메뉴 건너뛰기




Volumn 8, Issue 9, 2013, Pages

Multiple Genomic Recombination Events in the Evolution of Saffold Cardiovirus

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; PROTEIN VP1;

EID: 84884511046     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0074947     Document Type: Article
Times cited : (5)

References (41)
  • 1
    • 34547630287 scopus 로고    scopus 로고
    • Discovery of a novel human picornavirus in a stool sample from a pediatric patient presenting with fever of unknown origin
    • Jones MS, Lukashov VV, Ganac RD, Schnurr DP, (2007) Discovery of a novel human picornavirus in a stool sample from a pediatric patient presenting with fever of unknown origin. J Clin Microbiol 45: 2144-2150.
    • (2007) J Clin Microbiol , vol.45 , pp. 2144-2150
    • Jones, M.S.1    Lukashov, V.V.2    Ganac, R.D.3    Schnurr, D.P.4
  • 3
    • 56449119821 scopus 로고    scopus 로고
    • Phylogenetic analysis of the species Theilovirus: emerging murine and human pathogens
    • Liang Z, Kumar AS, Jones MS, Knowles NJ, Lipton HL, (2008) Phylogenetic analysis of the species Theilovirus: emerging murine and human pathogens. J Virol 82: 11545-11554.
    • (2008) J Virol , vol.82 , pp. 11545-11554
    • Liang, Z.1    Kumar, A.S.2    Jones, M.S.3    Knowles, N.J.4    Lipton, H.L.5
  • 4
    • 66149121345 scopus 로고    scopus 로고
    • Cardioviruses are genetically diverse and common enteric infections in south Asian children
    • Blinkova O, Kapoor A, Victoria J, Jones M, Wolfe N, et al. (2009) Cardioviruses are genetically diverse and common enteric infections in south Asian children. J Virol 83: 4631-4641.
    • (2009) J Virol , vol.83 , pp. 4631-4641
    • Blinkova, O.1    Kapoor, A.2    Victoria, J.3    Jones, M.4    Wolfe, N.5
  • 5
    • 78549288227 scopus 로고    scopus 로고
    • Sequence and phylogenetic analyses of Saffold cardiovirus from children with exudative tonsillitis in Yamagata, Japan. Scand
    • Itagaki T, Abiko C, Ikeda T, Aoki Y, Seto J, et al. (2010) Sequence and phylogenetic analyses of Saffold cardiovirus from children with exudative tonsillitis in Yamagata, Japan. Scand. J Infect Dis 42: 950-952.
    • (2010) J Infect Dis , vol.42 , pp. 950-952
    • Itagaki, T.1    Abiko, C.2    Ikeda, T.3    Aoki, Y.4    Seto, J.5
  • 6
    • 45249110442 scopus 로고    scopus 로고
    • New Saffold cardioviruses in 3 children, Canada
    • Abed Y, Boivin G, (2008) New Saffold cardioviruses in 3 children, Canada. Emerg Infect Dis 14: 834-836.
    • (2008) Emerg Infect Dis , vol.14 , pp. 834-836
    • Abed, Y.1    Boivin, G.2
  • 7
    • 50849087373 scopus 로고    scopus 로고
    • Drexler JF, Luna LK, Stöcker A, Almeida PS, Ribeiro TC,et al (2008) Circulation of 3 lineages of a novel Saffold cardiovirus in humans
    • Drexler JF, Luna LK, Stöcker A, Almeida PS, Ribeiro TC,et al (2008) Circulation of 3 lineages of a novel Saffold cardiovirus in humans. Emerg Infect Dis 14: 1398-1405.
    • Emerg Infect Dis , vol.14 , pp. 1398-1405
  • 8
    • 84857098134 scopus 로고    scopus 로고
    • Saffold virus, a novel human Cardiovirus with unknown pathogenicity
    • Himeda T, Ohara Y, (2012) Saffold virus, a novel human Cardiovirus with unknown pathogenicity. J Virol 86: 1292-1296.
    • (2012) J Virol , vol.86 , pp. 1292-1296
    • Himeda, T.1    Ohara, Y.2
  • 9
    • 67249146393 scopus 로고    scopus 로고
    • Saffold virus, a human Theiler's-like cardiovirus, is ubiquitous and causes infection early in life
    • Zoll J, Erkens Hulshof S, Lanke K, Verduyn Lunel F, Melchers WJ, et al. (2009) Saffold virus, a human Theiler's-like cardiovirus, is ubiquitous and causes infection early in life. PLoS Pathog 5: e1000416.
    • (2009) PLoS Pathog , vol.5
    • Zoll, J.1    Erkens Hulshof, S.2    Lanke, K.3    Verduyn Lunel, F.4    Melchers, W.J.5
  • 10
    • 70249145874 scopus 로고    scopus 로고
    • Saffold cardiovirus in children with acute gastroenteritis, Beijing, China
    • Ren L, Gonzalez R, Xiao Y, Xu X, Chen L, et al. (2009) Saffold cardiovirus in children with acute gastroenteritis, Beijing, China. Emerg Infect Dis 15: 1509-1511.
    • (2009) Emerg Infect Dis , vol.15 , pp. 1509-1511
    • Ren, L.1    Gonzalez, R.2    Xiao, Y.3    Xu, X.4    Chen, L.5
  • 11
    • 77954454969 scopus 로고    scopus 로고
    • Saffold cardioviruses of 3 lineages in children with respiratory tract infections, Beijing, China
    • Ren L, Gonzalez R, Xie Z, Xiao Y, Li Y, et al. (2010) Saffold cardioviruses of 3 lineages in children with respiratory tract infections, Beijing, China. Emerg Infect Dis 16: 1158-1161.
    • (2010) Emerg Infect Dis , vol.16 , pp. 1158-1161
    • Ren, L.1    Gonzalez, R.2    Xie, Z.3    Xiao, Y.4    Li, Y.5
  • 13
    • 77952735722 scopus 로고    scopus 로고
    • Genomic features and evolutionary constraints in Saffold-like cardioviruses
    • Drexler JF, Baumgarte S, Luna LK, Stöcker A, Almeida PS, et al. (2010) Genomic features and evolutionary constraints in Saffold-like cardioviruses. J Gen Virol 91: 1418-1427.
    • (2010) J Gen Virol , vol.91 , pp. 1418-1427
    • Drexler, J.F.1    Baumgarte, S.2    Luna, L.K.3    Stöcker, A.4    Almeida, P.S.5
  • 14
    • 80052843152 scopus 로고    scopus 로고
    • Analysis of the genomic homologous recombination in Theilovirus based on complete genomes
    • Sun G, Zhang X, Yi M, Shao S, Zhang W, (2011) Analysis of the genomic homologous recombination in Theilovirus based on complete genomes. Virol J 8: 439.
    • (2011) Virol J , vol.8 , pp. 439
    • Sun, G.1    Zhang, X.2    Yi, M.3    Shao, S.4    Zhang, W.5
  • 15
    • 84862144844 scopus 로고    scopus 로고
    • Towards a new paradigm linking virus molecular evolution and pathogenesis: experimental design and phylodynamic inference
    • Norström MM, Karlsson AC, Salemi M, (2012) Towards a new paradigm linking virus molecular evolution and pathogenesis: experimental design and phylodynamic inference. New Microbiol 35: 101-111.
    • (2012) New Microbiol , vol.35 , pp. 101-111
    • Norström, M.M.1    Karlsson, A.C.2    Salemi, M.3
  • 16
    • 77952508826 scopus 로고    scopus 로고
    • Use of phylogenetics in the molecular epidemiology and evolutionary studies of viral infections
    • Lam TT, Hon CC, Tang JW, (2010) Use of phylogenetics in the molecular epidemiology and evolutionary studies of viral infections. Crit Rev Clin Lab Sci 47: 5-49.
    • (2010) Crit Rev Clin Lab Sci , vol.47 , pp. 5-49
    • Lam, T.T.1    Hon, C.C.2    Tang, J.W.3
  • 17
    • 80052443081 scopus 로고    scopus 로고
    • The leader protein of cardioviruses inhibits stress granule assembly
    • Borghese F, Michiels T, (2011) The leader protein of cardioviruses inhibits stress granule assembly. J Virol 85: 9614-9622.
    • (2011) J Virol , vol.85 , pp. 9614-9622
    • Borghese, F.1    Michiels, T.2
  • 19
    • 0036839078 scopus 로고    scopus 로고
    • Non-AUG-initiated internal translation of the L* protein of Theiler's virus and importance of this protein for viral persistence
    • van Eyll O, Michiels T, (2002) Non-AUG-initiated internal translation of the L* protein of Theiler's virus and importance of this protein for viral persistence. J Virol 76: 10665-10673.
    • (2002) J Virol , vol.76 , pp. 10665-10673
    • van Eyll, O.1    Michiels, T.2
  • 20
    • 0031449337 scopus 로고    scopus 로고
    • Threat to Humans from Virus Infections of Non-human Primates
    • Brown DW (1997) Threat to Humans from Virus Infections of Non-human Primates. Rev Med Virol 7:239- 246.
    • (1997) Rev Med Virol , vol.7 , pp. 239-246
    • Brown, D.W.1
  • 21
    • 34447249033 scopus 로고    scopus 로고
    • Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment
    • Nora T, Charpentier C, Tenaillon O, Hoede C, Clavel F, et al. (2007) Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment. J Virol 81: 7620-7628.
    • (2007) J Virol , vol.81 , pp. 7620-7628
    • Nora, T.1    Charpentier, C.2    Tenaillon, O.3    Hoede, C.4    Clavel, F.5
  • 22
    • 0034979132 scopus 로고    scopus 로고
    • RNA recombination between persisting pestivirus and a vaccine strain: generation of cytopathogenic virus and induction of lethal disease
    • Becher P, Orlich M, Thiel HJ, (2001) RNA recombination between persisting pestivirus and a vaccine strain: generation of cytopathogenic virus and induction of lethal disease. J Virol 75: 6256-6264.
    • (2001) J Virol , vol.75 , pp. 6256-6264
    • Becher, P.1    Orlich, M.2    Thiel, H.J.3
  • 24
    • 0024347652 scopus 로고
    • Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus
    • Khatchikian D, Orlich M, Rott R, (1989) Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus. Nature 340: 156-157.
    • (1989) Nature , vol.340 , pp. 156-157
    • Khatchikian, D.1    Orlich, M.2    Rott, R.3
  • 25
  • 26
    • 33750742813 scopus 로고    scopus 로고
    • Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses
    • Simmonds P, (2006) Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses. J Virol 80: 11124-11140.
    • (2006) J Virol , vol.80 , pp. 11124-11140
    • Simmonds, P.1
  • 27
    • 33751253784 scopus 로고    scopus 로고
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses
    • Heath L, van der Walt E, Varsani A, Martin DP, (2006) Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J Virol 80: 11827-11832.
    • (2006) J Virol , vol.80 , pp. 11827-11832
    • Heath, L.1    van der Walt, E.2    Varsani, A.3    Martin, D.P.4
  • 28
    • 77951072457 scopus 로고    scopus 로고
    • Recombination dynamics of human parechoviruses: investigation of type-specific differences in frequency and epidemiological correlates
    • Calvert J, Chieochansin T, Benschop KS, McWilliam Leitch EC, Drexler JF, et al. (2010) Recombination dynamics of human parechoviruses: investigation of type-specific differences in frequency and epidemiological correlates. J Gen Virol 91: 1229-1238.
    • (2010) J Gen Virol , vol.91 , pp. 1229-1238
    • Calvert, J.1    Chieochansin, T.2    Benschop, K.S.3    McWilliam Leitch, E.C.4    Drexler, J.F.5
  • 29
    • 84861205385 scopus 로고    scopus 로고
    • Genetic diversity of the genus Cosavirus in the family Picornaviridae: a new species, recombination, and 26 new genotypes
    • Kapusinszky B, Phan TG, Kapoor A, Delwart E, (2012) Genetic diversity of the genus Cosavirus in the family Picornaviridae: a new species, recombination, and 26 new genotypes. PLoS One 7: e36685.
    • (2012) PLoS One , vol.7
    • Kapusinszky, B.1    Phan, T.G.2    Kapoor, A.3    Delwart, E.4
  • 30
    • 77949394259 scopus 로고    scopus 로고
    • Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene
    • Tee KK, Lam TT, Chan YF, Bible JM, Kamarulzaman A, et al. (2010) Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene. J Virol 84: 3339-3350.
    • (2010) J Virol , vol.84 , pp. 3339-3350
    • Tee, K.K.1    Lam, T.T.2    Chan, Y.F.3    Bible, J.M.4    Kamarulzaman, A.5
  • 31
    • 33645992762 scopus 로고    scopus 로고
    • Frequency and dynamics of recombination within different species of human enteroviruses
    • Simmonds P, Welch J, (2006) Frequency and dynamics of recombination within different species of human enteroviruses. J Virol 80: 483-493.
    • (2006) J Virol , vol.80 , pp. 483-493
    • Simmonds, P.1    Welch, J.2
  • 32
    • 1542287492 scopus 로고    scopus 로고
    • RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses
    • Oberste MS, Peñaranda S, Pallansch MA, (2004) RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses. J Virol 78: 2948-2955.
    • (2004) J Virol , vol.78 , pp. 2948-2955
    • Oberste, M.S.1    Peñaranda, S.2    Pallansch, M.A.3
  • 33
    • 0034973281 scopus 로고    scopus 로고
    • Genomic features of intertypic recombinant sabin poliovirus strains excreted by primary vaccinees
    • Cuervo NS, Guillot S, Romanenkova N, Combiescu M, Aubert-Combiescu A, et al. (2001) Genomic features of intertypic recombinant sabin poliovirus strains excreted by primary vaccinees. J Virol 75: 5740-5751.
    • (2001) J Virol , vol.75 , pp. 5740-5751
    • Cuervo, N.S.1    Guillot, S.2    Romanenkova, N.3    Combiescu, M.4    Aubert-Combiescu, A.5
  • 34
    • 0036788980 scopus 로고    scopus 로고
    • Evidence of recombination in the capsid-coding region of type A foot-and-mouth disease virus
    • Tosh C, Hemadri D, Sanyal A, (2002) Evidence of recombination in the capsid-coding region of type A foot-and-mouth disease virus. J Gen Virol 83: 2455-2460.
    • (2002) J Gen Virol , vol.83 , pp. 2455-2460
    • Tosh, C.1    Hemadri, D.2    Sanyal, A.3
  • 35
    • 84864139654 scopus 로고    scopus 로고
    • RNA structural elements determine frequency and sites of nonhomologous recombination in an animal plus-strand RNA virus
    • Austermann-Busch S, Becher P, (2012) RNA structural elements determine frequency and sites of nonhomologous recombination in an animal plus-strand RNA virus. J Virol 86: 7393-7402.
    • (2012) J Virol , vol.86 , pp. 7393-7402
    • Austermann-Busch, S.1    Becher, P.2
  • 36
    • 1242274560 scopus 로고    scopus 로고
    • The AU-rich RNA recombination hot spot sequence of Brome mosaic virus is functional in tombusviruses: implications for the mechanism of RNA recombination
    • Shapka N, Nagy PD, (2004) The AU-rich RNA recombination hot spot sequence of Brome mosaic virus is functional in tombusviruses: implications for the mechanism of RNA recombination. J Virol 78: 2288-2300.
    • (2004) J Virol , vol.78 , pp. 2288-2300
    • Shapka, N.1    Nagy, P.D.2
  • 37
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol 24: 1596-1599.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D, Crandall KA, (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 40
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 41
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC. Evol Biol 7: 214.
    • (2007) BMC. Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.