-
1
-
-
79751521478
-
Biomedical differences between human and nonhuman hominids: potential roles for uniquely human aspects of sialic acid biology
-
Varki N.M., Strobert E., Dick E.J., Benirschke K., Varki A. Biomedical differences between human and nonhuman hominids: potential roles for uniquely human aspects of sialic acid biology. Annu Rev Pathol 2011, 6:365-393.
-
(2011)
Annu Rev Pathol
, vol.6
, pp. 365-393
-
-
Varki, N.M.1
Strobert, E.2
Dick, E.J.3
Benirschke, K.4
Varki, A.5
-
2
-
-
52149084405
-
Explaining human uniqueness: genome interactions with environment, behaviour and culture
-
Varki A., Geschwind D.H., Eichler E.E. Explaining human uniqueness: genome interactions with environment, behaviour and culture. Nat Rev Genet 2008, 9:749-763.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 749-763
-
-
Varki, A.1
Geschwind, D.H.2
Eichler, E.E.3
-
3
-
-
84867667220
-
What makes us human? Answers from evolutionary anthropology
-
Calcagno J.M., Fuentes A. What makes us human? Answers from evolutionary anthropology. Evolut Anthropol 2012, 21:182-194.
-
(2012)
Evolut Anthropol
, vol.21
, pp. 182-194
-
-
Calcagno, J.M.1
Fuentes, A.2
-
4
-
-
80054973803
-
A high-resolution map of human evolutionary constraint using 29 mammals
-
Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature 2011, 478:476-482.
-
(2011)
Nature
, vol.478
, pp. 476-482
-
-
Lindblad-Toh, K.1
Garber, M.2
Zuk, O.3
Lin, M.F.4
Parker, B.J.5
Washietl, S.6
Kheradpour, P.7
Ernst, J.8
Jordan, G.9
Mauceli, E.10
-
5
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 2005, 437:69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
6
-
-
28844466854
-
Comparing the human and chimpanzee genomes: searching for needles in a haystack
-
Varki A., Altheide T.K. Comparing the human and chimpanzee genomes: searching for needles in a haystack. Genome Res 2005, 15:1746-1758.
-
(2005)
Genome Res
, vol.15
, pp. 1746-1758
-
-
Varki, A.1
Altheide, T.K.2
-
7
-
-
51149097366
-
Human-specific gain of function in a developmental enhancer
-
Prabhakar S., Visel A., Akiyama J.A., Shoukry M., Lewis K.D., Holt A., Plajzer-Frick I., Morrison H., Fitzpatrick D.R., Afzal V., et al. Human-specific gain of function in a developmental enhancer. Science 2008, 321:1346-1350.
-
(2008)
Science
, vol.321
, pp. 1346-1350
-
-
Prabhakar, S.1
Visel, A.2
Akiyama, J.A.3
Shoukry, M.4
Lewis, K.D.5
Holt, A.6
Plajzer-Frick, I.7
Morrison, H.8
Fitzpatrick, D.R.9
Afzal, V.10
-
8
-
-
84873506311
-
Function and regulation of AUTS2, a gene implicated in autism and human evolution
-
Oksenberg N., Stevison L., Wall J.D., Ahituv N. Function and regulation of AUTS2, a gene implicated in autism and human evolution. PLoS Genet 2013, 9:e1003221.
-
(2013)
PLoS Genet
, vol.9
-
-
Oksenberg, N.1
Stevison, L.2
Wall, J.D.3
Ahituv, N.4
-
9
-
-
84887496761
-
Many human accelerated regions are developmental enhancers
-
Capra J.A., Erwin G.D., McKinsey G., Rubenstein J.L., Pollard K.S. Many human accelerated regions are developmental enhancers. Philos Trans R Soc Lond B Biol Sci 2013, 368:20130025.
-
(2013)
Philos Trans R Soc Lond B Biol Sci
, vol.368
, pp. 20130025
-
-
Capra, J.A.1
Erwin, G.D.2
McKinsey, G.3
Rubenstein, J.L.4
Pollard, K.S.5
-
10
-
-
53549094945
-
Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
-
Holloway A.K., Begun D.J., Siepel A., Pollard K.S. Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster. Genome Res 2008, 18:1592-1601.
-
(2008)
Genome Res
, vol.18
, pp. 1592-1601
-
-
Holloway, A.K.1
Begun, D.J.2
Siepel, A.3
Pollard, K.S.4
-
11
-
-
84892365780
-
The complete genome sequence of a Neanderthal from the Altai Mountains
-
Prufer K., Racimo F., Patterson N., Jay F., Sankararaman S., Sawyer S., Heinze A., Renaud G., Sudmant P.H., de Filippo C., et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 2014, 505:43-49.
-
(2014)
Nature
, vol.505
, pp. 43-49
-
-
Prufer, K.1
Racimo, F.2
Patterson, N.3
Jay, F.4
Sankararaman, S.5
Sawyer, S.6
Heinze, A.7
Renaud, G.8
Sudmant, P.H.9
de Filippo, C.10
-
12
-
-
84867331947
-
A high-coverage genome sequence from an archaic Denisovan individual
-
Meyer M., Kircher M., Gansauge M.T., Li H., Racimo F., Mallick S., Schraiber J.G., Jay F., Prufer K., de Filippo C., et al. A high-coverage genome sequence from an archaic Denisovan individual. Science 2012, 338:222-226.
-
(2012)
Science
, vol.338
, pp. 222-226
-
-
Meyer, M.1
Kircher, M.2
Gansauge, M.T.3
Li, H.4
Racimo, F.5
Mallick, S.6
Schraiber, J.G.7
Jay, F.8
Prufer, K.9
de Filippo, C.10
-
13
-
-
84875614116
-
A recent evolutionary change affects a regulatory element in the human FOXP2 gene
-
Maricic T., Gunther V., Georgiev O., Gehre S., Curlin M., Schreiweis C., Naumann R., Burbano H.A., Meyer M., Lalueza-Fox C., et al. A recent evolutionary change affects a regulatory element in the human FOXP2 gene. Mol Biol Evolut 2013, 30:844-852.
-
(2013)
Mol Biol Evolut
, vol.30
, pp. 844-852
-
-
Maricic, T.1
Gunther, V.2
Georgiev, O.3
Gehre, S.4
Curlin, M.5
Schreiweis, C.6
Naumann, R.7
Burbano, H.A.8
Meyer, M.9
Lalueza-Fox, C.10
-
14
-
-
65149103048
-
Constructing genomic maps of positive selection in humans: where do we go from here?
-
Akey J.M. Constructing genomic maps of positive selection in humans: where do we go from here?. Genome Res 2009, 19:711-722.
-
(2009)
Genome Res
, vol.19
, pp. 711-722
-
-
Akey, J.M.1
-
15
-
-
20444430245
-
A scan for positively selected genes in the genomes of humans and chimpanzees
-
Nielsen R., Bustamante C., Clark A.G., Glanowski S., Sackton T.B., Hubisz M.J., Fledel-Alon A., Tanenbaum D.M., Civello D., White T.J., et al. A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol 2005, 3:e170.
-
(2005)
PLoS Biol
, vol.3
-
-
Nielsen, R.1
Bustamante, C.2
Clark, A.G.3
Glanowski, S.4
Sackton, T.B.5
Hubisz, M.J.6
Fledel-Alon, A.7
Tanenbaum, D.M.8
Civello, D.9
White, T.J.10
-
16
-
-
50849122974
-
Patterns of positive selection in six Mammalian genomes
-
Kosiol C., Vinar T., da Fonseca R.R., Hubisz M.J., Bustamante C.D., Nielsen R., Siepel A. Patterns of positive selection in six Mammalian genomes. PLoS Genet 2008, 4:e1000144.
-
(2008)
PLoS Genet
, vol.4
-
-
Kosiol, C.1
Vinar, T.2
da Fonseca, R.R.3
Hubisz, M.J.4
Bustamante, C.D.5
Nielsen, R.6
Siepel, A.7
-
17
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A., Bejerano G., Pedersen J.S., Hinrichs A.S., Hou M., Rosenbloom K., Clawson H., Spieth J., Hillier L.W., Richards S., et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 2005, 15:1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
18
-
-
79551634894
-
PHAST and RPHAST: phylogenetic analysis with space/time models
-
Hubisz M.J., Pollard K.S., Siepel A. PHAST and RPHAST: phylogenetic analysis with space/time models. Brief Bioinform 2011, 12:41-51.
-
(2011)
Brief Bioinform
, vol.12
, pp. 41-51
-
-
Hubisz, M.J.1
Pollard, K.S.2
Siepel, A.3
-
19
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humans
-
Pollard K.S., Salama S.R., Lambert N., Lambot M.A., Coppens S., Pedersen J.S., Katzman S., King B., Onodera C., Siepel A., et al. An RNA gene expressed during cortical development evolved rapidly in humans. Nature 2006, 443:167-172.
-
(2006)
Nature
, vol.443
, pp. 167-172
-
-
Pollard, K.S.1
Salama, S.R.2
Lambert, N.3
Lambot, M.A.4
Coppens, S.5
Pedersen, J.S.6
Katzman, S.7
King, B.8
Onodera, C.9
Siepel, A.10
-
20
-
-
33750428182
-
Forces shaping the fastest evolving regions in the human genome
-
Pollard K.S., Salama S.R., King B., Kern A.D., Dreszer T., Katzman S., Siepel A., Pedersen J.S., Bejerano G., Baertsch R., et al. Forces shaping the fastest evolving regions in the human genome. PLoS Genet 2006, 2:e168.
-
(2006)
PLoS Genet
, vol.2
-
-
Pollard, K.S.1
Salama, S.R.2
King, B.3
Kern, A.D.4
Dreszer, T.5
Katzman, S.6
Siepel, A.7
Pedersen, J.S.8
Bejerano, G.9
Baertsch, R.10
-
21
-
-
33750737061
-
Accelerated evolution of conserved noncoding sequences in humans
-
Prabhakar S., Noonan J.P., Paabo S., Rubin E.M. Accelerated evolution of conserved noncoding sequences in humans. Science 2006, 314:786.
-
(2006)
Science
, vol.314
, pp. 786
-
-
Prabhakar, S.1
Noonan, J.P.2
Paabo, S.3
Rubin, E.M.4
-
22
-
-
39049157173
-
Fast-evolving noncoding sequences in the human genome
-
Bird C.P., Stranger B.E., Liu M., Thomas D.J., Ingle C.E., Beazley C., Miller W., Hurles M.E., Dermitzakis E.T. Fast-evolving noncoding sequences in the human genome. Genome Biol 2007, 8:R118.
-
(2007)
Genome Biol
, vol.8
-
-
Bird, C.P.1
Stranger, B.E.2
Liu, M.3
Thomas, D.J.4
Ingle, C.E.5
Beazley, C.6
Miller, W.7
Hurles, M.E.8
Dermitzakis, E.T.9
-
23
-
-
39049088628
-
A genome-wide screen for noncoding elements important in primate evolution
-
Bush E.C., Lahn B.T. A genome-wide screen for noncoding elements important in primate evolution. BMC Evolut Biol 2008, 8:17.
-
(2008)
BMC Evolut Biol
, vol.8
, pp. 17
-
-
Bush, E.C.1
Lahn, B.T.2
-
24
-
-
38849145798
-
Targeted discovery of novel human exons by comparative genomics
-
Siepel A., Diekhans M., Brejova B., Langton L., Stevens M., Comstock C.L., Davis C., Ewing B., Oommen S., Lau C., et al. Targeted discovery of novel human exons by comparative genomics. Genome Res 2007, 17:1763-1773.
-
(2007)
Genome Res
, vol.17
, pp. 1763-1773
-
-
Siepel, A.1
Diekhans, M.2
Brejova, B.3
Langton, L.4
Stevens, M.5
Comstock, C.L.6
Davis, C.7
Ewing, B.8
Oommen, S.9
Lau, C.10
-
25
-
-
84860860685
-
Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication
-
Dennis M.Y., Nuttle X., Sudmant P.H., Antonacci F., Graves T.A., Nefedov M., Rosenfeld J.A., Sajjadian S., Malig M., Kotkiewicz H., et al. Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication. Cell 2012, 149:912-922.
-
(2012)
Cell
, vol.149
, pp. 912-922
-
-
Dennis, M.Y.1
Nuttle, X.2
Sudmant, P.H.3
Antonacci, F.4
Graves, T.A.5
Nefedov, M.6
Rosenfeld, J.A.7
Sajjadian, S.8
Malig, M.9
Kotkiewicz, H.10
-
26
-
-
84860858726
-
Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation
-
Charrier C., Joshi K., Coutinho-Budd J., Kim J.E., Lambert N., de Marchena J., Jin W.L., Vanderhaeghen P., Ghosh A., Sassa T., et al. Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation. Cell 2012, 149:923-935.
-
(2012)
Cell
, vol.149
, pp. 923-935
-
-
Charrier, C.1
Joshi, K.2
Coutinho-Budd, J.3
Kim, J.E.4
Lambert, N.5
de Marchena, J.6
Jin, W.L.7
Vanderhaeghen, P.8
Ghosh, A.9
Sassa, T.10
-
27
-
-
79952386187
-
Human-specific loss of regulatory DNA and the evolution of human-specific traits
-
McLean C.Y., Reno P.L., Pollen A.A., Bassan A.I., Capellini T.D., Guenther C., Indjeian V.B., Lim X., Menke D.B., Schaar B.T., et al. Human-specific loss of regulatory DNA and the evolution of human-specific traits. Nature 2011, 471:216-219.
-
(2011)
Nature
, vol.471
, pp. 216-219
-
-
McLean, C.Y.1
Reno, P.L.2
Pollen, A.A.3
Bassan, A.I.4
Capellini, T.D.5
Guenther, C.6
Indjeian, V.B.7
Lim, X.8
Menke, D.B.9
Schaar, B.T.10
-
28
-
-
77958453611
-
Noncoding sequences near duplicated genes evolve rapidly
-
Kostka D., Hahn M.W., Pollard K.S. Noncoding sequences near duplicated genes evolve rapidly. Genome Biol Evolut 2010, 2:518-533.
-
(2010)
Genome Biol Evolut
, vol.2
, pp. 518-533
-
-
Kostka, D.1
Hahn, M.W.2
Pollard, K.S.3
-
29
-
-
80052551536
-
Cactus: algorithms for genome multiple sequence alignment
-
Paten B., Earl D., Nguyen N., Diekhans M., Zerbino D., Haussler D. Cactus: algorithms for genome multiple sequence alignment. Genome Res 2011, 21:1512-1528.
-
(2011)
Genome Res
, vol.21
, pp. 1512-1528
-
-
Paten, B.1
Earl, D.2
Nguyen, N.3
Diekhans, M.4
Zerbino, D.5
Haussler, D.6
-
30
-
-
63849126687
-
Multiple whole-genome alignments without a reference organism
-
Dubchak I., Poliakov A., Kislyuk A., Brudno M. Multiple whole-genome alignments without a reference organism. Genome Res 2009, 19:682-689.
-
(2009)
Genome Res
, vol.19
, pp. 682-689
-
-
Dubchak, I.1
Poliakov, A.2
Kislyuk, A.3
Brudno, M.4
-
31
-
-
84857829246
-
Analysis of human accelerated DNA regions using archaic hominin genomes
-
Burbano H.A., Green R.E., Maricic T., Lalueza-Fox C., de la Rasilla M., Rosas A., Kelso J., Pollard K.S., Lachmann M., Paabo S. Analysis of human accelerated DNA regions using archaic hominin genomes. PLoS ONE 2012, 7:e32877.
-
(2012)
PLoS ONE
, vol.7
-
-
Burbano, H.A.1
Green, R.E.2
Maricic, T.3
Lalueza-Fox, C.4
de la Rasilla, M.5
Rosas, A.6
Kelso, J.7
Pollard, K.S.8
Lachmann, M.9
Paabo, S.10
-
32
-
-
74949138753
-
Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays
-
Drmanac R., Sparks A.B., Callow M.J., Halpern A.L., Burns N.L., Kermani B.G., Carnevali P., Nazarenko I., Nilsen G.B., Yeung G., et al. Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays. Science 2010, 327:78-81.
-
(2010)
Science
, vol.327
, pp. 78-81
-
-
Drmanac, R.1
Sparks, A.B.2
Callow, M.J.3
Halpern, A.L.4
Burns, N.L.5
Kermani, B.G.6
Carnevali, P.7
Nazarenko, I.8
Nilsen, G.B.9
Yeung, G.10
-
33
-
-
84857214297
-
The role of GC-biased gene conversion in shaping the fastest evolving regions of the human genome
-
Kostka D., Hubisz M.J., Siepel A., Pollard K.S. The role of GC-biased gene conversion in shaping the fastest evolving regions of the human genome. Mol Biol Evolut 2012, 29:1047-1057.
-
(2012)
Mol Biol Evolut
, vol.29
, pp. 1047-1057
-
-
Kostka, D.1
Hubisz, M.J.2
Siepel, A.3
Pollard, K.S.4
-
34
-
-
77953204523
-
GC-biased evolution near human accelerated regions
-
Katzman S., Kern A.D., Pollard K.S., Salama S.R., Haussler D. GC-biased evolution near human accelerated regions. PLoS Genet 2010, 6:e1000960.
-
(2010)
PLoS Genet
, vol.6
-
-
Katzman, S.1
Kern, A.D.2
Pollard, K.S.3
Salama, S.R.4
Haussler, D.5
-
35
-
-
34248641119
-
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
-
Galtier N., Duret L. Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution. Trend Genet 2007, 23:273-277.
-
(2007)
Trend Genet
, vol.23
, pp. 273-277
-
-
Galtier, N.1
Duret, L.2
-
36
-
-
77956463212
-
Detecting positive selection within genomes: the problem of biased gene conversion
-
Ratnakumar A., Mousset S., Glemin S., Berglund J., Galtier N., Duret L., Webster M.T. Detecting positive selection within genomes: the problem of biased gene conversion. Philos Trans R Soc Lond B Biol Sci 2010, 365:2571-2580.
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 2571-2580
-
-
Ratnakumar, A.1
Mousset, S.2
Glemin, S.3
Berglund, J.4
Galtier, N.5
Duret, L.6
Webster, M.T.7
-
37
-
-
58849161775
-
Hotspots of biased nucleotide substitutions in human genes
-
Berglund J., Pollard K.S., Webster M.T. Hotspots of biased nucleotide substitutions in human genes. PLoS Biol 2009, 7:e26.
-
(2009)
PLoS Biol
, vol.7
-
-
Berglund, J.1
Pollard, K.S.2
Webster, M.T.3
-
38
-
-
84884630559
-
A model-based analysis of GC-biased gene conversion in the human and chimpanzee genomes
-
Capra J.A., Hubisz M.J., Kostka D., Pollard K.S., Siepel A. A model-based analysis of GC-biased gene conversion in the human and chimpanzee genomes. PLoS Genet 2013, 9:e1003684.
-
(2013)
PLoS Genet
, vol.9
-
-
Capra, J.A.1
Hubisz, M.J.2
Kostka, D.3
Pollard, K.S.4
Siepel, A.5
-
39
-
-
84856383378
-
Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots
-
Katzman S., Capra J.A., Haussler D., Pollard K.S. Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots. Genome Biol Evolut 2011, 3:614-626.
-
(2011)
Genome Biol Evolut
, vol.3
, pp. 614-626
-
-
Katzman, S.1
Capra, J.A.2
Haussler, D.3
Pollard, K.S.4
-
40
-
-
80155192425
-
Loss-of-function mutation in a repressor module of human-specifically activated enhancer HACNS1
-
Sumiyama K., Saitou N. Loss-of-function mutation in a repressor module of human-specifically activated enhancer HACNS1. Mol Biol Evolut 2011, 28:3005-3007.
-
(2011)
Mol Biol Evolut
, vol.28
, pp. 3005-3007
-
-
Sumiyama, K.1
Saitou, N.2
-
41
-
-
59849095985
-
Comment on "Human-specific gain of function in a developmental enhancer"
-
714; author reply
-
Duret L., Galtier N. Comment on "Human-specific gain of function in a developmental enhancer". Science 2009, 323:714. 714; author reply.
-
(2009)
Science
, vol.323
, pp. 714
-
-
Duret, L.1
Galtier, N.2
-
42
-
-
79958259071
-
Genomic signatures of diet-related shifts during human origins
-
Babbitt C.C., Warner L.R., Fedrigo O., Wall C.E., Wray G.A. Genomic signatures of diet-related shifts during human origins. Proc Biol Sci R Soc 2011, 278:961-969.
-
(2011)
Proc Biol Sci R Soc
, vol.278
, pp. 961-969
-
-
Babbitt, C.C.1
Warner, L.R.2
Fedrigo, O.3
Wall, C.E.4
Wray, G.A.5
-
43
-
-
84887497668
-
A fast-evolving human NPAS3 enhancer gained reporter expression in the developing forebrain of transgenic mice
-
Kamm G.B., Lopez-Leal R., Lorenzo J.R., Franchini L.F. A fast-evolving human NPAS3 enhancer gained reporter expression in the developing forebrain of transgenic mice. Philos Trans R Soc Lond B Biol Sci 2013, 368:20130019.
-
(2013)
Philos Trans R Soc Lond B Biol Sci
, vol.368
, pp. 20130019
-
-
Kamm, G.B.1
Lopez-Leal, R.2
Lorenzo, J.R.3
Franchini, L.F.4
-
44
-
-
84876520556
-
The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome
-
Kamm G.B., Pisciottano F., Kliger R., Franchini L.F. The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome. Mol Biol Evolut 2013, 30:1088-1102.
-
(2013)
Mol Biol Evolut
, vol.30
, pp. 1088-1102
-
-
Kamm, G.B.1
Pisciottano, F.2
Kliger, R.3
Franchini, L.F.4
-
45
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow J., Frankish A., Gonzalez J.M., Tapanari E., Diekhans M., Kokocinski F., Aken B.L., Barrell D., Zadissa A., Searle S., et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res 2012, 22:1760-1774.
-
(2012)
Genome Res
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
-
46
-
-
84898747543
-
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
-
Washietl S., Kellis M., Garber M. Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals. Genome Res 2014, 24:616-628.
-
(2014)
Genome Res
, vol.24
, pp. 616-628
-
-
Washietl, S.1
Kellis, M.2
Garber, M.3
-
47
-
-
84903388630
-
Integrating diverse datasets improves developmental enhancer prediction
-
Erwin G.D., Oksenberg N., Truty R.M., Kostka D., Murphy K.K., Pollard K.S., Ahituv N., Capra J.A. Integrating diverse datasets improves developmental enhancer prediction. PLoS Comput Biol 2014.
-
(2014)
PLoS Comput Biol
-
-
Erwin, G.D.1
Oksenberg, N.2
Truty, R.M.3
Kostka, D.4
Murphy, K.K.5
Pollard, K.S.6
Ahituv, N.7
Capra, J.A.8
-
48
-
-
84879911829
-
The evolution of lineage-specific regulatory activities in the human embryonic limb
-
Cotney J., Leng J., Yin J., Reilly S.K., DeMare L.E., Emera D., Ayoub A.E., Rakic P., Noonan J.P. The evolution of lineage-specific regulatory activities in the human embryonic limb. Cell 2013, 154:185-196.
-
(2013)
Cell
, vol.154
, pp. 185-196
-
-
Cotney, J.1
Leng, J.2
Yin, J.3
Reilly, S.K.4
DeMare, L.E.5
Emera, D.6
Ayoub, A.E.7
Rakic, P.8
Noonan, J.P.9
-
49
-
-
77957225928
-
The importance of being cis: evolution of orthologous fish and mammalian enhancer activity
-
Ritter D.I., Li Q., Kostka D., Pollard K.S., Guo S., Chuang J.H. The importance of being cis: evolution of orthologous fish and mammalian enhancer activity. Mol Biol Evolut 2010, 27:2322-2332.
-
(2010)
Mol Biol Evolut
, vol.27
, pp. 2322-2332
-
-
Ritter, D.I.1
Li, Q.2
Kostka, D.3
Pollard, K.S.4
Guo, S.5
Chuang, J.H.6
-
50
-
-
84863229330
-
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
-
Melnikov A., Murugan A., Zhang X., Tesileanu T., Wang L., Rogov P., Feizi S., Gnirke A., Callan C.G., Kinney J.B., et al. Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay. Nat Biotechnol 2012, 30:271-277.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 271-277
-
-
Melnikov, A.1
Murugan, A.2
Zhang, X.3
Tesileanu, T.4
Wang, L.5
Rogov, P.6
Feizi, S.7
Gnirke, A.8
Callan, C.G.9
Kinney, J.B.10
-
51
-
-
84863230316
-
Massively parallel functional dissection of mammalian enhancers in vivo
-
Patwardhan R.P., Hiatt J.B., Witten D.M., Kim M.J., Smith R.P., May D., Lee C., Andrie J.M., Lee S.I., Cooper G.M., et al. Massively parallel functional dissection of mammalian enhancers in vivo. Nat Biotechnol 2012, 30:265-270.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 265-270
-
-
Patwardhan, R.P.1
Hiatt, J.B.2
Witten, D.M.3
Kim, M.J.4
Smith, R.P.5
May, D.6
Lee, C.7
Andrie, J.M.8
Lee, S.I.9
Cooper, G.M.10
-
52
-
-
84886993480
-
CRISPR interference (CRISPRi) for sequence-specific control of gene expression
-
Larson M.H., Gilbert L.A., Wang X., Lim W.A., Weissman J.S., Qi L.S. CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat Protoc 2013, 8:2180-2196.
-
(2013)
Nat Protoc
, vol.8
, pp. 2180-2196
-
-
Larson, M.H.1
Gilbert, L.A.2
Wang, X.3
Lim, W.A.4
Weissman, J.S.5
Qi, L.S.6
-
53
-
-
34250659350
-
More genes underwent positive selection in chimpanzee evolution than in human evolution
-
Bakewell M.A., Shi P., Zhang J. More genes underwent positive selection in chimpanzee evolution than in human evolution. Proc Natl Acad Sci U S A 2007, 104:7489-7494.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 7489-7494
-
-
Bakewell, M.A.1
Shi, P.2
Zhang, J.3
-
54
-
-
74949092081
-
Detection of nonneutral substitution rates on mammalian phylogenies
-
Pollard K.S., Hubisz M.J., Rosenbloom K.R., Siepel A. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res 2010, 20:110-121.
-
(2010)
Genome Res
, vol.20
, pp. 110-121
-
-
Pollard, K.S.1
Hubisz, M.J.2
Rosenbloom, K.R.3
Siepel, A.4
-
55
-
-
35348988170
-
Recent and ongoing selection in the human genome
-
Nielsen R., Hellmann I., Hubisz M., Bustamante C., Clark A.G. Recent and ongoing selection in the human genome. Nat Rev Genet 2007, 8:857-868.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 857-868
-
-
Nielsen, R.1
Hellmann, I.2
Hubisz, M.3
Bustamante, C.4
Clark, A.G.5
-
56
-
-
34547803197
-
PAML 4 phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4 phylogenetic analysis by maximum likelihood. Mol Biol Evolut 2007, 24:1586-1591.
-
(2007)
Mol Biol Evolut
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
57
-
-
33646272409
-
Identification and classification of conserved RNA secondary structures in the human genome
-
Pedersen J.S., Bejerano G., Siepel A., Rosenbloom K., Lindblad-Toh K., Lander E.S., Kent J., Miller W., Haussler D. Identification and classification of conserved RNA secondary structures in the human genome. PLoS Comput Biol 2006, 2:e33.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Pedersen, J.S.1
Bejerano, G.2
Siepel, A.3
Rosenbloom, K.4
Lindblad-Toh, K.5
Lander, E.S.6
Kent, J.7
Miller, W.8
Haussler, D.9
|