The evolutionary rate dynamically tracks changes in HIV-1 epidemics: Application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data

Epidemics

Volumn 1, Issue 4, 2009, Pages 230-239

  Maljkovic Berry, Irina ^a,b,c   Athreya, Gayathri ^a   Kothari, Moulik ^a   Daniels, Marcus ^a   Bruno, William J ^a   Korber, Bette ^a   Kuiken, Carla ^a   Ribeiro, Ruy M ^a   Leitner, Thomas ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b CENTER FOR NONLINEAR STUDIES   (United States)

^c SWEDISH INSTITUTE FOR INFECTIOUS DISEASE CONTROL   (Sweden)

Author keywords

Molecular epidemiology; Phylogeny; TreeRate; Viral evolution

Indexed keywords

ARTICLE; EPIDEMIC; ETHIOPIA; EVOLUTIONARY RATE; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN IMMUNODEFICIENCY VIRUS 1; MATHEMATICAL MODEL; NONHUMAN; PHYLOGENETIC TREE; PRIORITY JOURNAL; SIMULATION;

ANTIRETROVIRAL THERAPY, HIGHLY ACTIVE; COMPUTER SIMULATION; ETHIOPIA; EUROPE; EVOLUTION, MOLECULAR; HIV INFECTIONS; HIV-1; HUMANS; LONGITUDINAL STUDIES; MONTE CARLO METHOD; PHYLOGENY; UNITED STATES;

EID: 77649338614     PISSN: 17554365     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.epidem.2009.10.003     Document Type: Article

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