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Volumn 111, Issue 34, 2014, Pages

Structural basis for the recruitment and activation of the Legionella phospholipase VipD by the host GTPase Rab5

Author keywords

Allosteric modulation; Membrane composition; Pathogenic bacteria; X ray crystallography

Indexed keywords

AMINO ACID; INHIBITOR PROTEIN; MUTANT PROTEIN; PHOSPHOLIPASE; RAB PROTEIN; UNCLASSIFIED DRUG; VACUOLAR PROTEIN SORTING INHIBITOR PROTEIN D; BACTERIAL PROTEIN; MULTIPROTEIN COMPLEX; PHOSPHOLIPASE A1; RECOMBINANT PROTEIN; VESICULAR TRANSPORT PROTEIN;

EID: 84906699384     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1405391111     Document Type: Article
Times cited : (41)

References (52)
  • 1
    • 84902251736 scopus 로고    scopus 로고
    • Mechanism and structure of the bacterial type IV secretion systems
    • Christie PJ, Whitaker N, González-Rivera C (2014) Mechanism and structure of the bacterial type IV secretion systems. Biochim Biophys Acta 1843(8):1578-1591.
    • (2014) Biochim Biophys Acta , vol.1843 , Issue.8 , pp. 1578-1591
    • Christie, P.J.1    Whitaker, N.2    González-Rivera, C.3
  • 2
    • 58149375801 scopus 로고    scopus 로고
    • Structure of a type IV secretion system core complex
    • Fronzes R, et al. (2009) Structure of a type IV secretion system core complex. Science 323(5911):266-268.
    • (2009) Science , vol.323 , Issue.5911 , pp. 266-268
    • Fronzes, R.1
  • 3
    • 84856946327 scopus 로고    scopus 로고
    • Bacterial Type IV secretion systems: Versatile virulence machines
    • Voth DE, Broederdorf LJ, Graham JG (2012) Bacterial Type IV secretion systems: Versatile virulence machines. Future Microbiol 7(2):241-257.
    • (2012) Future Microbiol , vol.7 , Issue.2 , pp. 241-257
    • Voth, D.E.1    Broederdorf, L.J.2    Graham, J.G.3
  • 4
    • 78650153662 scopus 로고    scopus 로고
    • Pathogen-mediated posttranslational modifications: A re-emerging field
    • Ribet D, Cossart P (2010) Pathogen-mediated posttranslational modifications: A re-emerging field. Cell 143(5):694-702.
    • (2010) Cell , vol.143 , Issue.5 , pp. 694-702
    • Ribet, D.1    Cossart, P.2
  • 5
    • 67649400561 scopus 로고    scopus 로고
    • Common themes in the design and function of bacterial effectors
    • Galán JE (2009) Common themes in the design and function of bacterial effectors. Cell Host Microbe 5(6):571-579.
    • (2009) Cell Host Microbe , vol.5 , Issue.6 , pp. 571-579
    • Galán, J.E.1
  • 6
    • 73949144553 scopus 로고    scopus 로고
    • Activation of a bacterial virulence protein by the GTPase RhoA
    • Christen M, et al. (2009) Activation of a bacterial virulence protein by the GTPase RhoA. Sci Signal 2(95):ra71.
    • (2009) Sci Signal , vol.2 , Issue.95
    • Christen, M.1
  • 7
    • 84865489460 scopus 로고    scopus 로고
    • A Salmonella typhimurium-translocated glycerophospholipid:Cholesterol acyltransferase promotes virulence by binding to the RhoA protein switch regions
    • LaRock DL, Brzovic PS, Levin I, Blanc MP, Miller SI (2012) A Salmonella typhimurium-translocated glycerophospholipid:cholesterol acyltransferase promotes virulence by binding to the RhoA protein switch regions. J Biol Chem 287(35):29654-29663.
    • (2012) J Biol Chem , vol.287 , Issue.35 , pp. 29654-29663
    • LaRock, D.L.1    Brzovic, P.S.2    Levin, I.3    Blanc, M.P.4    Miller, S.I.5
  • 8
    • 55249084667 scopus 로고    scopus 로고
    • Structure and function of Salmonella SifA indicate that its interactions with SKIP, SseJ, and RhoA family GTPases induce endosomal tubulation
    • Ohlson MB, et al. (2008) Structure and function of Salmonella SifA indicate that its interactions with SKIP, SseJ, and RhoA family GTPases induce endosomal tubulation. Cell Host Microbe 4(5):434-446.
    • (2008) Cell Host Microbe , vol.4 , Issue.5 , pp. 434-446
    • Ohlson, M.B.1
  • 9
    • 83355166268 scopus 로고    scopus 로고
    • Ubiquitin and ubiquitin-modified proteins activate the Pseudomonas aeruginosa T3SS cytotoxin, ExoU
    • Anderson DM, et al. (2011) Ubiquitin and ubiquitin-modified proteins activate the Pseudomonas aeruginosa T3SS cytotoxin, ExoU. Mol Microbiol 82(6):1454-1467.
    • (2011) Mol Microbiol , vol.82 , Issue.6 , pp. 1454-1467
    • Anderson, D.M.1
  • 12
    • 33646949950 scopus 로고    scopus 로고
    • Members of a Legionella pneumophila family of proteins with ExoU (Phospholipase A) active sites are translocated to target cells
    • DOI 10.1128/IAI.02060-05
    • VanRheenen SM, Luo ZQ, O'Connor T, Isberg RR (2006) Members of a Legionella pneumophila family of proteins with ExoU (phospholipase A) active sites are translocated to target cells. Infect Immun 74(6):3597-3606. (Pubitemid 43794551)
    • (2006) Infection and Immunity , vol.74 , Issue.6 , pp. 3597-3606
    • Vanrheenen, S.M.1    Luo, Z.-Q.2    O'Connor, T.3    Isberg, R.R.4
  • 13
    • 84872026290 scopus 로고    scopus 로고
    • VipD of Legionella pneumophila targets activated Rab5 and Rab22 to interfere with endosomal trafficking in macrophages
    • Ku B, et al. (2012) VipD of Legionella pneumophila targets activated Rab5 and Rab22 to interfere with endosomal trafficking in macrophages. PLoS Pathog 8(12):e1003082.
    • (2012) PLoS Pathog , vol.8 , Issue.12
    • Ku, B.1
  • 14
    • 84897011367 scopus 로고    scopus 로고
    • VipD is a Rab5-activated phospholipase A1 that protects Legionella pneumophila from endosomal fusion
    • Gaspar AH, Machner MP (2014) VipD is a Rab5-activated phospholipase A1 that protects Legionella pneumophila from endosomal fusion. Proc Natl Acad Sci USA 111(12):4560-4565.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.12 , pp. 4560-4565
    • Gaspar, A.H.1    Machner, M.P.2
  • 15
    • 59849094765 scopus 로고    scopus 로고
    • Legionella pneumophila Dot/Icm translocated substrates: A sum of parts
    • Ensminger AW, Isberg RR (2009) Legionella pneumophila Dot/Icm translocated substrates: A sum of parts. Curr Opin Microbiol 12(1):67-73.
    • (2009) Curr Opin Microbiol , vol.12 , Issue.1 , pp. 67-73
    • Ensminger, A.W.1    Isberg, R.R.2
  • 16
    • 0021014278 scopus 로고
    • The Legionnaires' disease bacterium (Legionella pneumophila) inhibits phagosome-lysosome fusion in human monocytes
    • Horwitz MA (1983) The Legionnaires' disease bacterium (Legionella pneumophila) inhibits phagosome-lysosome fusion in human monocytes. J Exp Med 158(6):2108-2126. (Pubitemid 14210808)
    • (1983) Journal of Experimental Medicine , vol.158 , Issue.6 , pp. 2108-2126
    • Horwitz, M.A.1
  • 17
    • 0037106460 scopus 로고    scopus 로고
    • Phagosome maturation: Aging gracefully
    • Vieira OV, Botelho RJ, Grinstein S (2002) Phagosome maturation: Aging gracefully. Biochem J 366(Pt 3):689-704.
    • (2002) Biochem J , vol.366 , Issue.PART 3 , pp. 689-704
    • Vieira, O.V.1    Botelho, R.J.2    Grinstein, S.3
  • 18
    • 0035958009 scopus 로고    scopus 로고
    • Structural plasticity of an invariant hydrophobic triad in the switch regions of Rab GTPases is a determinant of effector recognition
    • Merithew E, et al. (2001) Structural plasticity of an invariant hydrophobic triad in the switch regions of Rab GTPases is a determinant of effector recognition. J Biol Chem 276(17):13982-13988.
    • (2001) J Biol Chem , vol.276 , Issue.17 , pp. 13982-13988
    • Merithew, E.1
  • 20
    • 84885425361 scopus 로고    scopus 로고
    • Induction of caspase 3 activation by multiple Legionella pneumophila Dot/Icm substrates
    • Zhu W, Hammad LA, Hsu F, Mao Y, Luo ZQ (2013) Induction of caspase 3 activation by multiple Legionella pneumophila Dot/Icm substrates. Cell Microbiol 15(11):1783-1795.
    • (2013) Cell Microbiol , vol.15 , Issue.11 , pp. 1783-1795
    • Zhu, W.1    Hammad, L.A.2    Hsu, F.3    Mao, Y.4    Luo, Z.Q.5
  • 21
    • 22944444569 scopus 로고    scopus 로고
    • Structural basis of family-wide Rab GTPase recognition by rabenosyn-5
    • DOI 10.1038/nature03798
    • Eathiraj S, Pan X, Ritacco C, Lambright DG (2005) Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature 436(7049):415-419. (Pubitemid 41059053)
    • (2005) Nature , vol.436 , Issue.7049 , pp. 415-419
    • Eathiraj, S.1    Pan, X.2    Ritacco, C.3    Lambright, D.G.4
  • 22
    • 77954649564 scopus 로고    scopus 로고
    • Structural basis for Rab GTPase recognition and endosome tethering by the C2H2 zinc finger of Early Endosomal Autoantigen 1 (EEA1)
    • Mishra A, Eathiraj S, Corvera S, Lambright DG (2010) Structural basis for Rab GTPase recognition and endosome tethering by the C2H2 zinc finger of Early Endosomal Autoantigen 1 (EEA1). Proc Natl Acad Sci USA 107(24):10866-10871.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.24 , pp. 10866-10871
    • Mishra, A.1    Eathiraj, S.2    Corvera, S.3    Lambright, D.G.4
  • 23
    • 84891782659 scopus 로고    scopus 로고
    • Pfam: The protein families database
    • Finn RD, et al. (2014) Pfam: The protein families database. Nucleic Acids Res 42(Database issue):D222-D230.
    • (2014) Nucleic Acids Res , vol.42 , Issue.DATABASE ISSUE
    • Finn, R.D.1
  • 24
    • 80054082654 scopus 로고    scopus 로고
    • Phospholipase A2 enzymes: Physical structure, biological function, disease implication, chemical inhibition, and therapeutic intervention
    • Dennis EA, Cao J, Hsu YH, Magrioti V, Kokotos G (2011) Phospholipase A2 enzymes: Physical structure, biological function, disease implication, chemical inhibition, and therapeutic intervention. Chem Rev 111(10):6130-6185.
    • (2011) Chem Rev , vol.111 , Issue.10 , pp. 6130-6185
    • Dennis, E.A.1    Cao, J.2    Hsu, Y.H.3    Magrioti, V.4    Kokotos, G.5
  • 25
    • 0033617291 scopus 로고    scopus 로고
    • 2 reveals a novel topology and catalytic mechanism
    • DOI 10.1016/S0092-8674(00)80744-8
    • Dessen A, et al. (1999) Crystal structure of human cytosolic phospholipase A2 reveals a novel topology and catalytic mechanism. Cell 97(3):349-360. (Pubitemid 29214591)
    • (1999) Cell , vol.97 , Issue.3 , pp. 349-360
    • Dessen, A.1    Tang, J.2    Schmidt, H.3    Stahl, M.4    Clark, J.D.5    Seehra, J.6    Somers, W.S.7
  • 26
    • 27744546297 scopus 로고    scopus 로고
    • Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer
    • de Felipe KS, et al. (2005) Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer. J Bacteriol 187(22):7716-7726.
    • (2005) J Bacteriol , vol.187 , Issue.22 , pp. 7716-7726
    • De Felipe, K.S.1
  • 27
    • 84861684703 scopus 로고    scopus 로고
    • Exploitation of evolutionarily conserved amoeba and mammalian processes by Legionella
    • Al-Quadan T, Price CT, Abu Kwaik Y (2012) Exploitation of evolutionarily conserved amoeba and mammalian processes by Legionella. Trends Microbiol 20(6):299-306.
    • (2012) Trends Microbiol , vol.20 , Issue.6 , pp. 299-306
    • Al-Quadan, T.1    Price, C.T.2    Abu Kwaik, Y.3
  • 29
    • 0027200087 scopus 로고
    • Interfacial activation of the lipase-procolipase complex by mixed micelles revealed by X-ray crystallography
    • van Tilbeurgh H, et al. (1993) Interfacial activation of the lipase-procolipase complex by mixed micelles revealed by X-ray crystallography. Nature 362(6423):814-820.
    • (1993) Nature , vol.362 , Issue.6423 , pp. 814-820
    • Van Tilbeurgh, H.1
  • 32
    • 7044269246 scopus 로고    scopus 로고
    • 2 determines productive-mode orientation of the enzyme at the membrane surface
    • DOI 10.1016/j.jmb.2004.09.034, PII S0022283604011775
    • Qin S, Pande AH, Nemec KN, Tatulian SA (2004) The N-terminal alpha-helix of pancreatic phospholipase A2 determines productive-mode orientation of the enzyme at the membrane surface. J Mol Biol 344(1):71-89. (Pubitemid 39422375)
    • (2004) Journal of Molecular Biology , vol.344 , Issue.1 , pp. 71-89
    • Qin, S.1    Pande, A.H.2    Nemec, K.N.3    Tatulian, S.A.4
  • 33
    • 27744595554 scopus 로고    scopus 로고
    • 2 from studies on native and chimeric proteins
    • DOI 10.1074/jbc.M506789200
    • Qin S, Pande AH, Nemec KN, He X, Tatulian SA (2005) Evidence for the regulatory role of the N-terminal helix of secretory phospholipase A(2) from studies on native and chimeric proteins. J Biol Chem 280(44):36773-36783. (Pubitemid 41587757)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.44 , pp. 36773-36783
    • Qin, S.1    Pande, A.H.2    Nemec, K.N.3    He, X.4    Tatulian, S.A.5
  • 34
    • 84861206143 scopus 로고    scopus 로고
    • Structural basis of cytotoxicity mediated by the type III secretion toxin ExoU from Pseudomonas aeruginosa
    • Gendrin C, et al. (2012) Structural basis of cytotoxicity mediated by the type III secretion toxin ExoU from Pseudomonas aeruginosa. PLoS Pathog 8(4):e1002637.
    • (2012) PLoS Pathog , vol.8 , Issue.4
    • Gendrin, C.1
  • 35
    • 0034977803 scopus 로고    scopus 로고
    • Multiple domains are required for the toxic activity of Pseudomonas aeruginosa ExoU
    • DOI 10.1128/JB.183.14.4330-4344.2001
    • Finck-Barbançon V, Frank DW (2001) Multiple domains are required for the toxic activity of Pseudomonas aeruginosa ExoU. J Bacteriol 183(14):4330-4344. (Pubitemid 32568086)
    • (2001) Journal of Bacteriology , vol.183 , Issue.14 , pp. 4330-4344
    • Finck-Barbancon, V.1    Frank, D.W.2
  • 36
    • 0033082686 scopus 로고    scopus 로고
    • Overcoming expression and purification problems of RhoGDI using a family of 'parallel' expression vectors
    • DOI 10.1006/prep.1998.1003
    • Sheffield P, Garrard S, Derewenda Z (1999) Overcoming expression and purification problems of RhoGDI using a family of "parallel" expression vectors. Protein Expr Purif 15(1):34-39. (Pubitemid 29321466)
    • (1999) Protein Expression and Purification , vol.15 , Issue.1 , pp. 34-39
    • Sheffield, P.1    Garrard, S.2    Derewenda, Z.3
  • 37
    • 76449106188 scopus 로고    scopus 로고
    • Integration, scaling, space-group assignment and post-refinement
    • Kabsch W (2010) Integration, scaling, space-group assignment and post-refinement. Acta Crystallogr D Biol Crystallogr 66(Pt 2):133-144.
    • (2010) Acta Crystallogr D Biol Crystallogr , vol.66 , Issue.PART 2 , pp. 133-144
    • Kabsch, W.1
  • 39
    • 76449098262 scopus 로고    scopus 로고
    • PHENIX: A comprehensive Python-based system for macromolecular structure solution
    • Adams PD, et al. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2):213-221.
    • (2010) Acta Crystallogr D Biol Crystallogr , vol.66 , Issue.PART 2 , pp. 213-221
    • Adams, P.D.1
  • 42
  • 43
    • 0026910457 scopus 로고
    • Determination of the regularization parameter in indirect-transform methods using perceptual criteria
    • Svergun D (1992) Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J Appl Cryst 25(4):495-503.
    • (1992) J Appl Cryst , vol.25 , Issue.4 , pp. 495-503
    • Svergun, D.1
  • 44
    • 0029185933 scopus 로고
    • CRYSOL - A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
    • DOI 10.1107/S0021889895007047
    • Svergun D, Barberato C, Koch MHJ (1995) CRYSOL: A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J Appl Cryst 28(6):768-773. (Pubitemid 3014671)
    • (1995) Journal of Applied Crystallography , vol.28 , Issue.6 , pp. 768-773
    • Svergun, D.1    Barberato, C.2    Koch, M.H.3
  • 45
    • 0035010533 scopus 로고    scopus 로고
    • Determination of domain structure of proteins from x-ray solution scattering
    • Svergun DI, Petoukhov MV, Koch MH (2001) Determination of domain structure of proteins from X-ray solution scattering. Biophys J 80(6):2946-2953. (Pubitemid 32521666)
    • (2001) Biophysical Journal , vol.80 , Issue.6 , pp. 2946-2953
    • Svergun, D.I.1    Petoukhov, M.V.2    Koch, M.H.J.3
  • 46
    • 0037701585 scopus 로고    scopus 로고
    • Uniqueness of ab initio shape determination in small-angle scattering
    • Volkov VV, Svergun DI (2003) Uniqueness of ab initio shape determination in small-angle scattering. J Appl Cryst 36(3 Part 1):860-864.
    • (2003) J Appl Cryst , vol.36 , Issue.3 PART 1 , pp. 860-864
    • Volkov, V.V.1    Svergun, D.I.2
  • 47
    • 0035124442 scopus 로고    scopus 로고
    • Automated matching of high- and low-resolution structural models
    • DOI 10.1107/S0021889800014126
    • Kozin MB, Svergun DI (2001) Automated matching of high- and low-resolution structural models. J Appl Cryst 34(1):33-41. (Pubitemid 32151714)
    • (2001) Journal of Applied Crystallography , vol.34 , Issue.1 , pp. 33-41
    • Kozin, M.B.1    Svergun, D.I.2
  • 48
    • 84864473993 scopus 로고    scopus 로고
    • H++ 3.0: Automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations
    • Anandakrishnan R, Aguilar B, Onufriev AV (2012) H++ 3.0: Automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations. Nucleic Acids Res 40(Web Server issue):W537-541.
    • (2012) Nucleic Acids Res , vol.40 , Issue.WEB SERVER ISSUE
    • Anandakrishnan, R.1    Aguilar, B.2    Onufriev, A.V.3
  • 49
    • 33646794930 scopus 로고    scopus 로고
    • A simple clustering algorithm can be accurate enough for use in calculations of pKs in macromolecules
    • DOI 10.1002/prot.20922
    • Myers J, Grothaus G, Narayanan S, Onufriev A (2006) A simple clustering algorithm can be accurate enough for use in calculations of pKs in macromolecules. Proteins 63(4):928-938. (Pubitemid 43765144)
    • (2006) Proteins: Structure, Function and Genetics , vol.63 , Issue.4 , pp. 928-938
    • Myers, J.1    Grothaus, G.2    Narayanan, S.3    Onufriev, A.4
  • 50
    • 23144457576 scopus 로고    scopus 로고
    • H++: A server for estimating pKas and adding missing hydrogens to macromolecules
    • Gordon JC, et al. (2005) H++: A server for estimating pKas and adding missing hydrogens to macromolecules. Nucleic Acids Res 33(Web Server issue):W368-W371.
    • (2005) Nucleic Acids Res , vol.33 , Issue.WEB SERVER ISSUE
    • Gordon, J.C.1
  • 51
    • 84862614975 scopus 로고    scopus 로고
    • University of California, San Francisco
    • Case DA, et al. (2012) AMBER 12 (University of California, San Francisco).
    • (2012) AMBER 12
    • Case, D.A.1
  • 52
    • 78149459697 scopus 로고    scopus 로고
    • MoDEL (Molecular Dynamics Extended Library): A database of atomistic molecular dynamics trajectories
    • Meyer T, et al. (2010) MoDEL (Molecular Dynamics Extended Library): A database of atomistic molecular dynamics trajectories. Structure 18(11):1399-1409.
    • (2010) Structure , vol.18 , Issue.11 , pp. 1399-1409
    • Meyer, T.1


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