-
1
-
-
52049099430
-
Linkage disequilibrium decay and haplotype block structure in the pig
-
Amaral A.J., Megens H.J., Crooijmans R.P., Heuven H.C., Groenen M.A. Linkage disequilibrium decay and haplotype block structure in the pig. Genetics 2008, 179:569-579.
-
(2008)
Genetics
, vol.179
, pp. 569-579
-
-
Amaral, A.J.1
Megens, H.J.2
Crooijmans, R.P.3
Heuven, H.C.4
Groenen, M.A.5
-
2
-
-
37249066995
-
Linkage disequilibrium in related breeding lines of chickens
-
Andreescu C., Avendano S., Brown S.R., Hassen A., Lamont S.J., Dekkers J.C. Linkage disequilibrium in related breeding lines of chickens. Genetics 2007, 177:2161-2169.
-
(2007)
Genetics
, vol.177
, pp. 2161-2169
-
-
Andreescu, C.1
Avendano, S.2
Brown, S.R.3
Hassen, A.4
Lamont, S.J.5
Dekkers, J.C.6
-
3
-
-
0036208832
-
Patterns of linkage disequilibrium in the human genome
-
Ardlie K.G., Kruglyak L., Seielstad M. Patterns of linkage disequilibrium in the human genome. Nat. Rev. Genet. 2002, 3:299-309.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 299-309
-
-
Ardlie, K.G.1
Kruglyak, L.2
Seielstad, M.3
-
4
-
-
34447324105
-
GenABEL: an R library for genome-wide association analysis
-
Aulchenko Y.S., Ripke S., Isaacs A., van Duijn C.M. GenABEL: an R library for genome-wide association analysis. Bioinformatics 2007, 23:1294-1296.
-
(2007)
Bioinformatics
, vol.23
, pp. 1294-1296
-
-
Aulchenko, Y.S.1
Ripke, S.2
Isaacs, A.3
van Duijn, C.M.4
-
5
-
-
84886436618
-
Detection of quantitative trait loci in Bos indicus and Bos taurus cattle using genome-wide association studies
-
Bolormaa S., Pryce J.E., Kemper K.E., Hayes B.J., Zhang Y.D., Tier B., Barendse W., Reverter A., Goddard M.E. Detection of quantitative trait loci in Bos indicus and Bos taurus cattle using genome-wide association studies. Genet. Sel. Evol. 2013, 45:43.
-
(2013)
Genet. Sel. Evol.
, vol.45
, pp. 43
-
-
Bolormaa, S.1
Pryce, J.E.2
Kemper, K.E.3
Hayes, B.J.4
Zhang, Y.D.5
Tier, B.6
Barendse, W.7
Reverter, A.8
Goddard, M.E.9
-
6
-
-
23844506823
-
Linkage disequilibrium inflates type I error rates in multipoint linkage analysis when parental genotypes are missing
-
Boyles A.L., Scott W.K., Martin E.R., Schmidt S., Li Y.J., Ashley-Koch A., Bass M.P., Schmidt M., Pericak-Vance M.A., Speer M.C., Hauser E.R. Linkage disequilibrium inflates type I error rates in multipoint linkage analysis when parental genotypes are missing. Hum. Hered. 2005, 59:220-227.
-
(2005)
Hum. Hered.
, vol.59
, pp. 220-227
-
-
Boyles, A.L.1
Scott, W.K.2
Martin, E.R.3
Schmidt, S.4
Li, Y.J.5
Ashley-Koch, A.6
Bass, M.P.7
Schmidt, M.8
Pericak-Vance, M.A.9
Speer, M.C.10
Hauser, E.R.11
-
7
-
-
2642583283
-
Mapping complex disease loci in whole-genome association studies
-
Carlson C.S., Eberle M.A., Kruglyak L., Nickerson D.A. Mapping complex disease loci in whole-genome association studies. Nature 2004, 429:446-452.
-
(2004)
Nature
, vol.429
, pp. 446-452
-
-
Carlson, C.S.1
Eberle, M.A.2
Kruglyak, L.3
Nickerson, D.A.4
-
8
-
-
33750444621
-
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
-
Conrad D.F., Jakobsson M., Coop G., Wen X., Wall J.D., Rosenberg N.A., Pritchard J.K. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat. Genet. 2006, 38:1251-1260.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1251-1260
-
-
Conrad, D.F.1
Jakobsson, M.2
Coop, G.3
Wen, X.4
Wall, J.D.5
Rosenberg, N.A.6
Pritchard, J.K.7
-
9
-
-
84862511727
-
Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
-
Erbe M., Hayes B.J., Matukumalli L.K., Goswami S., Bowman P.J., Reich C.M., Mason B.A., Goddard M.E. Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels. J. Dairy Sci. 2012, 95:4114-4129.
-
(2012)
J. Dairy Sci.
, vol.95
, pp. 4114-4129
-
-
Erbe, M.1
Hayes, B.J.2
Matukumalli, L.K.3
Goswami, S.4
Bowman, P.J.5
Reich, C.M.6
Mason, B.A.7
Goddard, M.E.8
-
10
-
-
84876975374
-
Study of whole genome linkage disequilibrium in Nellore cattle
-
Espigolan R., Baldi F., Boligon A.A., Souza F.R.P., Gordo D.G.M., Tonussi R.L., Cardoso D.F., Oliveira H.N., Tonhati H., Sargolzaei M., Schenkel F.S., Carvalheiro R., Ferro J.A., Albuquerque L.G. Study of whole genome linkage disequilibrium in Nellore cattle. BMC Genomics 2013, 14:305.
-
(2013)
BMC Genomics
, vol.14
, pp. 305
-
-
Espigolan, R.1
Baldi, F.2
Boligon, A.A.3
Souza, F.R.P.4
Gordo, D.G.M.5
Tonussi, R.L.6
Cardoso, D.F.7
Oliveira, H.N.8
Tonhati, H.9
Sargolzaei, M.10
Schenkel, F.S.11
Carvalheiro, R.12
Ferro, J.A.13
Albuquerque, L.G.14
-
11
-
-
84880396791
-
Estimates of autozygosity derived from runs of homozygosity: empirical evidence from selected cattle populations
-
Ferencakovic M., Hamzic E., Gredler B., Solberg T.R., Klemetsdal G., Curik I., Solkner J. Estimates of autozygosity derived from runs of homozygosity: empirical evidence from selected cattle populations. J. Anim. Breed. Genet.=Z. Tierz. Zuchtungsbiol. 2013, 130:286-293.
-
(2013)
J. Anim. Breed. Genet.=Z. Tierz. Zuchtungsbiol.
, vol.130
, pp. 286-293
-
-
Ferencakovic, M.1
Hamzic, E.2
Gredler, B.3
Solberg, T.R.4
Klemetsdal, G.5
Curik, I.6
Solkner, J.7
-
12
-
-
77956497351
-
Effective population size of an indigenous Swiss cattle breed estimated from linkage disequilibrium
-
Flury C., Tapio M., Sonstegard T., Drogemuller C., Leeb T., Simianer H., Hanotte O., Rieder S. Effective population size of an indigenous Swiss cattle breed estimated from linkage disequilibrium. J. Anim. Breed. Genet.=Z. Tierz. Zuchtungsbiol. 2010, 127:339-347.
-
(2010)
J. Anim. Breed. Genet.=Z. Tierz. Zuchtungsbiol.
, vol.127
, pp. 339-347
-
-
Flury, C.1
Tapio, M.2
Sonstegard, T.3
Drogemuller, C.4
Leeb, T.5
Simianer, H.6
Hanotte, O.7
Rieder, S.8
-
13
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
Frazer K.A., Ballinger D.G., Cox D.R., Hinds D.A., Stuve L.L., Gibbs R.A., Belmont J.W., Boudreau A., Hardenbol P., Leal S.M., Pasternak S., Wheeler D.A., Willis T.D., Yu F.L., Yang H.M., Zeng C.Q., Gao Y., Hu H.R., Hu W.T., Li C.H., Lin W., Liu S.Q., Pan H., Tang X.L., Wang J., Wang W., Yu J., Zhang B., Zhang Q.R., Zhao H.B., Zhao H., Zhou J., Gabriel S.B., Barry R., Blumenstiel B., Camargo A., Defelice M., Faggart M., Goyette M., Gupta S., Moore J., Nguyen H., Onofrio R.C., Parkin M., Roy J., Stahl E., Winchester E., Ziaugra L., Altshuler D., Shen Y., Yao Z.J., Huang W., Chu X., He Y.G., Jin L., Liu Y.F., Shen Y.Y., Sun W.W., Wang H.F., Wang Y., Wang Y., Xiong X.Y., Xu L., Waye M.M.Y., Tsui S.K.W., Wong J.T.F., Galver L.M., Fan J.B., Gunderson K., Murray S.S., Oliphant A.R., Chee M.S., Montpetit A., Chagnon F., Ferretti V., Leboeuf M., Olivier J.F., Phillips M.S., Roumy S., Sallee C., Verner A., Hudson T.J., Kwok P.Y., Cai D.M., Koboldt D.C., Miller R.D., Pawlikowska L., Taillon-Miller P., Xiao M., Tsui L.C., Mak W., Song Y.Q., Tam P.K.H., Nakamura Y., Kawaguchi T., Kitamoto T., Morizono T., Nagashima A., Ohnishi Y., Sekine A., Tanaka T., Tsunoda T., Deloukas P., Bird C.P., Delgado M., Dermitzakis E.T., Gwilliam R., Hunt S., Morrison J., Powell D., Stranger B.E., Whittaker P., Bentley D.R., Daly M.J., de Bakker P.I.W., Barrett J., Chretien Y.R., Maller J., McCarroll S., Patterson N., Pe'er I., Price A., Purcell S., Richter D.J., Sabeti P., Saxena R., Schaffner S.F., Sham P.C., Varilly P., Altshuler D., Stein L.D., Krishnan L., Smith A.V., Tello-Ruiz M.K., Thorisson G.A., Chakravarti A., Chen P.E., Cutler D.J., Kashuk C.S., Lin S., Abecasis G.R., Guan W.H., Li Y., Munro H.M., Qin Z.H.S., Thomas D.J., McVean G., Auton A., Bottolo L., Cardin N., Eyheramendy S., Freeman C., Marchini J., Myers S., Spencer C., Stephens M., Donnelly P., Cardon L.R., Clarke G., Evans D.M., Morris A.P., Weir B.S., Tsunoda T., Johnson T.A., Mullikin J.C., Sherry S.T., Feolo M., Skol A., Consortium I.H. A second generation human haplotype map of over 3.1 million SNPs. Nature 2007, 449:851-861.
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
Frazer, K.A.1
Ballinger, D.G.2
Cox, D.R.3
Hinds, D.A.4
Stuve, L.L.5
Gibbs, R.A.6
Belmont, J.W.7
Boudreau, A.8
Hardenbol, P.9
Leal, S.M.10
Pasternak, S.11
Wheeler, D.A.12
Willis, T.D.13
Yu, F.L.14
Yang, H.M.15
Zeng, C.Q.16
Gao, Y.17
Hu, H.R.18
Hu, W.T.19
Li, C.H.20
Lin, W.21
Liu, S.Q.22
Pan, H.23
Tang, X.L.24
Wang, J.25
Wang, W.26
Yu, J.27
Zhang, B.28
Zhang, Q.R.29
Zhao, H.B.30
Zhao, H.31
Zhou, J.32
Gabriel, S.B.33
Barry, R.34
Blumenstiel, B.35
Camargo, A.36
Defelice, M.37
Faggart, M.38
Goyette, M.39
Gupta, S.40
Moore, J.41
Nguyen, H.42
Onofrio, R.C.43
Parkin, M.44
Roy, J.45
Stahl, E.46
Winchester, E.47
Ziaugra, L.48
Altshuler, D.49
Shen, Y.50
Yao, Z.J.51
Huang, W.52
Chu, X.53
He, Y.G.54
Jin, L.55
Liu, Y.F.56
Shen, Y.Y.57
Sun, W.W.58
Wang, H.F.59
Wang, Y.60
Wang, Y.61
Xiong, X.Y.62
Xu, L.63
Waye, M.M.Y.64
Tsui, S.K.W.65
Wong, J.T.F.66
Galver, L.M.67
Fan, J.B.68
Gunderson, K.69
Murray, S.S.70
Oliphant, A.R.71
Chee, M.S.72
Montpetit, A.73
Chagnon, F.74
Ferretti, V.75
Leboeuf, M.76
Olivier, J.F.77
Phillips, M.S.78
Roumy, S.79
Sallee, C.80
Verner, A.81
Hudson, T.J.82
Kwok, P.Y.83
Cai, D.M.84
Koboldt, D.C.85
Miller, R.D.86
Pawlikowska, L.87
Taillon-Miller, P.88
Xiao, M.89
Tsui, L.C.90
Mak, W.91
Song, Y.Q.92
Tam, P.K.H.93
Nakamura, Y.94
Kawaguchi, T.95
Kitamoto, T.96
Morizono, T.97
Nagashima, A.98
Ohnishi, Y.99
more..
-
14
-
-
33746414369
-
Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism
-
Freeman A.R., Hoggart C.J., Hanotte O., Bradley D.G. Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism. Genetics 2006, 173:1503-1510.
-
(2006)
Genetics
, vol.173
, pp. 1503-1510
-
-
Freeman, A.R.1
Hoggart, C.J.2
Hanotte, O.3
Bradley, D.G.4
-
15
-
-
35548984721
-
Genetic and haplotypic structure in 14 European and African cattle breeds
-
Gautier M., Faraut T., Moazami-Goudarzi K., Navratil V., Foglio M., Grohs C., Boland A., Garnier J.G., Boichard D., Lathrop G.M., Gut I.G., Eggen A. Genetic and haplotypic structure in 14 European and African cattle breeds. Genetics 2007, 177:1059-1070.
-
(2007)
Genetics
, vol.177
, pp. 1059-1070
-
-
Gautier, M.1
Faraut, T.2
Moazami-Goudarzi, K.3
Navratil, V.4
Foglio, M.5
Grohs, C.6
Boland, A.7
Garnier, J.G.8
Boichard, D.9
Lathrop, G.M.10
Gut, I.G.11
Eggen, A.12
-
16
-
-
0034791032
-
Islands of linkage disequilibrium
-
Goldstein D.B. Islands of linkage disequilibrium. Nat. Genet. 2001, 29:109-111.
-
(2001)
Nat. Genet.
, vol.29
, pp. 109-111
-
-
Goldstein, D.B.1
-
17
-
-
0242500969
-
Novel multilocus measure of linkage disequilibrium to estimate past effective population size
-
Hayes B.J., Visscher P.M., McPartlan H.C., Goddard M.E. Novel multilocus measure of linkage disequilibrium to estimate past effective population size. Genome Res. 2003, 13:635-643.
-
(2003)
Genome Res.
, vol.13
, pp. 635-643
-
-
Hayes, B.J.1
Visscher, P.M.2
McPartlan, H.C.3
Goddard, M.E.4
-
18
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
Hill W.G., Robertson A. Linkage disequilibrium in finite populations. Theor. Appl. Genet. 1968, 38:226-231.
-
(1968)
Theor. Appl. Genet.
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
19
-
-
77953938644
-
Evaluating differences in linkage disequilibrium between populations
-
Hrafnkelsson B., Helgason A., Jonsson G.F., Gudbjartsson D.F., Jonsson T., Thorvaldsson S., Stefansson H., Steinthorsdottir V., Vidarsdottir N., Middleton D., Petersen H.S., Martinez C., Snaedal J., Jonsson P.V., Bjornsson S., Gulcher J.R., Stefansson K. Evaluating differences in linkage disequilibrium between populations. Ann. Hum. Genet. 2010, 74:233-247.
-
(2010)
Ann. Hum. Genet.
, vol.74
, pp. 233-247
-
-
Hrafnkelsson, B.1
Helgason, A.2
Jonsson, G.F.3
Gudbjartsson, D.F.4
Jonsson, T.5
Thorvaldsson, S.6
Stefansson, H.7
Steinthorsdottir, V.8
Vidarsdottir, N.9
Middleton, D.10
Petersen, H.S.11
Martinez, C.12
Snaedal, J.13
Jonsson, P.V.14
Bjornsson, S.15
Gulcher, J.R.16
Stefansson, K.17
-
20
-
-
84905589592
-
-
Illumina Inc, 2011. BovineSNP50 Genotyping BeadChip datasheet.
-
Illumina Inc, 2011. BovineSNP50 Genotyping BeadChip datasheet. http://www.illumina.com/Documents/products/datasheets/datasheet_bovine_snp5O.pdf. http://www.illumina.com/Documents/products/datasheets/datasheet_bovine_snp5O.pdf.
-
-
-
-
21
-
-
84905586578
-
-
Illumina Inc, 2012. BovineHD BeadChip datasheet.
-
Illumina Inc, 2012. BovineHD BeadChip datasheet. http://www.illumina.com/documents/products/datasheets/datasheet_bovineHD.pdf. http://www.illumina.com/documents/products/datasheets/datasheet_bovineHD.pdf.
-
-
-
-
22
-
-
84881523870
-
Comparison of molecular breeding values based on within- and across-breed training in beef cattle
-
Kachman S.D., Spangler M.L., Bennett G.L., Hanford K.J., Kuehn L.A., Snelling W.M., Thallman R.M., Saatchi M., Garrick D.J., Schnabel R.D., Taylor J.F., Pollak E.J. Comparison of molecular breeding values based on within- and across-breed training in beef cattle. Genet Sel. Evol. 2013, 45:30.
-
(2013)
Genet Sel. Evol.
, vol.45
, pp. 30
-
-
Kachman, S.D.1
Spangler, M.L.2
Bennett, G.L.3
Hanford, K.J.4
Kuehn, L.A.5
Snelling, W.M.6
Thallman, R.M.7
Saatchi, M.8
Garrick, D.J.9
Schnabel, R.D.10
Taylor, J.F.11
Pollak, E.J.12
-
23
-
-
12144290432
-
The impact of SNP density on fine-scale patterns of linkage disequilibrium
-
Ke X., Hunt S., Tapper W., Lawrence R., Stavrides G., Ghori J., Whittaker P., Collins A., Morris A.P., Bentley D., Cardon L.R., Deloukas P. The impact of SNP density on fine-scale patterns of linkage disequilibrium. Hum. Mol. Genet. 2004, 13:577-588.
-
(2004)
Hum. Mol. Genet.
, vol.13
, pp. 577-588
-
-
Ke, X.1
Hunt, S.2
Tapper, W.3
Lawrence, R.4
Stavrides, G.5
Ghori, J.6
Whittaker, P.7
Collins, A.8
Morris, A.P.9
Bentley, D.10
Cardon, L.R.11
Deloukas, P.12
-
24
-
-
43849094455
-
Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel
-
Khatkar M.S., Nicholas F.W., Collins A.R., Zenger K.R., Cavanagh J.A., Barris W., Schnabel R.D., Taylor J.F., Raadsma H.W. Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel. BMC Genomics 2008, 9:187.
-
(2008)
BMC Genomics
, vol.9
, pp. 187
-
-
Khatkar, M.S.1
Nicholas, F.W.2
Collins, A.R.3
Zenger, K.R.4
Cavanagh, J.A.5
Barris, W.6
Schnabel, R.D.7
Taylor, J.F.8
Raadsma, H.W.9
-
25
-
-
34250759931
-
A primary assembly of a bovine haplotype block map based on a 15,036-single-nucleotide polymorphism panel genotyped in holstein-friesian cattle
-
Khatkar M.S., Zenger K.R., Hobbs M., Hawken R.J., Cavanagh J.A., Barris W., McClintock A.E., McClintock S., Thomson P.C., Tier B., Nicholas F.W., Raadsma H.W. A primary assembly of a bovine haplotype block map based on a 15,036-single-nucleotide polymorphism panel genotyped in holstein-friesian cattle. Genetics 2007, 176:763-772.
-
(2007)
Genetics
, vol.176
, pp. 763-772
-
-
Khatkar, M.S.1
Zenger, K.R.2
Hobbs, M.3
Hawken, R.J.4
Cavanagh, J.A.5
Barris, W.6
McClintock, A.E.7
McClintock, S.8
Thomson, P.C.9
Tier, B.10
Nicholas, F.W.11
Raadsma, H.W.12
-
26
-
-
75949112012
-
Genomic prediction of simulated multibreed and purebred performance using observed fifty thousand single nucleotide polymorphism genotypes
-
Kizilkaya K., Fernando R.L., Garrick D.J. Genomic prediction of simulated multibreed and purebred performance using observed fifty thousand single nucleotide polymorphism genotypes. J. Anim. Sci. 2010, 88:544-551.
-
(2010)
J. Anim. Sci.
, vol.88
, pp. 544-551
-
-
Kizilkaya, K.1
Fernando, R.L.2
Garrick, D.J.3
-
27
-
-
0033039497
-
Prospects for whole-genome linkage disequilibrium mapping of common disease genes
-
Kruglyak L. Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat. Genet. 1999, 22:139-144.
-
(1999)
Nat. Genet.
, vol.22
, pp. 139-144
-
-
Kruglyak, L.1
-
28
-
-
0002907949
-
The interaction of selection and linkage. I. General considerations; heterotic models
-
Lewontin R.C. The interaction of selection and linkage. I. General considerations; heterotic models. Genetics 1964, 49:49-67.
-
(1964)
Genetics
, vol.49
, pp. 49-67
-
-
Lewontin, R.C.1
-
29
-
-
84883500872
-
Patterns of linkage disequilibrium of LRRK2 across different races: implications for genetic association studies
-
Li H., Teo Y.Y., Tan E.K. Patterns of linkage disequilibrium of LRRK2 across different races: implications for genetic association studies. PloS One 2013, 8:e75041.
-
(2013)
PloS One
, vol.8
-
-
Li, H.1
Teo, Y.Y.2
Tan, E.K.3
-
30
-
-
0347361674
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
-
Li N., Stephens M. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 2003, 165:2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
31
-
-
62449120574
-
Extensive long-range and nonsyntenic linkage disequilibrium in livestock populations: deconstruction of a conundrum
-
Lipkin E., Straus K., Stein R.T., Bagnato A., Schiavini F., Fontanesi L., Russo V., Medugorac I., Foerster M., Solkner J., Dolezal M., Medrano J.F., Friedmann A., Soller M. Extensive long-range and nonsyntenic linkage disequilibrium in livestock populations: deconstruction of a conundrum. Genetics 2009, 181:691-699.
-
(2009)
Genetics
, vol.181
, pp. 691-699
-
-
Lipkin, E.1
Straus, K.2
Stein, R.T.3
Bagnato, A.4
Schiavini, F.5
Fontanesi, L.6
Russo, V.7
Medugorac, I.8
Foerster, M.9
Solkner, J.10
Dolezal, M.11
Medrano, J.F.12
Friedmann, A.13
Soller, M.14
-
32
-
-
84876043849
-
Linkage disequilibrium in Angus, Charolais, and crossbred beef cattle
-
Lu D., Sargolzaei M., Kelly M., Li C., Vander Voort G., Wang Z., Plastow G., Moore S., Miller S.P. Linkage disequilibrium in Angus, Charolais, and crossbred beef cattle. Frontiers Genet. 2012, 3:152.
-
(2012)
Frontiers Genet.
, vol.3
, pp. 152
-
-
Lu, D.1
Sargolzaei, M.2
Kelly, M.3
Li, C.4
Vander Voort, G.5
Wang, Z.6
Plastow, G.7
Moore, S.8
Miller, S.P.9
-
33
-
-
67651107321
-
Development and characterization of a high density SNP genotyping assay for cattle
-
Matukumalli L.K., Lawley C.T., Schnabel R.D., Taylor J.F., Allan M.F., Heaton M.P., O'Connell J., Moore S.S., Smith T.P., Sonstegard T.S., Van Tassell C.P. Development and characterization of a high density SNP genotyping assay for cattle. PloS One 2009, 4:e5350.
-
(2009)
PloS One
, vol.4
-
-
Matukumalli, L.K.1
Lawley, C.T.2
Schnabel, R.D.3
Taylor, J.F.4
Allan, M.F.5
Heaton, M.P.6
O'Connell, J.7
Moore, S.S.8
Smith, T.P.9
Sonstegard, T.S.10
Van Tassell, C.P.11
-
34
-
-
79957956814
-
Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs
-
McEvoy B.P., Powell J.E., Goddard M.E., Visscher P.M. Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs. Genome Res. 2011, 21:821-829.
-
(2011)
Genome Res.
, vol.21
, pp. 821-829
-
-
McEvoy, B.P.1
Powell, J.E.2
Goddard, M.E.3
Visscher, P.M.4
-
35
-
-
37049007617
-
Whole genome linkage disequilibrium maps in cattle
-
McKay S.D., Schnabel R.D., Murdoch B.M., Matukumalli L.K., Aerts J., Coppieters W., Crews D., Dias Neto E., Gill C.A., Gao C., Mannen H., Stothard P., Wang Z., Van Tassell C.P., Williams J.L., Taylor J.F., Moore S.S. Whole genome linkage disequilibrium maps in cattle. BMC Genet. 2007, 8:74.
-
(2007)
BMC Genet.
, vol.8
, pp. 74
-
-
McKay, S.D.1
Schnabel, R.D.2
Murdoch, B.M.3
Matukumalli, L.K.4
Aerts, J.5
Coppieters, W.6
Crews, D.7
Dias Neto, E.8
Gill, C.A.9
Gao, C.10
Mannen, H.11
Stothard, P.12
Wang, Z.13
Van Tassell, C.P.14
Williams, J.L.15
Taylor, J.F.16
Moore, S.S.17
-
36
-
-
44649147148
-
An assessment of population structure in eight breeds of cattle using a whole genome SNP panel
-
McKay S.D., Schnabel R.D., Murdoch B.M., Matukumalli L.K., Aerts J., Coppieters W., Crews D., Dias Neto E., Gill C.A., Gao C., Mannen H., Wang Z., Van Tassell C.P., Williams J.L., Taylor J.F., Moore S.S. An assessment of population structure in eight breeds of cattle using a whole genome SNP panel. BMC Genet. 2008, 9:37.
-
(2008)
BMC Genet.
, vol.9
, pp. 37
-
-
McKay, S.D.1
Schnabel, R.D.2
Murdoch, B.M.3
Matukumalli, L.K.4
Aerts, J.5
Coppieters, W.6
Crews, D.7
Dias Neto, E.8
Gill, C.A.9
Gao, C.10
Mannen, H.11
Wang, Z.12
Van Tassell, C.P.13
Williams, J.L.14
Taylor, J.F.15
Moore, S.S.16
-
37
-
-
54949086378
-
Linkage disequilibrium compared between five populations of domestic sheep
-
Meadows J.R., Chan E.K., Kijas J.W. Linkage disequilibrium compared between five populations of domestic sheep. BMC Genet. 2008, 9:61.
-
(2008)
BMC Genet.
, vol.9
, pp. 61
-
-
Meadows, J.R.1
Chan, E.K.2
Kijas, J.W.3
-
38
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen T.H.E., Hayes B.J., Goddard M.E. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157:1819-1829.
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
39
-
-
77956460950
-
Cattle demographic history modelled from autosomal sequence variation
-
Murray C., Huerta-Sanchez E., Casey F., Bradley D.G. Cattle demographic history modelled from autosomal sequence variation. Philos. Trans. R. Soc. Lond. Ser. B Biol. Sci. 2010, 365:2531-2539.
-
(2010)
Philos. Trans. R. Soc. Lond. Ser. B Biol. Sci.
, vol.365
, pp. 2531-2539
-
-
Murray, C.1
Huerta-Sanchez, E.2
Casey, F.3
Bradley, D.G.4
-
40
-
-
84874891647
-
Imputation of high-density genotypes in the Fleckvieh cattle population
-
Pausch H., Aigner B., Emmerling R., Edel C., Gotz K.U., Fries R. Imputation of high-density genotypes in the Fleckvieh cattle population. Genet. Sel. Evol. 2013, 45:3.
-
(2013)
Genet. Sel. Evol.
, vol.45
, pp. 3
-
-
Pausch, H.1
Aigner, B.2
Emmerling, R.3
Edel, C.4
Gotz, K.U.5
Fries, R.6
-
41
-
-
84905572298
-
-
PLINK v1.07. Purcell, S.: PLINK: Whole Genome Association Analysis Toolset.
-
PLINK v1.07. Purcell, S.: PLINK: Whole Genome Association Analysis Toolset. http://pngu.mgh.harvard.edu/purcell/plink/, 2009. http://pngu.mgh.harvard.edu/purcell/plink/.
-
(2009)
-
-
-
42
-
-
0034977045
-
Linkage disequilibrium in humans: models and data
-
Pritchard J.K., Przeworski M. Linkage disequilibrium in humans: models and data. Am. J. Hum. Genet. 2001, 69:1-14.
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 1-14
-
-
Pritchard, J.K.1
Przeworski, M.2
-
43
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
Purcell S., Neale B., Todd-Brown K., Thomas L., Ferreira M.A., Bender D., Maller J., Sklar P., de Bakker P.I., Daly M.J., Sham P.C. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 2007, 81:559-575.
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.5
Bender, D.6
Maller, J.7
Sklar, P.8
de Bakker, P.I.9
Daly, M.J.10
Sham, P.C.11
-
44
-
-
84864954190
-
Runs of homozygosity and population history in cattle
-
Purfield D.C., Berry D.P., McParland S., Bradley D.G. Runs of homozygosity and population history in cattle. BMC Genet. 2012, 13:70.
-
(2012)
BMC Genet.
, vol.13
, pp. 70
-
-
Purfield, D.C.1
Berry, D.P.2
McParland, S.3
Bradley, D.G.4
-
45
-
-
77954580306
-
The pattern of linkage disequilibrium in German Holstein cattle
-
Qanbari S., Pimentel E.C., Tetens J., Thaller G., Lichtner P., Sharifi A.R., Simianer H. The pattern of linkage disequilibrium in German Holstein cattle. Anim. Genet. 2010, 41:346-356.
-
(2010)
Anim. Genet.
, vol.41
, pp. 346-356
-
-
Qanbari, S.1
Pimentel, E.C.2
Tetens, J.3
Thaller, G.4
Lichtner, P.5
Sharifi, A.R.6
Simianer, H.7
-
46
-
-
84905593523
-
-
R. Core Team. R: A Language and Environment for Statistical Computing.
-
R. Core Team, 2012. R: A Language and Environment for Statistical Computing. http://www.r-project.org/.
-
(2012)
-
-
-
47
-
-
84892742497
-
Multibreed genome wide association can improve precision of mapping causative variants underlying milk production in dairy cattle
-
Raven L.A., Cocks B.G., Hayes B.J. Multibreed genome wide association can improve precision of mapping causative variants underlying milk production in dairy cattle. BMC Genomics 2014, 15:62.
-
(2014)
BMC Genomics
, vol.15
, pp. 62
-
-
Raven, L.A.1
Cocks, B.G.2
Hayes, B.J.3
-
48
-
-
0035837267
-
Linkage disequilibrium in the human genome
-
Reich D.E., Cargill M., Bolk S., Ireland J., Sabeti P.C., Richter D.J., Lavery T., Kouyoumjian R., Farhadian S.F., Ward R., Lander E.S. Linkage disequilibrium in the human genome. Nature 2001, 411:199-204.
-
(2001)
Nature
, vol.411
, pp. 199-204
-
-
Reich, D.E.1
Cargill, M.2
Bolk, S.3
Ireland, J.4
Sabeti, P.C.5
Richter, D.J.6
Lavery, T.7
Kouyoumjian, R.8
Farhadian, S.F.9
Ward, R.10
Lander, E.S.11
-
49
-
-
44349160682
-
Extent of linkage disequilibrium in Holstein cattle in North America
-
Sargolzaei M., Schenkel F.S., Jansen G.B., Schaeffer L.R. Extent of linkage disequilibrium in Holstein cattle in North America. J. Dairy Sci. 2008, 91:2106-2117.
-
(2008)
J. Dairy Sci.
, vol.91
, pp. 2106-2117
-
-
Sargolzaei, M.1
Schenkel, F.S.2
Jansen, G.B.3
Schaeffer, L.R.4
-
50
-
-
0032187275
-
Genetic variability of populations and similarity of subpopulations in Austrian cattle breeds determined by analysis of pedigrees
-
Sölkner J., Filipcic L., Hampshire N. Genetic variability of populations and similarity of subpopulations in Austrian cattle breeds determined by analysis of pedigrees. Anim. Sci. 1998, 67:249-256.
-
(1998)
Anim. Sci.
, vol.67
, pp. 249-256
-
-
Sölkner, J.1
Filipcic, L.2
Hampshire, N.3
-
51
-
-
84864072672
-
Comparison of genomic predictions using medium-density (approximately 54,000) and high-density (approximately 777,000) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations
-
Su G., Brondum R.F., Ma P., Guldbrandtsen B., Aamand G.P., Lund M.S. Comparison of genomic predictions using medium-density (approximately 54,000) and high-density (approximately 777,000) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations. J. Dairy Sci. 2012, 95:4657-4665.
-
(2012)
J. Dairy Sci.
, vol.95
, pp. 4657-4665
-
-
Su, G.1
Brondum, R.F.2
Ma, P.3
Guldbrandtsen, B.4
Aamand, G.P.5
Lund, M.S.6
-
52
-
-
34147165220
-
Recent human effective population size estimated from linkage disequilibrium
-
Tenesa A., Navarro P., Hayes B.J., Duffy D.L., Clarke G.M., Goddard M.E., Visscher P.M. Recent human effective population size estimated from linkage disequilibrium. Genome Res. 2007, 17:520-526.
-
(2007)
Genome Res.
, vol.17
, pp. 520-526
-
-
Tenesa, A.1
Navarro, P.2
Hayes, B.J.3
Duffy, D.L.4
Clarke, G.M.5
Goddard, M.E.6
Visscher, P.M.7
-
53
-
-
63449142078
-
Power consequences of linkage disequilibrium variation between populations
-
Teo Y.Y., Small K.S., Fry A.E., Wu Y., Kwiatkowski D.P., Clark T.G. Power consequences of linkage disequilibrium variation between populations. Genet. Epidemiol. 2009, 33:128-135.
-
(2009)
Genet. Epidemiol.
, vol.33
, pp. 128-135
-
-
Teo, Y.Y.1
Small, K.S.2
Fry, A.E.3
Wu, Y.4
Kwiatkowski, D.P.5
Clark, T.G.6
-
54
-
-
0031946381
-
Mapping genes through the use of linkage disequilibrium generated by genetic drift: 'drift mapping' in small populations with no demographic expansion
-
Terwilliger J.D., Zollner S., Laan M., Paabo S. Mapping genes through the use of linkage disequilibrium generated by genetic drift: 'drift mapping' in small populations with no demographic expansion. Hum. Hered. 1998, 48:138-154.
-
(1998)
Hum. Hered.
, vol.48
, pp. 138-154
-
-
Terwilliger, J.D.1
Zollner, S.2
Laan, M.3
Paabo, S.4
-
55
-
-
65449132092
-
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds
-
The Bovine HapMap Consortium
-
Gibbs R.A., Taylor J.F., Van Tassell C.P., Barendse W., Eversole K.A., Gill C.A., Green R.D., Hamernik D.L., Kappes S.M., Lien S., Matukumalli L.K., McEwan J.C., Nazareth L.V., Schnabel R.D., Weinstock G.M., Wheeler D.A., Ajmone-Marsan P., Boettcher P.J., Caetano A.R., Garcia J.F., Hanotte O., Mariani P., Skow L.C., Sonstegard T.S., Williams J.L., Diallo B., Hailemariam L., Martinez M.L., Morris C.A., Silva L.O., Spelman R.J., Mulatu W., Zhao K., Abbey C.A., Agaba M., Araujo F.R., Bunch R.J., Burton J., Gorni C., Olivier H., Harrison B.E., Luff B., Machado M.A., Mwakaya J., Plastow G., Sim W., Smith T., Thomas M.B., Valentini A., Williams P., Womack J., Woolliams J.A., Liu Y., Qin X., Worley K.C., Gao C., Jiang H., Moore S.S., Ren Y., Song X.Z., Bustamante C.D., Hernandez R.D., Muzny D.M., Patil S., San Lucas A., Fu Q., Kent M.P., Vega R., Matukumalli A., McWilliam S., Sclep G., Bryc K., Choi J., Gao H., Grefenstette J.J., Murdoch B., Stella A., Villa-Angulo R., Wright M., Aerts J., Jann O., Negrini R., Goddard M.E., Hayes B.J., Bradley D.G., Barbosa da Silva M., Lau L.P., Liu G.E., Lynn D.J., Panzitta F., Dodds K.G. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science 2009, 324:528-532. The Bovine HapMap Consortium.
-
(2009)
Science
, vol.324
, pp. 528-532
-
-
Gibbs, R.A.1
Taylor, J.F.2
Van Tassell, C.P.3
Barendse, W.4
Eversole, K.A.5
Gill, C.A.6
Green, R.D.7
Hamernik, D.L.8
Kappes, S.M.9
Lien, S.10
Matukumalli, L.K.11
McEwan, J.C.12
Nazareth, L.V.13
Schnabel, R.D.14
Weinstock, G.M.15
Wheeler, D.A.16
Ajmone-Marsan, P.17
Boettcher, P.J.18
Caetano, A.R.19
Garcia, J.F.20
Hanotte, O.21
Mariani, P.22
Skow, L.C.23
Sonstegard, T.S.24
Williams, J.L.25
Diallo, B.26
Hailemariam, L.27
Martinez, M.L.28
Morris, C.A.29
Silva, L.O.30
Spelman, R.J.31
Mulatu, W.32
Zhao, K.33
Abbey, C.A.34
Agaba, M.35
Araujo, F.R.36
Bunch, R.J.37
Burton, J.38
Gorni, C.39
Olivier, H.40
Harrison, B.E.41
Luff, B.42
Machado, M.A.43
Mwakaya, J.44
Plastow, G.45
Sim, W.46
Smith, T.47
Thomas, M.B.48
Valentini, A.49
Williams, P.50
Womack, J.51
Woolliams, J.A.52
Liu, Y.53
Qin, X.54
Worley, K.C.55
Gao, C.56
Jiang, H.57
Moore, S.S.58
Ren, Y.59
Song, X.Z.60
Bustamante, C.D.61
Hernandez, R.D.62
Muzny, D.M.63
Patil, S.64
San Lucas, A.65
Fu, Q.66
Kent, M.P.67
Vega, R.68
Matukumalli, A.69
McWilliam, S.70
Sclep, G.71
Bryc, K.72
Choi, J.73
Gao, H.74
Grefenstette, J.J.75
Murdoch, B.76
Stella, A.77
Villa-Angulo, R.78
Wright, M.79
Aerts, J.80
Jann, O.81
Negrini, R.82
Goddard, M.E.83
Hayes, B.J.84
Bradley, D.G.85
Barbosa da Silva, M.86
Lau, L.P.87
Liu, G.E.88
Lynn, D.J.89
Panzitta, F.90
Dodds, K.G.91
more..
-
56
-
-
34249818758
-
The extent of linkage disequilibrium in a large cattle population of western Africa and its consequences for association studies
-
Thevenon S., Dayo G.K., Sylla S., Sidibe I., Berthier D., Legros H., Boichard D., Eggen A., Gautier M. The extent of linkage disequilibrium in a large cattle population of western Africa and its consequences for association studies. Anim. Genet. 2007, 38:277-286.
-
(2007)
Anim. Genet.
, vol.38
, pp. 277-286
-
-
Thevenon, S.1
Dayo, G.K.2
Sylla, S.3
Sidibe, I.4
Berthier, D.5
Legros, H.6
Boichard, D.7
Eggen, A.8
Gautier, M.9
-
57
-
-
79955587949
-
Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds
-
Uimari P., Tapio M. Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds. J. Anim. Sci. 2011, 89:609-614.
-
(2011)
J. Anim. Sci.
, vol.89
, pp. 609-614
-
-
Uimari, P.1
Tapio, M.2
-
58
-
-
84871609280
-
Genomic imputation and evaluation using high-density Holstein genotypes
-
VanRaden P.M., Null D.J., Sargolzaei M., Wiggans G.R., Tooker M.E., Cole J.B., Sonstegard T.S., Connor E.E., Winters M., van Kaam J.B.C.H.M., Valentini A., Van Doormaal B.J., Faust M.A., Doak G.A. Genomic imputation and evaluation using high-density Holstein genotypes. J. Dairy Sci. 2013, 96:668-678.
-
(2013)
J. Dairy Sci.
, vol.96
, pp. 668-678
-
-
VanRaden, P.M.1
Null, D.J.2
Sargolzaei, M.3
Wiggans, G.R.4
Tooker, M.E.5
Cole, J.B.6
Sonstegard, T.S.7
Connor, E.E.8
Winters, M.9
van Kaam, J.B.C.H.M.10
Valentini, A.11
Van Doormaal, B.J.12
Faust, M.A.13
Doak, G.A.14
-
59
-
-
65649097560
-
High-resolution haplotype block structure in the cattle genome
-
Villa-Angulo R., Matukumalli L.K., Gill C.A., Choi J., Van Tassell C.P., Grefenstette J.J. High-resolution haplotype block structure in the cattle genome. BMC Genet. 2009, 10:19.
-
(2009)
BMC Genet.
, vol.10
, pp. 19
-
-
Villa-Angulo, R.1
Matukumalli, L.K.2
Gill, C.A.3
Choi, J.4
Van Tassell, C.P.5
Grefenstette, J.J.6
-
60
-
-
84882711405
-
Accuracy of genomic breeding values in multibreed beef cattle populations derived from deregressed breeding values and phenotypes
-
Weber K.L., Thallman R.M., Keele J.W., Snelling W.M., Bennett G.L., Smith T.P.L., McDaneld T.G., Allan M.F., Van Eenennaam A.L., Kuehn L.A. Accuracy of genomic breeding values in multibreed beef cattle populations derived from deregressed breeding values and phenotypes. J. Anim. Sci. 2012, 90:4177-4190.
-
(2012)
J. Anim. Sci.
, vol.90
, pp. 4177-4190
-
-
Weber, K.L.1
Thallman, R.M.2
Keele, J.W.3
Snelling, W.M.4
Bennett, G.L.5
Smith, T.P.L.6
McDaneld, T.G.7
Allan, M.F.8
Van Eenennaam, A.L.9
Kuehn, L.A.10
-
61
-
-
52049096371
-
Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle
-
de Roos A.P., Hayes B.J., Spelman R.J., Goddard M.E. Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle. Genetics 2008, 179:1503-1512.
-
(2008)
Genetics
, vol.179
, pp. 1503-1512
-
-
de Roos, A.P.1
Hayes, B.J.2
Spelman, R.J.3
Goddard, M.E.4
|