메뉴 건너뛰기




Volumn 17, Issue 8, 2000, Pages 1251-1258

Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used

Author keywords

Maximum likelihood; Maximum parsimony; Minimum evolution; Phylogenetic inference; Topological distance; Tree building algorithms

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER SIMULATION; EVOLUTION; GENETIC DISTANCE; HUMAN; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY;

EID: 0033854992     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026408     Document Type: Article
Times cited : (251)

References (49)
  • 5
    • 85037939650 scopus 로고
    • Atlas of protein sequence and structure. National Biomedical Research Foundation, Silver Springs, Md
    • (1966)
    • Eck, R.V.1    Dayhoff, M.O.2
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • (1985) Evolution , vol.39 , pp. 783-791
  • 9
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 10
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 12
    • 0000207265 scopus 로고
    • Confidence limits on the maximum likelihood estimation of the hominoid tree for mitochondrial DNA sequences
    • (1989) Evolution , vol.43 , pp. 672-677
    • Hasegawa, M.1    Kishino, H.2
  • 14
    • 0032999983 scopus 로고    scopus 로고
    • Detection of seven major evolutionary lineages in Cyanobacteria based on 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains
    • (1999) J. Mol. Evol. , vol.48 , pp. 723-739
    • Honda, D.1    Yokota, A.2    Sugiyama, J.3
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. MUNRO, ed. Mammalian protein metabolism. Academic Press, New York
    • (1969) , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 19
    • 85037924043 scopus 로고
    • MEGA: Molecular evolutionary genetics analysis. Pennsylvania State University, University Park
    • (1993)
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 21
    • 84960569058 scopus 로고
    • The discovery and importance of multiple islands of most-parsimonious trees
    • (1991) Syst. Biol. , vol.40 , pp. 315-328
    • Maddison, D.R.1
  • 24
    • 85037936019 scopus 로고
    • Molecular evolutionary genetics. Columbia University Press, New York
    • (1987)
    • Nei, M.1
  • 25
    • 0001884732 scopus 로고
    • Relative efficiencies of different tree making methods for molecular data
    • M. M. MIYAMOTO and J. L. CRACRAFT, eds. Recent advances in phylogenetic studies of DNA sequences. Oxford University Press, Oxford, England
    • (1991) , pp. 133-147
  • 26
    • 0030458552 scopus 로고    scopus 로고
    • Phylogenetic analysis in molecular evolutionary genetics
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 371-403
  • 27
    • 0008405610 scopus 로고    scopus 로고
    • Molecular evolution and phylogenetics. Oxford University Press, Oxford
    • (2000)
    • Nei, M.1    Kumar, S.2
  • 33
    • 0000329594 scopus 로고
    • Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum-evolution, and neighbor-joining methods of phylogenetic reconstructions in obtaining the correct tree
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 514-525
    • Saitou, N.1    Imanashi, M.2
  • 37
    • 0008355879 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic analysis using parsimony (and other methods).Sinauer, Sunderland, Mass.
    • (1998)
    • Swofford, D.L.1
  • 38
    • 85037944502 scopus 로고
    • PAUP: Phylogenetic analysis using parsimony. Version 3.1. User's manual. Laboratory of Molecular Systematics, Smithsonian Institution, Washington, D.C.
    • (1993)
    • Swofford, D.L.1    Begle, D.P.2
  • 47
    • 0004139886 scopus 로고    scopus 로고
    • Phylogenetic analysis by maximum likelihood (PAML)
    • University of California, Berkeley
    • (1997)
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.