-
1
-
-
0001485113
-
Sex, sex inheritance and sex determination in Paramecium aurelia
-
Sonneborn, T.M. (1937) Sex, sex inheritance and sex determination in Paramecium aurelia. Proc. Natl Acad. Sci. U.S.A., 23, 378-385.
-
(1937)
Proc. Natl Acad. Sci. U.S.A.
, vol.23
, pp. 378-385
-
-
Sonneborn, T.M.1
-
2
-
-
80052733246
-
Mating type determination in Paramecium aurelia, a model of nucleo-cytoplasmic interaction
-
Nanney, D.L. (1953) Mating type determination in Paramecium aurelia, a model of nucleo-cytoplasmic interaction. Proc. Natl Acad. Sci. U.S.A., 39, 113-119.
-
(1953)
Proc. Natl Acad. Sci. U.S.A.
, vol.39
, pp. 113-119
-
-
Nanney, D.L.1
-
5
-
-
0002947085
-
The epigenotype
-
Waddington, C.H. (1942) The Epigenotype. Endeavour, 1, 18-20.
-
(1942)
Endeavour
, vol.1
, pp. 18-20
-
-
Waddington, C.H.1
-
6
-
-
70449235722
-
Genetic approaches to somatic cell variation: Summary comment
-
discussion 392-401
-
Lederberg, J. (1958) Genetic approaches to somatic cell variation: summary comment. J. Cell. Physiol. Supplement, 52, 383-392; discussion 392-401.
-
(1958)
J. Cell. Physiol. Supplement
, vol.52
, pp. 383-392
-
-
Lederberg, J.1
-
7
-
-
0035839058
-
Genes, genetics, and epigenetics: A correspondence
-
Wu, C. and Morris, J.R. (2001) Genes, genetics, and epigenetics: a correspondence. Science, 293, 1103-1105.
-
(2001)
Science
, vol.293
, pp. 1103-1105
-
-
Wu, C.1
Morris, J.R.2
-
8
-
-
33645228796
-
Sonneborn and the cytoplasm
-
Preer, J.R. and Jr,. (2006) Sonneborn and the cytoplasm. Genetics, 172, 1373-1377.
-
(2006)
Genetics
, vol.172
, pp. 1373-1377
-
-
Preer, J.R.1
-
9
-
-
0036359622
-
Non-mendelian inheritance and homology-dependent effects in ciliates
-
Meyer, E. and Garnier, O. (2002) Non-mendelian inheritance and homology-dependent effects in ciliates. Adv. Genet., 46, 305-337.
-
(2002)
Adv. Genet.
, vol.46
, pp. 305-337
-
-
Meyer, E.1
Garnier, O.2
-
10
-
-
0029103019
-
Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia
-
Duharcourt, S., Butler, A. and Meyer, E. (1995) Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia. Genes Dev., 9, 2065-2077.
-
(1995)
Genes Dev.
, vol.9
, pp. 2065-2077
-
-
Duharcourt, S.1
Butler, A.2
Meyer, E.3
-
11
-
-
0022803279
-
Induced change in a non-mendelian determinant by transplantation of macronucleoplasm in Paramecium tetraurelia
-
Harumoto, T. (1986) Induced change in a non-mendelian determinant by transplantation of macronucleoplasm in Paramecium tetraurelia. Mol. Cell. Biol., 6, 3498-3501.
-
(1986)
Mol. Cell. Biol.
, vol.6
, pp. 3498-3501
-
-
Harumoto, T.1
-
12
-
-
0021733417
-
Mendelian and non-mendelian mutations affecting surface antigen expression in Paramecium tetraurelia
-
Epstein, L.M. and Forney, J.D. (1984) Mendelian and non-mendelian mutations affecting surface antigen expression in Paramecium tetraurelia. Mol. Cell. Biol., 4, 1583-1590.
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 1583-1590
-
-
Epstein, L.M.1
Forney, J.D.2
-
13
-
-
0024743054
-
Microinjection of plasmid DNA encoding the A surface antigen of Paramecium tetraurelia restores the ability to regenerate a wild-type macronucleus
-
Koizumi, S. and Kobayashi, S. (1989) Microinjection of plasmid DNA encoding the A surface antigen of Paramecium tetraurelia restores the ability to regenerate a wild-type macronucleus. Mol. Cell. Biol., 9, 4398-4401.
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 4398-4401
-
-
Koizumi, S.1
Kobayashi, S.2
-
14
-
-
0025993430
-
Permanent rescue of a non-Mendelian mutation of Paramecium by microinjection of specific DNA sequences
-
Jessop-Murray, H., Martin, L.D., Gilley, D., Preer, J.R. Jr. and Polisky, B. (1991) Permanent rescue of a non-Mendelian mutation of Paramecium by microinjection of specific DNA sequences. Genetics, 129, 727-734.
-
(1991)
Genetics
, vol.129
, pp. 727-734
-
-
Jessop-Murray, H.1
Martin, L.D.2
Gilley, D.3
Preer Jr., J.R.4
Polisky, B.5
-
15
-
-
0028231416
-
Non-Mendelian inheritance of macronuclear mutations is gene specific in Paramecium tetraurelia
-
Scott, J.M., Mikami, K., Leeck, C.L. and Forney, J.D. (1994) Non-Mendelian inheritance of macronuclear mutations is gene specific in Paramecium tetraurelia. Mol. Cell. Biol., 14, 2479-2484.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 2479-2484
-
-
Scott, J.M.1
Mikami, K.2
Leeck, C.L.3
Forney, J.D.4
-
16
-
-
0029953126
-
Non-Mendelian, heritable blocks to DNA rearrangement are induced by loading the somatic nucleus of Tetrahymena thermophila with germ line-limited DNA
-
Chalker, D.L. and Yao, M.C. (1996) Non-Mendelian, heritable blocks to DNA rearrangement are induced by loading the somatic nucleus of Tetrahymena thermophila with germ line-limited DNA. Mol. Cell. Biol., 16, 3658-3667.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 3658-3667
-
-
Chalker, D.L.1
Yao, M.C.2
-
17
-
-
84901250298
-
Genome-defence small RNAs exapted for epigenetic mating-type inheritance
-
Singh, D.P., Saudemont, B., Guglielmi, G., Arnaiz, O., Gout, J.F., Prajer, M., Potekhin, A., Przybos, E., Aubusson-Fleury, A., Bhullar, S. et al. (2014) Genome-defence small RNAs exapted for epigenetic mating-type inheritance. Nature, 509, 447-452.
-
(2014)
Nature
, vol.509
, pp. 447-452
-
-
Singh, D.P.1
Saudemont, B.2
Guglielmi, G.3
Arnaiz, O.4
Gout, J.F.5
Prajer, M.6
Potekhin, A.7
Przybos, E.8
Aubusson-Fleury, A.9
Bhullar, S.10
-
18
-
-
84893016282
-
Functional diversification of dicer-like proteins and small RNAs required for genome sculpting
-
Sandoval, P.Y., Swart, E.C., Arambasic, M. and Nowacki, M. (2014) Functional diversification of dicer-like proteins and small RNAs required for genome sculpting. Dev. Cell, 28, 174-188.
-
(2014)
Dev. Cell
, vol.28
, pp. 174-188
-
-
Sandoval, P.Y.1
Swart, E.C.2
Arambasic, M.3
Nowacki, M.4
-
19
-
-
0037145031
-
Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena
-
Mochizuki, K., Fine, N.A., Fujisawa, T. and Gorovsky, M.A. (2002) Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena. Cell, 110, 689-699.
-
(2002)
Cell
, vol.110
, pp. 689-699
-
-
Mochizuki, K.1
Fine, N.A.2
Fujisawa, T.3
Gorovsky, M.A.4
-
20
-
-
1942535718
-
Small RNAs in genome rearrangement in Tetrahymena
-
Mochizuki, K. and Gorovsky, M.A. (2004) Small RNAs in genome rearrangement in Tetrahymena. Curr. Opin. Genet. Dev., 14, 181-187.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 181-187
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
21
-
-
13744251887
-
Communication between parental and developing genomes during tetrahymena nuclear differentiation is likely mediated by homologous RNAs
-
Chalker, D.L., Fuller, P. and Yao, M.-C. (2005) Communication between parental and developing genomes during tetrahymena nuclear differentiation is likely mediated by homologous RNAs. Genetics, 169, 149-160.
-
(2005)
Genetics
, vol.169
, pp. 149-160
-
-
Chalker, D.L.1
Fuller, P.2
Yao, M.-C.3
-
22
-
-
84865010587
-
Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus
-
Zahler, A.M., Neeb, Z.T., Lin, A. and Katzman, S. (2012) Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus. PloS One, 7, e42371.
-
(2012)
PloS One
, vol.7
-
-
Zahler, A.M.1
Neeb, Z.T.2
Lin, A.3
Katzman, S.4
-
23
-
-
84870860974
-
Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement
-
Fang, W., Wang, X., Bracht, J.R., Nowacki, M. and Landweber, L.F. (2012) Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement. Cell, 151, 1243-1255.
-
(2012)
Cell
, vol.151
, pp. 1243-1255
-
-
Fang, W.1
Wang, X.2
Bracht, J.R.3
Nowacki, M.4
Landweber, L.F.5
-
24
-
-
51449085579
-
Origins and evolution of eukaryotic RNA interference
-
Shabalina, S.A. and Koonin, E.V. (2008) Origins and evolution of eukaryotic RNA interference. Trends Ecol. Evol., 23, 578-587.
-
(2008)
Trends Ecol. Evol.
, vol.23
, pp. 578-587
-
-
Shabalina, S.A.1
Koonin, E.V.2
-
25
-
-
84893804492
-
New perspectives on the diversification of the RNA interference system: Insights from comparative genomics and small RNA sequencing
-
Burroughs, A.M., Ando, Y. and Aravind, L. (2014) New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing. Wiley Interdisciplinary Rev. RNA, 5, 141-181.
-
(2014)
Wiley Interdisciplinary Rev. RNA
, vol.5
, pp. 141-181
-
-
Burroughs, A.M.1
Ando, Y.2
Aravind, L.3
-
26
-
-
78049354472
-
A small-RNA perspective on gametogenesis, fertilization, and early zygotic development
-
Bourc'his, D. and Voinnet, O. (2010) A small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science, 330, 617-622.
-
(2010)
Science
, vol.330
, pp. 617-622
-
-
Bourc'His, D.1
Voinnet, O.2
-
27
-
-
84862777814
-
A role for small RNAs in DNA double-strand break repair
-
Wei, W., Ba, Z., Gao, M., Wu, Y., Ma, Y., Amiard, S., White, C.I., Rendtlew Danielsen, J.M., Yang, Y.G. and Qi, Y. (2012) A role for small RNAs in DNA double-strand break repair. Cell, 149, 101-112.
-
(2012)
Cell
, vol.149
, pp. 101-112
-
-
Wei, W.1
Ba, Z.2
Gao, M.3
Wu, Y.4
Ma, Y.5
Amiard, S.6
White, C.I.7
Rendtlew Danielsen, J.M.8
Yang, Y.G.9
Qi, Y.10
-
28
-
-
84868091999
-
A small RNA response at DNA ends in Drosophila
-
Michalik, K.M., Bottcher, R. and Forstemann, K. (2012) A small RNA response at DNA ends in Drosophila. Nucleic Acids Res., 40, 9596-9603.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 9596-9603
-
-
Michalik, K.M.1
Bottcher, R.2
Forstemann, K.3
-
29
-
-
84864647205
-
Site-specific DICER and DROSHA RNA products control the DNA-damage response
-
Francia, S., Michelini, F., Saxena, A., Tang, D., de Hoon, M., Anelli, V., Mione, M., Carninci, P. and d'Adda di Fagagna, F. (2012) Site-specific DICER and DROSHA RNA products control the DNA-damage response. Nature, 488, 231-235.
-
(2012)
Nature
, vol.488
, pp. 231-235
-
-
Francia, S.1
Michelini, F.2
Saxena, A.3
Tang, D.4
De Hoon, M.5
Anelli, V.6
Mione, M.7
Carninci, P.8
D'Adda Di Fagagna, F.9
-
30
-
-
79960056273
-
Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling
-
Bouhouche, K., Gout, J.F., Kapusta, A., Betermier, M. and Meyer, E. (2011) Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling. Nucleic Acids Res., 39, 4249-4264.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4249-4264
-
-
Bouhouche, K.1
Gout, J.F.2
Kapusta, A.3
Betermier, M.4
Meyer, E.5
-
31
-
-
63349109487
-
Silencing-associated and meiosis-specific small RNA pathways in Paramecium tetraurelia
-
Lepere, G., Nowacki, M., Serrano, V., Gout, J.F., Guglielmi, G., Duharcourt, S. and Meyer, E. (2009) Silencing-associated and meiosis-specific small RNA pathways in Paramecium tetraurelia. Nucleic Acids Res., 37, 903-915.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 903-915
-
-
Lepere, G.1
Nowacki, M.2
Serrano, V.3
Gout, J.F.4
Guglielmi, G.5
Duharcourt, S.6
Meyer, E.7
-
32
-
-
0035504570
-
Transgene-mediated post-transcriptional gene silencing is inhibited by 3′ non-coding sequences in Paramecium
-
Galvani, A. and Sperling, L. (2001) Transgene-mediated post-transcriptional gene silencing is inhibited by 3′ non-coding sequences in Paramecium. Nucleic Acids Res., 29, 4387-4394.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4387-4394
-
-
Galvani, A.1
Sperling, L.2
-
33
-
-
0036137143
-
RNA interference by feeding in Paramecium
-
Galvani, A. and Sperling, L. (2002) RNA interference by feeding in Paramecium. Trends Genet., 18, 11-12.
-
(2002)
Trends Genet.
, vol.18
, pp. 11-12
-
-
Galvani, A.1
Sperling, L.2
-
34
-
-
0031898646
-
Homology-dependent gene silencing in Paramecium
-
Ruiz, F., Vayssie, L., Klotz, C., Sperling, L. and Madeddu, L. (1998) Homology-dependent gene silencing in Paramecium. Mol. Biol. Cell, 9, 931-943.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 931-943
-
-
Ruiz, F.1
Vayssie, L.2
Klotz, C.3
Sperling, L.4
Madeddu, L.5
-
35
-
-
84903161182
-
A forward genetic screen reveals essential and non-essential RNAi factors in Paramecium tetraurelia
-
Marker, S., Carradec, Q., Tanty, V., Arnaiz, O. and Meyer, E. (2014) A forward genetic screen reveals essential and non-essential RNAi factors in Paramecium tetraurelia. Nucleic Acids Res., 42, 7268-7280.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 7268-7280
-
-
Marker, S.1
Carradec, Q.2
Tanty, V.3
Arnaiz, O.4
Meyer, E.5
-
36
-
-
77955082708
-
Distinct RNA-dependent RNA polymerases are required for RNAi triggered by double-stranded RNA versus truncated transgenes in Paramecium tetraurelia
-
Marker, S., Le Mouel, A., Meyer, E. and Simon, M. (2010) Distinct RNA-dependent RNA polymerases are required for RNAi triggered by double-stranded RNA versus truncated transgenes in Paramecium tetraurelia. Nucleic Acids Res., 38, 4092-4107.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4092-4107
-
-
Marker, S.1
Le Mouel, A.2
Meyer, E.3
Simon, M.4
-
37
-
-
84868089881
-
The Paramecium germline genome provides a niche for intragenic parasitic DNA: Evolutionary dynamics of internal eliminated sequences
-
Arnaiz, O., Mathy, N., Baudry, C., Malinsky, S., Aury, J.M., Wilkes, C.D., Garnier, O., Labadie, K., Lauderdale, B.E., Le Mouel, A. et al. (2012) The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences. PLoS Genet., 8, e1002984.
-
(2012)
PLoS Genet.
, vol.8
-
-
Arnaiz, O.1
Mathy, N.2
Baudry, C.3
Malinsky, S.4
Aury, J.M.5
Wilkes, C.D.6
Garnier, O.7
Labadie, K.8
Lauderdale, B.E.9
Le Mouel, A.10
-
38
-
-
0142184930
-
Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia
-
Le Mouel, A., Butler, A., Caron, F. and Meyer, E. (2003) Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia. Eukaryot. Cell, 2, 1076-1090.
-
(2003)
Eukaryot. Cell
, vol.2
, pp. 1076-1090
-
-
Le Mouel, A.1
Butler, A.2
Caron, F.3
Meyer, E.4
-
39
-
-
51249187900
-
DNA amounts in the nuclei of Paramecium aurelia and Tetrahymena pyriformis
-
Gibson, I. and Martin, N. (1971) DNA amounts in the nuclei of Paramecium aurelia and Tetrahymena pyriformis. Chromosoma, 35, 374-382.
-
(1971)
Chromosoma
, vol.35
, pp. 374-382
-
-
Gibson, I.1
Martin, N.2
-
40
-
-
70350639013
-
PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia
-
Baudry, C., Malinsky, S., Restituito, M., Kapusta, A., Rosa, S., Meyer, E. and Betermier, M. (2009) PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia. Genes Dev., 23, 2478-2483.
-
(2009)
Genes Dev.
, vol.23
, pp. 2478-2483
-
-
Baudry, C.1
Malinsky, S.2
Restituito, M.3
Kapusta, A.4
Rosa, S.5
Meyer, E.6
Betermier, M.7
-
41
-
-
0141752807
-
Processing of double-strand breaks is involved in the precise excision of paramecium internal eliminated sequences
-
Gratias, A. and Betermier, M. (2003) Processing of double-strand breaks is involved in the precise excision of paramecium internal eliminated sequences. Mol. Cell. Biol., 23, 7152-7162.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 7152-7162
-
-
Gratias, A.1
Betermier, M.2
-
42
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker, T., Sabot, F., Hua-Van, A., Bennetzen, J.L., Capy, P., Chalhoub, B., Flavell, A., Leroy, P., Morgante, M., Panaud, O. et al. (2007) A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet., 8, 973-982.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
-
43
-
-
0030199150
-
Excision of the piggyBac transposable element in vitro is a precise event that is enhanced by the expression of its encoded transposase
-
Elick, T.A., Bauser, C.A. and Fraser, M.J. (1996) Excision of the piggyBac transposable element in vitro is a precise event that is enhanced by the expression of its encoded transposase. Genetica, 98, 33-41.
-
(1996)
Genetica
, vol.98
, pp. 33-41
-
-
Elick, T.A.1
Bauser, C.A.2
Fraser, M.J.3
-
44
-
-
0029045905
-
Consensus inverted terminal repeat sequence of Paramecium IESs: Resemblance to termini of Tc1-related and Euplotes Tec transposons
-
Klobutcher, L.A. and Herrick, G. (1995) Consensus inverted terminal repeat sequence of Paramecium IESs: resemblance to termini of Tc1-related and Euplotes Tec transposons. Nucleic Acids Res., 23, 2006-2013.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2006-2013
-
-
Klobutcher, L.A.1
Herrick, G.2
-
45
-
-
0031754574
-
Homology-dependent maternal inhibition of developmental excision of internal eliminated sequences in Paramecium tetraurelia
-
Duharcourt, S., Keller, A.M. and Meyer, E. (1998) Homology-dependent maternal inhibition of developmental excision of internal eliminated sequences in Paramecium tetraurelia. Mol. Cell. Biol., 18, 7075-7085.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 7075-7085
-
-
Duharcourt, S.1
Keller, A.M.2
Meyer, E.3
-
46
-
-
0031930311
-
A mutation in Paramecium tetraurelia reveals functional and structural features of developmentally excised DNA elements
-
Mayer, K.M., Mikami, K. and Forney, J.D. (1998) A mutation in Paramecium tetraurelia reveals functional and structural features of developmentally excised DNA elements. Genetics, 148, 139-149.
-
(1998)
Genetics
, vol.148
, pp. 139-149
-
-
Mayer, K.M.1
Mikami, K.2
Forney, J.D.3
-
47
-
-
44849120634
-
Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia
-
Lepere, G., Betermier, M., Meyer, E. and Duharcourt, S. (2008) Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia. Genes Dev., 22, 1501-1512.
-
(2008)
Genes Dev.
, vol.22
, pp. 1501-1512
-
-
Lepere, G.1
Betermier, M.2
Meyer, E.3
Duharcourt, S.4
-
48
-
-
4444383501
-
Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement
-
Mochizuki, K. and Gorovsky, M.A. (2004) Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement. Genes Dev., 18, 2068-2073.
-
(2004)
Genes Dev.
, vol.18
, pp. 2068-2073
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
49
-
-
11844263265
-
A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase
-
Mochizuki, K. and Gorovsky, M.A. (2005) A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase. Genes Dev., 19, 77-89.
-
(2005)
Genes Dev.
, vol.19
, pp. 77-89
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
50
-
-
84864757507
-
Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena
-
Schoeberl, U.E., Kurth, H.M., Noto, T. and Mochizuki, K. (2012) Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena. Genes Dev., 26, 1729-1742.
-
(2012)
Genes Dev.
, vol.26
, pp. 1729-1742
-
-
Schoeberl, U.E.1
Kurth, H.M.2
Noto, T.3
Mochizuki, K.4
-
51
-
-
77649158885
-
The Tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus
-
Noto, T., Kurth, H.M., Kataoka, K., Aronica, L., DeSouza, L.V., Siu, K.W., Pearlman, R.E., Gorovsky, M.A. and Mochizuki, K. (2010) The Tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus. Cell, 140, 692-703.
-
(2010)
Cell
, vol.140
, pp. 692-703
-
-
Noto, T.1
Kurth, H.M.2
Kataoka, K.3
Aronica, L.4
Desouza, L.V.5
Siu, K.W.6
Pearlman, R.E.7
Gorovsky, M.A.8
Mochizuki, K.9
-
52
-
-
26444477370
-
Germ line transcripts are processed by a Dicer-like protein that is essential for developmentally programmed genome rearrangements of Tetrahymena thermophila
-
Malone, C.D., Anderson, A.M., Motl, J.A., Rexer, C.H. and Chalker, D.L. (2005) Germ line transcripts are processed by a Dicer-like protein that is essential for developmentally programmed genome rearrangements of Tetrahymena thermophila. Mol. Cell. Biol., 25, 9151-9164.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 9151-9164
-
-
Malone, C.D.1
Anderson, A.M.2
Motl, J.A.3
Rexer, C.H.4
Chalker, D.L.5
-
53
-
-
77952326283
-
A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila
-
Cheng, C.Y., Vogt, A., Mochizuki, K. and Yao, M.C. (2010) A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila. Mol. Biol. Cell, 21, 1753-1762.
-
(2010)
Mol. Biol. Cell
, vol.21
, pp. 1753-1762
-
-
Cheng, C.Y.1
Vogt, A.2
Mochizuki, K.3
Yao, M.C.4
-
54
-
-
84861809174
-
RNA-guided DNA rearrangements in ciliates: Is the best genome defence a good offence?
-
Coyne, R.S., Lhuillier-Akakpo, M. and Duharcourt, S. (2012) RNA-guided DNA rearrangements in ciliates: is the best genome defence a good offence? Biol. Cell, 104, 309-325.
-
(2012)
Biol. Cell
, vol.104
, pp. 309-325
-
-
Coyne, R.S.1
Lhuillier-Akakpo, M.2
Duharcourt, S.3
-
55
-
-
84881048808
-
Epigenetics of ciliates
-
Chalker, D.L., Meyer, E. and Mochizuki, K. (2013) Epigenetics of ciliates. Cold Spring Harb. Perspect. Biol., 5, a017764.
-
(2013)
Cold Spring Harb. Perspect. Biol.
, vol.5
-
-
Chalker, D.L.1
Meyer, E.2
Mochizuki, K.3
-
56
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
57
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G. and Durbin, R. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
58
-
-
78651325661
-
ParameciumDB in 2011: New tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia
-
Arnaiz, O. and Sperling, L. (2011) ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia. Nucleic Acids Res., 39, D632-D636.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Arnaiz, O.1
Sperling, L.2
-
59
-
-
41649113803
-
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
-
Duret, L., Cohen, J., Jubin, C., Dessen, P., Gout, J.F., Mousset, S., Aury, J.M., Jaillon, O., Noel, B., Arnaiz, O. et al. (2008) Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline. Genome Res., 18, 585-596.
-
(2008)
Genome Res.
, vol.18
, pp. 585-596
-
-
Duret, L.1
Cohen, J.2
Jubin, C.3
Dessen, P.4
Gout, J.F.5
Mousset, S.6
Aury, J.M.7
Jaillon, O.8
Noel, B.9
Arnaiz, O.10
-
60
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G.E., Hon, G., Chandonia, J.M. and Brenner, S.E. (2004) WebLogo: a sequence logo generator. Genome Res., 14, 1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
61
-
-
24944572234
-
Nowa1p and Nowa2p: Novel putative RNA binding proteins involved in trans-nuclear crosstalk in Paramecium tetraurelia
-
Nowacki, M., Zagorski-Ostoja, W. and Meyer, E. (2005) Nowa1p and Nowa2p: novel putative RNA binding proteins involved in trans-nuclear crosstalk in Paramecium tetraurelia. Curr. Biol., 15, 1616-1628.
-
(2005)
Curr. Biol.
, vol.15
, pp. 1616-1628
-
-
Nowacki, M.1
Zagorski-Ostoja, W.2
Meyer, E.3
-
62
-
-
33745622868
-
Two Sample Logo: A graphical representation of the differences between two sets of sequence alignments
-
Vacic, V., Lakoucheva, L.M. and Radivojac, P. (2006) Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. Bioinformatics, 22, 1536-1537.
-
(2006)
Bioinformatics
, vol.22
, pp. 1536-1537
-
-
Vacic, V.1
Lakoucheva, L.M.2
Radivojac, P.3
-
63
-
-
84891615810
-
Spliced DNA sequences in the Paramecium germline: Their properties and evolutionary potential
-
Catania, F., McGrath, C.L., Doak, T.G. and Lynch, M. (2013) Spliced DNA sequences in the Paramecium germline: their properties and evolutionary potential. Genome Biol. Evol., 5, 1200-1211.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 1200-1211
-
-
Catania, F.1
McGrath, C.L.2
Doak, T.G.3
Lynch, M.4
-
64
-
-
84868579284
-
Extraordinary genome stability in the ciliate Paramecium tetraurelia
-
Sung, W., Tucker, A.E., Doak, T.G., Choi, E., Thomas, W.K. and Lynch, M. (2012) Extraordinary genome stability in the ciliate Paramecium tetraurelia. Proc. Natl Acad. Sci. USA, 109, 19339-19344.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 19339-19344
-
-
Sung, W.1
Tucker, A.E.2
Doak, T.G.3
Choi, E.4
Thomas, W.K.5
Lynch, M.6
-
65
-
-
68049107038
-
Transgenerational epigenetic inheritance: Prevalence, mechanisms, and implications for the study of heredity and evolution
-
Jablonka, E. and Raz, G. (2009) Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. Q. Rev. Biol., 84, 131-176.
-
(2009)
Q. Rev. Biol.
, vol.84
, pp. 131-176
-
-
Jablonka, E.1
Raz, G.2
-
66
-
-
80054837794
-
Transgenerational epigenetic instability is a source of novel methylation variants
-
Schmitz, R.J., Schultz, M.D., Lewsey, M.G., O'Malley, R.C., Urich, M.A., Libiger, O., Schork, N.J. and Ecker, J.R. (2011) Transgenerational epigenetic instability is a source of novel methylation variants. Science, 334, 369-373.
-
(2011)
Science
, vol.334
, pp. 369-373
-
-
Schmitz, R.J.1
Schultz, M.D.2
Lewsey, M.G.3
O'Malley, R.C.4
Urich, M.A.5
Libiger, O.6
Schork, N.J.7
Ecker, J.R.8
-
67
-
-
84906252830
-
-
American Association for Cancer Research, San Francisco, CA, USA
-
Nanney, D.L. (1989), American Association for Cancer Research, Eightieth Annual Meeting, San Francisco, CA, USA.
-
(1989)
Eightieth Annual Meeting
-
-
Nanney, D.L.1
-
69
-
-
84856043672
-
A mathematical theory of communication
-
Shannon, C.E. (1948) A mathematical theory of communication. Bell System Tech. J., 27, 379-423.
-
(1948)
Bell System Tech. J.
, vol.27
, pp. 379-423
-
-
Shannon C., .E.1
-
71
-
-
58749097426
-
Small RNAs in transcriptional gene silencing and genome defence
-
Moazed, D. (2009) Small RNAs in transcriptional gene silencing and genome defence. Nature, 457, 413-420.
-
(2009)
Nature
, vol.457
, pp. 413-420
-
-
Moazed, D.1
-
72
-
-
0030632756
-
Developmental genome reorganization in ciliated protozoa: The transposon link
-
Klobutcher, L.A. and Herrick, G. (1997) Developmental genome reorganization in ciliated protozoa: the transposon link. Prog. Nucleic Acid Res. Mol. Biol., 56, 1-62.
-
(1997)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.56
, pp. 1-62
-
-
Klobutcher, L.A.1
Herrick, G.2
-
73
-
-
0023652375
-
A conserved nucleotide sequence at the sites of developmentally regulated chromosomal breakage in tetrahymena
-
Yao, M.-C., Zheng, K. and Yao, C.-H. A conserved nucleotide sequence at the sites of developmentally regulated chromosomal breakage in tetrahymena. Cell, 48, 779-788.
-
Cell
, vol.48
, pp. 779-788
-
-
Yao, M.-C.1
Zheng, K.2
Yao, C.-H.3
-
74
-
-
58449100499
-
-
CRC Press, Boca Raton, FL, USA
-
Beale, G. and Preer, J.R. (2008) Paramecium: Genetics and Epigenetics. CRC Press, Boca Raton, FL, USA.
-
(2008)
Paramecium: Genetics and Epigenetics
-
-
Beale, G.1
Preer, J.R.2
|