M.2
Rebhan, M.3
Roloff, T.C.4
Richter, J.5
Stadler, M.B.6
Bibel, M.7
Schubeler, D.8
-
38
-
-
55449105221
-
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
-
Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet 2008, 4(10):e1000242.
-
(2008)
PLoS Genet
, vol.4
, Issue.10
, pp. e1000242
-
-
Ku, M.1
Koche, R.P.2
Rheinbay, E.3
Mendenhall, E.M.4
Endoh, M.5
Mikkelsen, T.S.6
Presser, A.7
Nusbaum, C.8
Xie, X.9
Chi, A.S.10
Adli, M.11
Kasif, S.12
Ptaszek, L.M.13
Cowan, C.A.14
Lander, E.S.15
Koseki, H.16
Bernstein, B.E.17
-
39
-
-
84863986133
-
Functions of DNA methylation: islands, start sites, gene bodies and beyond
-
Jones PA. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet 2012, 13(7):484-492.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.7
, pp. 484-492
-
-
Jones, P.A.1
-
40
-
-
84859731272
-
Features of methylation and gene expression in the promoter-associated CpG islands using human methylome data
-
Du X, Han L, Guo AY, Zhao Z. Features of methylation and gene expression in the promoter-associated CpG islands using human methylome data. Comp Funct Genomics 2012, 2012:598987.
-
(2012)
Comp Funct Genomics
, vol.2012
, pp. 598987
-
-
Du, X.1
Han, L.2
Guo, A.Y.3
Zhao, Z.4
-
41
-
-
84879055641
-
Passive and active DNA methylation and the interplay with genetic variation in gene regulation
-
Gutierrez-Arcelus M, Lappalainen T, Montgomery SB, Buil A, Ongen H, Yurovsky A, Bryois J, Giger T, Romano L, Planchon A, Falconnet E, Bielser D, Gagnebin M, Padioleau I, Borel C, Letourneau A, Makrythanasis P, Guipponi M, Gehrig C, Antonarakis SE, Dermitzakis ET. Passive and active DNA methylation and the interplay with genetic variation in gene regulation. eLife 2013, 2:e00523.
-
(2013)
eLife
, vol.2
, pp. e00523
-
-
Gutierrez-Arcelus, M.1
Lappalainen, T.2
Montgomery, S.B.3
Buil, A.4
Ongen, H.5
Yurovsky, A.6
Bryois, J.7
Giger, T.8
Romano, L.9
Planchon, A.10
Falconnet, E.11
Bielser, D.12
Gagnebin, M.13
Padioleau, I.14
Borel, C.15
Letourneau, A.16
Makrythanasis, P.17
Guipponi, M.18
Gehrig, C.19
Antonarakis, S.E.20
Dermitzakis, E.T.21
more..
-
42
-
-
84899145981
-
Effect of estrogen receptor alpha binding on functional DNA methylation in breast cancer
-
Ung M, Ma X, Johnson KC, Christensen BC, Cheng C. Effect of estrogen receptor alpha binding on functional DNA methylation in breast cancer. Epigenetics 2014, 9(4):523-532.
-
(2014)
Epigenetics
, vol.9
, Issue.4
, pp. 523-532
-
-
Ung, M.1
Ma, X.2
Johnson, K.C.3
Christensen, B.C.4
Cheng, C.5
-
43
-
-
84899068616
-
Effects of cytosine methylation on transcription factor binding sites
-
Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB, Consortium F. Effects of cytosine methylation on transcription factor binding sites. BMC Genomics 2014, 15(1):119.
-
(2014)
BMC Genomics
, vol.15
, Issue.1
, pp. 119
-
-
Medvedeva, Y.A.1
Khamis, A.M.2
Kulakovskiy, I.V.3
Ba-Alawi, W.4
Bhuyan, M.S.5
Kawaji, H.6
Lassmann, T.7
Harbers, M.8
Forrest, A.R.9
Bajic, V.B.10
Consortium, F.11
-
44
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, et al. The accessible chromatin landscape of the human genome. Nature 2012, 489(7414):75-82.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
Garg, K.11
John, S.12
Sandstrom, R.13
Bates, D.14
Boatman, L.15
Canfield, T.K.16
Diegel, M.17
Dunn, D.18
Ebersol, A.K.19
Frum, T.20
Giste, E.21
Johnson, A.K.22
Johnson, E.M.23
Kutyavin, T.24
Lajoie, B.25
Lee, B.K.26
Lee, K.27
London, D.28
Lotakis, D.29
Neph, S.30
more..
-
45
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A 2004, 101(16):6062-6067.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.16
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.P.11
Walker, J.R.12
Hogenesch, J.B.13
-
46
-
-
84858221706
-
Ensembl 2012
-
Flicek P, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S, Gil L, Gordon L, Hendrix M, Hourlier T, Johnson N, Kahari AK, Keefe D, Keenan S, Kinsella R, Komorowska M, Koscielny G, Kulesha E, Larsson P, Longden I, McLaren W, Muffato M, Overduin B, Pignatelli M, Pritchard B, Riat HS, et al. Ensembl 2012. Nucleic Acids Res 2012, 40(Database issue):D84-D90.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D84-D90
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
Gil, L.11
Gordon, L.12
Hendrix, M.13
Hourlier, T.14
Johnson, N.15
Kahari, A.K.16
Keefe, D.17
Keenan, S.18
Kinsella, R.19
Komorowska, M.20
Koscielny, G.21
Kulesha, E.22
Larsson, P.23
Longden, I.24
McLaren, W.25
Muffato, M.26
Overduin, B.27
Pignatelli, M.28
Pritchard, B.29
Riat, H.S.30
more..
-
47
-
-
77649299348
-
An atlas of combinatorial transcriptional regulation in mouse and man
-
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T, van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A, Teasdale RD, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell 2010, 140(5):744-752.
-
(2010)
Cell
, vol.140
, Issue.5
, pp. 744-752
-
-
Ravasi, T.1
Suzuki, H.2
Cannistraci, C.V.3
Katayama, S.4
Bajic, V.B.5
Tan, K.6
Akalin, A.7
Schmeier, S.8
Kanamori-Katayama, M.9
Bertin, N.10
Carninci, P.11
Daub, C.O.12
Forrest, A.R.13
Gough, J.14
Grimmond, S.15
Han, J.H.16
Hashimoto, T.17
Hide, W.18
Hofmann, O.19
Kamburov, A.20
Kaur, M.21
Kawaji, H.22
Kubosaki, A.23
Lassmann, T.24
van Nimwegen, E.25
MacPherson, C.R.26
Ogawa, C.27
Radovanovic, A.28
Schwartz, A.29
Teasdale, R.D.30
more..
|