-
1
-
-
33750858684
-
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
-
Aury, J.M., Jaillon, O., Duret, L., Noel, B., Jubin, C., Porcel, B.M., Segurens, B., Daubin, V., Anthouard, V., Aiach, N., et al. 2006. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444: 171-178.
-
(2006)
Nature
, vol.444
, pp. 171-178
-
-
Aury, J.M.1
Jaillon, O.2
Duret, L.3
Noel, B.4
Jubin, C.5
Porcel, B.M.6
Segurens, B.7
Daubin, V.8
Anthouard, V.9
Aiach, N.10
-
2
-
-
0015783675
-
Nuclear differentiation and nucleic acid synthesis in well-fed exconjugants of Paramecium aurelia
-
Berger, J.D. 1973. Nuclear differentiation and nucleic acid synthesis in well-fed exconjugants of Paramecium aurelia. Chromosoma 42: 247-268.
-
(1973)
Chromosoma
, vol.42
, pp. 247-268
-
-
Berger, J.D.1
-
3
-
-
0022517360
-
Autogamy in Paramecium. Cell cycle stage-specific commitment to meiosis
-
Berger, J.D. 1986. Autogamy in Paramecium. Cell cycle stage-specific commitment to meiosis. Exp. Cell Res. 166: 475-485.
-
(1986)
Exp. Cell Res
, vol.166
, pp. 475-485
-
-
Berger, J.D.1
-
4
-
-
0342470423
-
Timing of developmentally programmed excision and circularization of Paramecium internal eliminated sequences
-
Betermier, M., Duharcourt, S., Seitz, H., and Meyer, E. 2000. Timing of developmentally programmed excision and circularization of Paramecium internal eliminated sequences. Mol. Cell. Biol. 20: 1553-1561.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 1553-1561
-
-
Betermier, M.1
Duharcourt, S.2
Seitz, H.3
Meyer, E.4
-
5
-
-
33646923128
-
Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing
-
Buhler, M., Verdel, A., and Moazed, D. 2006. Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing. Cell 125: 873-886.
-
(2006)
Cell
, vol.125
, pp. 873-886
-
-
Buhler, M.1
Verdel, A.2
Moazed, D.3
-
6
-
-
0024434729
-
Molecular basis of surface antigen variation in paramecia
-
Caron, F. and Meyer, E. 1989. Molecular basis of surface antigen variation in paramecia. Annu. Rev. Microbiol. 43: 23-42.
-
(1989)
Annu. Rev. Microbiol
, vol.43
, pp. 23-42
-
-
Caron, F.1
Meyer, E.2
-
7
-
-
0029953126
-
Non-Mendelian, heritable blocks to DNA rearrangement are induced by loading the somatic nucleus of Tetrahymena thermophila with germ line-limited DNA
-
Chalker, D.L. and Yao, M.C. 1996. Non-Mendelian, heritable blocks to DNA rearrangement are induced by loading the somatic nucleus of Tetrahymena thermophila with germ line-limited DNA. Mol. Cell. Biol. 16: 3658-3667.
-
(1996)
Mol. Cell. Biol
, vol.16
, pp. 3658-3667
-
-
Chalker, D.L.1
Yao, M.C.2
-
8
-
-
13744251887
-
Communication between parental and developing genomes during Tetrahymena nuclear differentiation is likely mediated by homologous RNAs
-
Chalker, D.L., Fuller, P., and Yao, M.C. 2005. Communication between parental and developing genomes during Tetrahymena nuclear differentiation is likely mediated by homologous RNAs. Genetics 169: 149-160.
-
(2005)
Genetics
, vol.169
, pp. 149-160
-
-
Chalker, D.L.1
Fuller, P.2
Yao, M.C.3
-
9
-
-
27644525713
-
Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF
-
Cho, D.H., Thienes, C.P., Mahoney, S.E., Analau, E., Filippova, G.N., and Tapscott, S.J. 2005. Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF. Mol. Cell 20: 483-489.
-
(2005)
Mol. Cell
, vol.20
, pp. 483-489
-
-
Cho, D.H.1
Thienes, C.P.2
Mahoney, S.E.3
Analau, E.4
Filippova, G.N.5
Tapscott, S.J.6
-
10
-
-
0029103019
-
Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia
-
Duharcourt, S., Butler, A., and Meyer, E. 1995. Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia. Genes & Dev. 9: 2065-2077.
-
(1995)
Genes & Dev
, vol.9
, pp. 2065-2077
-
-
Duharcourt, S.1
Butler, A.2
Meyer, E.3
-
11
-
-
0031754574
-
Homologydependent maternal inhibition of developmental excision of internal eliminated sequences in Paramecium tetraurelia
-
Duharcourt, S., Keller, A.M., and Meyer, E. 1998. Homologydependent maternal inhibition of developmental excision of internal eliminated sequences in Paramecium tetraurelia. Mol. Cell. Biol. 18: 7075-7085.
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 7075-7085
-
-
Duharcourt, S.1
Keller, A.M.2
Meyer, E.3
-
12
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla, J.M., Valli, A., Todesco, M., Mateos, I., Puga, M.I., Rubio-Somoza, I., Leyva, A., Weigel, D., Garcia, J.A., and Paz-Ares, J. 2007. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat. Genet. 39: 1033-1037.
-
(2007)
Nat. Genet
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
Leyva, A.7
Weigel, D.8
Garcia, J.A.9
Paz-Ares, J.10
-
13
-
-
0035504570
-
Transgene-mediated post-transcriptional gene silencing is inhibited by 3′ non-coding sequences in Paramecium
-
doi: 10.1093/nar/29.21.4387
-
Galvani, A. and Sperling, L. 2001. Transgene-mediated post-transcriptional gene silencing is inhibited by 3′ non-coding sequences in Paramecium. Nucleic Acids Res. 29: 4387-4394. doi: 10.1093/nar/29.21.4387.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4387-4394
-
-
Galvani, A.1
Sperling, L.2
-
14
-
-
0036137143
-
RNA interference by feeding in Paramecium
-
Galvani, A. and Sperling, L. 2002. RNA interference by feeding in Paramecium. Trends Genet. 18: 11-12.
-
(2002)
Trends Genet
, vol.18
, pp. 11-12
-
-
Galvani, A.1
Sperling, L.2
-
15
-
-
4344648254
-
RNA-mediated programming of developmental genome rearrangements in Paramecium tetraurelia
-
Garnier, O., Serrano, V., Duharcourt, S., and Meyer, E. 2004. RNA-mediated programming of developmental genome rearrangements in Paramecium tetraurelia. Mol. Cell. Biol. 24: 7370-7379.
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 7370-7379
-
-
Garnier, O.1
Serrano, V.2
Duharcourt, S.3
Meyer, E.4
-
16
-
-
0019890946
-
Positional control of nuclear differentiation in Paramecium
-
Grandchamp, S. and Beisson, J. 1981. Positional control of nuclear differentiation in Paramecium. Dev. Biol. 81: 336-341.
-
(1981)
Dev. Biol
, vol.81
, pp. 336-341
-
-
Grandchamp, S.1
Beisson, J.2
-
17
-
-
0141752807
-
Processing of double-strand breaks is involved in the precise excision of Paramecium internal eliminated sequences
-
Gratias, A. and Betermier, M. 2003. Processing of double-strand breaks is involved in the precise excision of Paramecium internal eliminated sequences. Mol. Cell. Biol. 23: 7152-7162.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 7152-7162
-
-
Gratias, A.1
Betermier, M.2
-
18
-
-
33845203703
-
Induction of gene silencing by hairpin RNA expression in Tetrahymena thermophila reveals a second small RNA pathway
-
Howard-Till, R.A. and Yao, M.C. 2006. Induction of gene silencing by hairpin RNA expression in Tetrahymena thermophila reveals a second small RNA pathway. Mol. Cell. Biol. 26: 8731-8742.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 8731-8742
-
-
Howard-Till, R.A.1
Yao, M.C.2
-
19
-
-
0029045905
-
Consensus inverted terminal repeat sequence of Paramecium IESs: Resemblance to termini of Tc1-related and Euplotes Tec transposons
-
doi: 10.1093/nar/23.11.2006
-
Klobutcher, L.A. and Herrick, G. 1995. Consensus inverted terminal repeat sequence of Paramecium IESs: Resemblance to termini of Tc1-related and Euplotes Tec transposons. Nucleic Acids Res. 23: 2006-2013. doi: 10.1093/nar/23.11.2006.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 2006-2013
-
-
Klobutcher, L.A.1
Herrick, G.2
-
20
-
-
0030632756
-
Developmental genome reorganization in ciliated protozoa: The transposon link
-
Klobutcher, L.A. and Herrick, G. 1997. Developmental genome reorganization in ciliated protozoa: The transposon link. Prog. Nucleic Acid Res. Mol. Biol. 56: 1-62.
-
(1997)
Prog. Nucleic Acid Res. Mol. Biol
, vol.56
, pp. 1-62
-
-
Klobutcher, L.A.1
Herrick, G.2
-
21
-
-
33845655990
-
The germ line limited M element of Tetrahymena is targeted for elimination from the somatic genome by a homology-dependent mechanism
-
doi: 10.1093/nar/gkl699
-
Kowalczyk, C.A., Anderson, A.M., Arce-Larreta, M., and Chalker, D.L. 2006. The germ line limited M element of Tetrahymena is targeted for elimination from the somatic genome by a homology-dependent mechanism. Nucleic Acids Res. 34: 5778-5789. doi: 10.1093/nar/gkl699.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5778-5789
-
-
Kowalczyk, C.A.1
Anderson, A.M.2
Arce-Larreta, M.3
Chalker, D.L.4
-
22
-
-
0142184930
-
Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia
-
Le Mouel, A., Butler, A., Caron, F., and Meyer, E. 2003. Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia. Eukaryot. Cell 2: 1076-1090.
-
(2003)
Eukaryot. Cell
, vol.2
, pp. 1076-1090
-
-
Le Mouel, A.1
Butler, A.2
Caron, F.3
Meyer, E.4
-
23
-
-
29944442623
-
Two classes of endogenous small RNAs in Tetrahymena thermophila
-
Lee, S.R. and Collins, K. 2006. Two classes of endogenous small RNAs in Tetrahymena thermophila. Genes & Dev. 20: 28-33.
-
(2006)
Genes & Dev
, vol.20
, pp. 28-33
-
-
Lee, S.R.1
Collins, K.2
-
24
-
-
1242319537
-
Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena
-
Liu, Y., Mochizuki, K., and Gorovsky, M.A. 2004. Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena. Proc. Natl. Acad. Sci. 101: 1679-1684.
-
(2004)
Proc. Natl. Acad. Sci
, vol.101
, pp. 1679-1684
-
-
Liu, Y.1
Mochizuki, K.2
Gorovsky, M.A.3
-
25
-
-
34250735582
-
RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena
-
Liu, Y., Taverna, S.D., Muratore, T.L., Shabanowitz, J., Hunt, D.F., and Allis, C.D. 2007. RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena. Genes & Dev. 21: 1530-1545.
-
(2007)
Genes & Dev
, vol.21
, pp. 1530-1545
-
-
Liu, Y.1
Taverna, S.D.2
Muratore, T.L.3
Shabanowitz, J.4
Hunt, D.F.5
Allis, C.D.6
-
26
-
-
0029019520
-
A large multigene family codes for the polypeptides of the crystalline trichocyst matrix in Paramecium
-
Madeddu, L., Gautier, M.C., Vayssie, L., Houari, A., and Sperling, L. 1995. A large multigene family codes for the polypeptides of the crystalline trichocyst matrix in Paramecium. Mol. Biol. Cell 6: 649-659.
-
(1995)
Mol. Biol. Cell
, vol.6
, pp. 649-659
-
-
Madeddu, L.1
Gautier, M.C.2
Vayssie, L.3
Houari, A.4
Sperling, L.5
-
27
-
-
26444477370
-
Germ line transcripts are processed by a Dicer-like protein that is essential for developmentally programmed genome rearrangements of Tetrahymena thermophila
-
Malone, C.D., Anderson, A.M., Motl, J.A., Rexer, C.H., and Chalker, D.L. 2005. Germ line transcripts are processed by a Dicer-like protein that is essential for developmentally programmed genome rearrangements of Tetrahymena thermophila. Mol. Cell. Biol. 25: 9151-9164.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 9151-9164
-
-
Malone, C.D.1
Anderson, A.M.2
Motl, J.A.3
Rexer, C.H.4
Chalker, D.L.5
-
28
-
-
10644237968
-
RNAi-mediated pathways in the nucleus
-
Matzke, M. and Birchler, J. 2005. RNAi-mediated pathways in the nucleus. Nat. Rev. Genet. 6: 24-35.
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 24-35
-
-
Matzke, M.1
Birchler, J.2
-
29
-
-
33846117170
-
Epigenetics of ciliates
-
eds. C.D. Allis et al, pp, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Meyer, E. and Chalker, D.L. 2007. Epigenetics of ciliates. In Epigenetics (eds. C.D. Allis et al.), pp. 127-150. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2007)
Epigenetics
, pp. 127-150
-
-
Meyer, E.1
Chalker, D.L.2
-
30
-
-
0030271899
-
Epigenetic programming of developmental genome rearrangements in ciliates
-
Meyer, E. and Duharcourt, S. 1996. Epigenetic programming of developmental genome rearrangements in ciliates. Cell 87: 9-12.
-
(1996)
Cell
, vol.87
, pp. 9-12
-
-
Meyer, E.1
Duharcourt, S.2
-
31
-
-
0036359622
-
Non-Mendelian inheritance and homology-dependent effects in ciliates
-
Meyer, E. and Garnier, O. 2002. Non-Mendelian inheritance and homology-dependent effects in ciliates. Adv. Genet. 46: 305-337.
-
(2002)
Adv. Genet
, vol.46
, pp. 305-337
-
-
Meyer, E.1
Garnier, O.2
-
32
-
-
0029869354
-
A Mendelian mutation affecting mating-type determination also affects developmental genomic rearrangements in Paramecium tetraurelia
-
Meyer, E. and Keller, A.M. 1996. A Mendelian mutation affecting mating-type determination also affects developmental genomic rearrangements in Paramecium tetraurelia. Genetics 143: 191-202.
-
(1996)
Genetics
, vol.143
, pp. 191-202
-
-
Meyer, E.1
Keller, A.M.2
-
33
-
-
4444383501
-
Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement
-
Mochizuki, K. and Gorovsky, M.A. 2004a. Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement. Genes & Dev. 18: 2068-2073.
-
(2004)
Genes & Dev
, vol.18
, pp. 2068-2073
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
34
-
-
1942535718
-
Small RNAs in genome rearrangement in Tetrahymena
-
Mochizuki, K. and Gorovsky, M.A. 2004b. Small RNAs in genome rearrangement in Tetrahymena. Curr. Opin. Genet. Dev. 14: 181-187.
-
(2004)
Curr. Opin. Genet. Dev
, vol.14
, pp. 181-187
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
35
-
-
11844263265
-
A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase
-
Mochizuki, K. and Gorovsky, M.A. 2005. A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase. Genes & Dev. 19: 77-89.
-
(2005)
Genes & Dev
, vol.19
, pp. 77-89
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
36
-
-
0037145031
-
Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in Tetrahymena
-
Mochizuki, K., Fine, N.A., Fujisawa, T., and Gorovsky, M.A. 2002. Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in Tetrahymena. Cell 110: 689-699.
-
(2002)
Cell
, vol.110
, pp. 689-699
-
-
Mochizuki, K.1
Fine, N.A.2
Fujisawa, T.3
Gorovsky, M.A.4
-
37
-
-
24944572234
-
Nowa1p and Nowa2p: Novel putative RNA binding proteins involved in trans-nuclear crosstalk in Paramecium tetraurelia
-
Nowacki, M., Zagorski-Ostoja, W., and Meyer, E. 2005. Nowa1p and Nowa2p: Novel putative RNA binding proteins involved in trans-nuclear crosstalk in Paramecium tetraurelia. Curr. Biol. 15: 1616-1628.
-
(2005)
Curr. Biol
, vol.15
, pp. 1616-1628
-
-
Nowacki, M.1
Zagorski-Ostoja, W.2
Meyer, E.3
-
38
-
-
38049186458
-
RNA-mediated epigenetic programming of a genome-rearrangement pathway
-
Nowacki, M., Vijayan, V., Zhou, Y., Schotanus, K., Doak, T.G., and Landweber, L.F. 2008. RNA-mediated epigenetic programming of a genome-rearrangement pathway. Nature 451: 153-158.
-
(2008)
Nature
, vol.451
, pp. 153-158
-
-
Nowacki, M.1
Vijayan, V.2
Zhou, Y.3
Schotanus, K.4
Doak, T.G.5
Landweber, L.F.6
-
39
-
-
0004136246
-
-
3rd ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J. and Russell, D.W. 2001. Molecular cloning: A laboratory manual., 3rd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2001)
Molecular cloning: A laboratory manual
-
-
Sambrook, J.1
Russell, D.W.2
-
40
-
-
0030997642
-
Genetic approach to regulated exocytosis using functional complementation in Paramecium: Identification of the ND7 gene required for membrane fusion
-
Skouri, F. and Cohen, J. 1997. Genetic approach to regulated exocytosis using functional complementation in Paramecium: Identification of the ND7 gene required for membrane fusion. Mol. Biol. Cell 8: 1063-1071.
-
(1997)
Mol. Biol. Cell
, vol.8
, pp. 1063-1071
-
-
Skouri, F.1
Cohen, J.2
-
41
-
-
0037145016
-
Methylation of histone h3 at lysine 9 targets programmed DNA elimination in Tetrahymena
-
Taverna, S.D., Coyne, R.S., and Allis, C.D. 2002. Methylation of histone h3 at lysine 9 targets programmed DNA elimination in Tetrahymena. Cell 110: 701-711.
-
(2002)
Cell
, vol.110
, pp. 701-711
-
-
Taverna, S.D.1
Coyne, R.S.2
Allis, C.D.3
-
42
-
-
27244436895
-
RNA-guided DNA deletion in Tetrahymena: An RNAi-based mechanism for programmed genome rearrangements
-
Yao, M.C. and Chao, J.L. 2005. RNA-guided DNA deletion in Tetrahymena: An RNAi-based mechanism for programmed genome rearrangements. Annu. Rev. Genet. 39: 537-559.
-
(2005)
Annu. Rev. Genet
, vol.39
, pp. 537-559
-
-
Yao, M.C.1
Chao, J.L.2
-
43
-
-
0002779490
-
Genomewide rearrangements of DNA in ciliates
-
eds. N.L. Craig et al, ASM Press, Washington, DC
-
Yao, M.C., Duharcourt, S., and Chalker, D.L. 2002. Genomewide rearrangements of DNA in ciliates. In Mobile DNA II (eds. N.L. Craig et al.). ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
-
-
Yao, M.C.1
Duharcourt, S.2
Chalker, D.L.3
-
44
-
-
0038581529
-
Programmed DNA deletion as an RNA-guided system of genome defense
-
Yao, M.C., Fuller, P., and Xi, X. 2003. Programmed DNA deletion as an RNA-guided system of genome defense. Science 300: 1581-1584.
-
(2003)
Science
, vol.300
, pp. 1581-1584
-
-
Yao, M.C.1
Fuller, P.2
Xi, X.3
-
45
-
-
33847037497
-
Noncoding RNAs and gene silencing
-
Zaratiegui, M., Irvine, D., and Martienssen, R. 2007. Noncoding RNAs and gene silencing. Cell 128: 763-776.
-
(2007)
Cell
, vol.128
, pp. 763-776
-
-
Zaratiegui, M.1
Irvine, D.2
Martienssen, R.3
|