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Volumn 95, Issue PART 9, 2014, Pages 1945-1957

Genetic diversity of circulating Saffold viruses in Pakistan and Afghanistan

Author keywords

[No Author keywords available]

Indexed keywords

5' UNTRANSLATED REGION; ADOLESCENT; AFGHANISTAN; AMINO ACID SEQUENCE; ARTICLE; FECES ANALYSIS; FLACCID PARALYSIS; GENETIC DISTANCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HUMAN; MURINE ENCEPHALOMYELITIS VIRUS; PAKISTAN; PHYLOGENY; PICORNAVIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAFFOLD VIRUS; VIRUS GENE;

EID: 84906226380     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.066498-0     Document Type: Article
Times cited : (26)

References (51)
  • 1
    • 45249110442 scopus 로고    scopus 로고
    • New Saffold cardioviruses in 3 children, Canada
    • Abed, Y. & Boivin, G. (2008). New Saffold cardioviruses in 3 children, Canada. Emerg Infect Dis 14, 834-836.
    • (2008) Emerg Infect Dis , vol.14 , pp. 834-836
    • Abed, Y.1    Boivin, G.2
  • 2
    • 84883300219 scopus 로고    scopus 로고
    • Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2013)
    • Adams, M. J., King, A. M. Q. & Carstens, E. B. (2013). Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2013). Arch Virol 158, 2023-2030.
    • (2013) Arch Virol , vol.158 , pp. 2023-2030
    • Adams, M.J.1    King, A.M.Q.2    Carstens, E.B.3
  • 4
    • 66149121345 scopus 로고    scopus 로고
    • Cardioviruses are genetically diverse and cause common enteric infections in South Asian children
    • Blinkova, O., Kapoor, A., Victoria, J., Jones, M., Wolfe, N., Naeem, A., Shaukat, S., Sharif, S., Alam, M. M. & other authors (2009). Cardioviruses are genetically diverse and cause common enteric infections in South Asian children. J Virol 83, 4631-4641.
    • (2009) J Virol , vol.83 , pp. 4631-4641
    • Blinkova, O.1    Kapoor, A.2    Victoria, J.3    Jones, M.4    Wolfe, N.5    Naeem, A.6    Shaukat, S.7    Sharif, S.8    Alam, M.M.9
  • 6
    • 27144467078 scopus 로고    scopus 로고
    • The genetics of the persistent infection and demyelinating disease caused by Theiler's virus
    • Brahic, M., Bureau, J. F. & Michiels, T. (2005). The genetics of the persistent infection and demyelinating disease caused by Theiler's virus. Annu Rev Microbiol 59, 279-298.
    • (2005) Annu Rev Microbiol , vol.59 , pp. 279-298
    • Brahic, M.1    Bureau, J.F.2    Michiels, T.3
  • 7
    • 0007722618 scopus 로고
    • Immunological characterization of Vilyuisk human encephalomyelitis virus
    • Casals, J. (1963). Immunological characterization of Vilyuisk human encephalomyelitis virus. Nature 200, 339-341.
    • (1963) Nature , vol.200 , pp. 339-341
    • Casals, J.1
  • 10
    • 0029558413 scopus 로고
    • Epidemiology and clinical characteristics of acute flaccid paralysis associated with non-polio enterovirus isolation: The experience in the Americas
    • Dietz, V., Andrus, J., Olivé, J. M., Cochi, S. & de Quadros, C. (1995). Epidemiology and clinical characteristics of acute flaccid paralysis associated with non-polio enterovirus isolation: the experience in the Americas. Bull World Health Organ 73, 597-603.
    • (1995) Bull World Health Organ , vol.73 , pp. 597-603
    • Dietz, V.1    Andrus, J.2    Olivé, J.M.3    Cochi, S.4    de Quadros, C.5
  • 14
    • 0029976603 scopus 로고    scopus 로고
    • Using CLUSTAL for multiple sequence alignments
    • Higgins, D. G., Thompson, J. D. & Gibson, T. J. (1996). Using CLUSTAL for multiple sequence alignments. Methods Enzymol 266, 383-402.
    • (1996) Methods Enzymol , vol.266 , pp. 383-402
    • Higgins, D.G.1    Thompson, J.D.2    Gibson, T.J.3
  • 15
    • 84857098134 scopus 로고    scopus 로고
    • Saffold virus, a novel human Cardiovirus with unknown pathogenicity
    • Himeda, T. & Ohara, Y. (2012). Saffold virus, a novel human Cardiovirus with unknown pathogenicity. J Virol 86, 1292-1296.
    • (2012) J Virol , vol.86 , pp. 1292-1296
    • Himeda, T.1    Ohara, Y.2
  • 16
    • 79952350565 scopus 로고    scopus 로고
    • The preparation of an infectious full-length cDNA clone of Saffold virus
    • Himeda, T., Hosomi, T., Asif, N., Shimizu, H., Okuwa, T., Muraki, Y. & Ohara, Y. (2011). The preparation of an infectious full-length cDNA clone of Saffold virus. Virol J 8, 110.
    • (2011) Virol J , vol.8 , pp. 110
    • Himeda, T.1    Hosomi, T.2    Asif, N.3    Shimizu, H.4    Okuwa, T.5    Muraki, Y.6    Ohara, Y.7
  • 17
    • 78549288227 scopus 로고    scopus 로고
    • Sequence and phylogenetic analyses of Saffold cardiovirus from children with exudative tonsillitis in Yamagata, Japan
    • Itagaki, T., Abiko, C., Ikeda, T., Aoki, Y., Seto, J., Mizuta, K., Ahiko, T., Tsukagoshi, H., Nagano, M. & other authors (2010). Sequence and phylogenetic analyses of Saffold cardiovirus from children with exudative tonsillitis in Yamagata, Japan. Scand J Infect Dis 42, 950-952.
    • (2010) Scand J Infect Dis , vol.42 , pp. 950-952
    • Itagaki, T.1    Abiko, C.2    Ikeda, T.3    Aoki, Y.4    Seto, J.5    Mizuta, K.6    Ahiko, T.7    Tsukagoshi, H.8    Nagano, M.9
  • 18
    • 79960636002 scopus 로고    scopus 로고
    • Saffold cardiovirus infection in children associated with respiratory disease and its similarity to coxsackievirus infection
    • Itagaki, T., Abiko, C., Aoki, Y., Ikeda, T., Mizuta, K., Noda, M., Kimura, H. & Matsuzaki, Y. (2011). Saffold cardiovirus infection in children associated with respiratory disease and its similarity to coxsackievirus infection. Pediatr Infect Dis J 30, 680-683.
    • (2011) Pediatr Infect Dis J , vol.30 , pp. 680-683
    • Itagaki, T.1    Abiko, C.2    Aoki, Y.3    Ikeda, T.4    Mizuta, K.5    Noda, M.6    Kimura, H.7    Matsuzaki, Y.8
  • 19
    • 34547630287 scopus 로고    scopus 로고
    • Discovery of a novel human picornavirus in a stool sample from a pediatric patient presenting with fever of unknown origin
    • Jones, M. S., Lukashov, V. V., Ganac, R. D. & Schnurr, D. P. (2007). Discovery of a novel human picornavirus in a stool sample from a pediatric patient presenting with fever of unknown origin. J Clin Microbiol 45, 2144-2150.
    • (2007) J Clin Microbiol , vol.45 , pp. 2144-2150
    • Jones, M.S.1    Lukashov, V.V.2    Ganac, R.D.3    Schnurr, D.P.4
  • 21
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 25
    • 84861323730 scopus 로고    scopus 로고
    • Partitioning the genetic diversity of a virus family: Approach and evaluation through a case study of picornaviruses
    • Lauber, C. & Gorbalenya, A. E. (2012). Partitioning the genetic diversity of a virus family: approach and evaluation through a case study of picornaviruses. J Virol 86, 3890-3904.
    • (2012) J Virol , vol.86 , pp. 3890-3904
    • Lauber, C.1    Gorbalenya, A.E.2
  • 26
    • 56449119821 scopus 로고    scopus 로고
    • Phylogenetic analysis of the species Theilovirus: Emerging murine and human pathogens
    • Liang, Z., Kumar, A. S., Jones, M. S., Knowles, N. J. & Lipton, H. L. (2008). Phylogenetic analysis of the species Theilovirus: emerging murine and human pathogens. J Virol 82, 11545-11554.
    • (2008) J Virol , vol.82 , pp. 11545-11554
    • Liang, Z.1    Kumar, A.S.2    Jones, M.S.3    Knowles, N.J.4    Lipton, H.L.5
  • 27
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole, K. S., Bollinger, R. C., Paranjape, R. S., Gadkari, D., Kulkarni, S. S., Novak, N. G., Ingersoll, R., Sheppard, H. W. & Ray, S. C. (1999). Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73, 152-160.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6    Ingersoll, R.7    Sheppard, H.W.8    Ray, S.C.9
  • 28
    • 18744408450 scopus 로고    scopus 로고
    • Role of recombination in evolution of enteroviruses
    • Lukashev, A. N. (2005). Role of recombination in evolution of enteroviruses. Rev Med Virol 15, 157-167.
    • (2005) Rev Med Virol , vol.15 , pp. 157-167
    • Lukashev, A.N.1
  • 29
    • 77956624160 scopus 로고    scopus 로고
    • Recombination among picornaviruses
    • Lukashev, A. N. (2010). Recombination among picornaviruses. Rev Med Virol 20, 327-337.
    • (2010) Rev Med Virol , vol.20 , pp. 327-337
    • Lukashev, A.N.1
  • 30
    • 28044464255 scopus 로고    scopus 로고
    • Recombination in circulating Human enterovirus B: Independent evolution of structural and nonstructural genome regions
    • Lukashev, A. N., Lashkevich, V. A., Ivanova, O. E., Koroleva, G. A., Hinkkanen, A. E. & Ilonen, J. (2005). Recombination in circulating Human enterovirus B: independent evolution of structural and nonstructural genome regions. J Gen Virol 86, 3281-3290.
    • (2005) J Gen Virol , vol.86 , pp. 3281-3290
    • Lukashev, A.N.1    Lashkevich, V.A.2    Ivanova, O.E.3    Koroleva, G.A.4    Hinkkanen, A.E.5    Ilonen, J.6
  • 31
    • 77956804573 scopus 로고    scopus 로고
    • Analysis of genetic diversity and sites of recombination in human rhinovirus species C
    • McIntyre, C. L., McWilliam Leitch, E. C., Savolainen-Kopra, C., Hovi, T. & Simmonds, P. (2010). Analysis of genetic diversity and sites of recombination in human rhinovirus species C. J Virol 84, 10297-10310.
    • (2010) J Virol , vol.84 , pp. 10297-10310
    • McIntyre, C.L.1    McWilliam Leitch, E.C.2    Savolainen-Kopra, C.3    Hovi, T.4    Simmonds, P.5
  • 34
    • 0033020133 scopus 로고    scopus 로고
    • Molecular evolution of the human enteroviruses: Correlation of serotype with VP1 sequence and application to picornavirus classification
    • Oberste, M. S., Maher, K., Kilpatrick, D. R. & Pallansch, M. A. (1999). Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J Virol 73, 1941-1948.
    • (1999) J Virol , vol.73 , pp. 1941-1948
    • Oberste, M.S.1    Maher, K.2    Kilpatrick, D.R.3    Pallansch, M.A.4
  • 35
    • 0037947763 scopus 로고    scopus 로고
    • Genetic analysis of a Theiler-like virus isolated from rats
    • Ohsawa, K., Watanabe, Y., Miyata, H. & Sato, H. (2003). Genetic analysis of a Theiler-like virus isolated from rats. Comp Med 53, 191-196.
    • (2003) Comp Med , vol.53 , pp. 191-196
    • Ohsawa, K.1    Watanabe, Y.2    Miyata, H.3    Sato, H.4
  • 37
    • 0026808583 scopus 로고
    • Nucleotide sequence identifies Vilyuisk virus as a divergent Theiler's virus
    • Pritchard, A. E., Strom, T. & Lipton, H. L. (1992). Nucleotide sequence identifies Vilyuisk virus as a divergent Theiler's virus. Virology 191, 469-472.
    • (1992) Virology , vol.191 , pp. 469-472
    • Pritchard, A.E.1    Strom, T.2    Lipton, H.L.3
  • 39
    • 84884511046 scopus 로고    scopus 로고
    • Multiple genomic recombination events in the evolution of saffold cardiovirus
    • Ren, L., Xiao, Y., Li, J., Chen, L., Zhang, J., Vernet, G. & Wang, J. (2013). Multiple genomic recombination events in the evolution of saffold cardiovirus. PLoS ONE 8, e74947.
    • (2013) PLoS ONE , vol.8
    • Ren, L.1    Xiao, Y.2    Li, J.3    Chen, L.4    Zhang, J.5    Vernet, G.6    Wang, J.7
  • 40
    • 77957897801 scopus 로고    scopus 로고
    • Pathogenesis of Theiler's murine encephalomyelitis virus-induced disease
    • Roos, R. P. (2010). Pathogenesis of Theiler's murine encephalomyelitis virus-induced disease. Clin Exp Neuroimmunol 1, 70-78.
    • (2010) Clin Exp Neuroimmunol , vol.1 , pp. 70-78
    • Roos, R.P.1
  • 41
    • 0036166646 scopus 로고    scopus 로고
    • Genetic clustering of all 102 human rhinovirus prototype strains: Serotype 87 is close to human enterovirus 70
    • Savolainen, C., Blomqvist, S., Mulders, M. N. & Hovi, T. (2002). Genetic clustering of all 102 human rhinovirus prototype strains: serotype 87 is close to human enterovirus 70. J Gen Virol 83, 333-340.
    • (2002) J Gen Virol , vol.83 , pp. 333-340
    • Savolainen, C.1    Blomqvist, S.2    Mulders, M.N.3    Hovi, T.4
  • 42
    • 77956839508 scopus 로고    scopus 로고
    • Proposals for the classification of human rhinovirus species C into genotypically assigned types
    • Simmonds, P., McIntyre, C., Savolainen-Kopra, C., Tapparel, C., Mackay, I. M. & Hovi, T. (2010). Proposals for the classification of human rhinovirus species C into genotypically assigned types. J Gen Virol 91, 2409-2419.
    • (2010) J Gen Virol , vol.91 , pp. 2409-2419
    • Simmonds, P.1    McIntyre, C.2    Savolainen-Kopra, C.3    Tapparel, C.4    McKay, I.M.5    Hovi, T.6
  • 43
    • 0033854992 scopus 로고    scopus 로고
    • Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used
    • Takahashi, K. & Nei, M. (2000). Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Mol Biol Evol 17, 1251-1258.
    • (2000) Mol Biol Evol , vol.17 , pp. 1251-1258
    • Takahashi, K.1    Nei, M.2
  • 44
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 45
    • 77957747882 scopus 로고    scopus 로고
    • Sequencing and phylogenetic analyses of Saffold cardiovirus (SAFV) genotype 3 isolates from children with upper respiratory infection in Gunma, Japan
    • Tsukagoshi, H., Masuda, Y., Mizutani, T., Mizuta, K., Saitoh, M., Morita, Y., Nishina, A., Kozawa, K., Noda, M. & other authors (2010). Sequencing and phylogenetic analyses of Saffold cardiovirus (SAFV) genotype 3 isolates from children with upper respiratory infection in Gunma, Japan. Jpn J Infect Dis 63, 378-380.
    • (2010) Jpn J Infect Dis , vol.63 , pp. 378-380
    • Tsukagoshi, H.1    Masuda, Y.2    Mizutani, T.3    Mizuta, K.4    Saitoh, M.5    Morita, Y.6    Nishina, A.7    Kozawa, K.8    Noda, M.9
  • 47
    • 84865155908 scopus 로고    scopus 로고
    • A newly designed real-time RT-PCR for SAFV detects SAFV-2 and SAFV-3 in the respiratory tracts of ill children during 2011
    • Wang, C. Y. T., Greer, R. M., Delwart, E., Sloots, T. P. & Mackay, I. M. (2012). A newly designed real-time RT-PCR for SAFV detects SAFV-2 and SAFV-3 in the respiratory tracts of ill children during 2011. J Clin Virol 55, 173-176.
    • (2012) J Clin Virol , vol.55 , pp. 173-176
    • Wang, C.Y.T.1    Greer, R.M.2    Delwart, E.3    Sloots, T.P.4    McKay, I.M.5
  • 48
    • 71549169920 scopus 로고    scopus 로고
    • Screening respiratory samples for detection of human rhinoviruses (HRVs) and enteroviruses: Comprehensive VP4-VP2 typing reveals high incidence and genetic diversity of HRV species C
    • Wisdom, A., McWilliam Leitch, E. C., Gaunt, E., Harvala, H. & Simmonds, P. (2009). Screening respiratory samples for detection of human rhinoviruses (HRVs) and enteroviruses: comprehensive VP4-VP2 typing reveals high incidence and genetic diversity of HRV species C. J Clin Microbiol 47, 3958-3967.
    • (2009) J Clin Microbiol , vol.47 , pp. 3958-3967
    • Wisdom, A.1    McWilliam Leitch, E.C.2    Gaunt, E.3    Harvala, H.4    Simmonds, P.5
  • 49
    • 84860280880 scopus 로고    scopus 로고
    • Tracking progress towards global polio eradication, 2010-2011
    • World Health Organization
    • World Health Organization (2012). Tracking progress towards global polio eradication, 2010-2011. Wkly Epidemiol Rec 87, 153-160.
    • (2012) Wkly Epidemiol Rec , vol.87 , pp. 153-160


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