-
1
-
-
10044266575
-
Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli
-
Keren, I., Shah, D., Spoering, A., Kaldalu, N., and Lewis, K. (2004) Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli. J. Bacteriol. 186, 8172-8180
-
(2004)
J. Bacteriol.
, vol.186
, pp. 8172-8180
-
-
Keren, I.1
Shah, D.2
Spoering, A.3
Kaldalu, N.4
Lewis, K.5
-
2
-
-
15744396567
-
Lessons from DNA microarray analysis: The gene expression profile of biofilms
-
Lazazzera, B. A. (2005) Lessons from DNA microarray analysis: the gene expression profile of biofilms. Curr. Opin. Microbiol. 8, 222-227
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 222-227
-
-
Lazazzera, B.A.1
-
3
-
-
77955628762
-
Persister cells
-
Lewis, K. (2010) Persister cells. Annu. Rev. Microbiol. 64, 357-372
-
(2010)
Annu. Rev. Microbiol.
, vol.64
, pp. 357-372
-
-
Lewis, K.1
-
4
-
-
74249084586
-
Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: Implications for pathogenesis, stress responses, and evolution
-
Ramage, H. R., Connolly, L. E., and Cox, J. S. (2009) Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: implications for pathogenesis, stress responses, and evolution. PLoS Genet. 5, e1000767
-
(2009)
PLoS Genet.
, vol.5
-
-
Ramage, H.R.1
Connolly, L.E.2
Cox, J.S.3
-
5
-
-
80054759036
-
Regulation of growth and death in Escherichia coli by toxin-antitoxin systems
-
Yamaguchi, Y., and Inouye, M. (2011) Regulation of growth and death in Escherichia coli by toxin-antitoxin systems. Nat. Rev. Microbiol. 9, 779-790
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 779-790
-
-
Yamaguchi, Y.1
Inouye, M.2
-
7
-
-
80052548515
-
Genetic regulation of the yefM-yoeB toxin-antitoxin locus of Streptococcus pneumoniae
-
Chan, W. T., Nieto, C., Harikrishna, J. A., Khoo, S. K., Othman, R. Y., Espinosa, M., and Yeo, C. C. (2011) Genetic regulation of the yefM-yoeB toxin-antitoxin locus of Streptococcus pneumoniae. J. Bacteriol. 193, 4612-4625
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4612-4625
-
-
Chan, W.T.1
Nieto, C.2
Harikrishna, J.A.3
Khoo, S.K.4
Othman, R.Y.5
Espinosa, M.6
Yeo, C.C.7
-
8
-
-
0031816179
-
The Escherichia coli relBE genes belong to a new toxin-antitoxin gene family
-
Gotfredsen, M., and Gerdes, K. (1998) The Escherichia coli relBE genes belong to a new toxin-antitoxin gene family. Mol. Microbiol. 29, 1065-1076
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 1065-1076
-
-
Gotfredsen, M.1
Gerdes, K.2
-
9
-
-
84863243970
-
Antitoxin DinJ influences the general stress response through transcript stabilizer CspE
-
Hu, Y., Benedik, M. J., and Wood, T. K. (2012) Antitoxin DinJ influences the general stress response through transcript stabilizer CspE. Environ. Microbiol. 14, 669-679
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 669-679
-
-
Hu, Y.1
Benedik, M.J.2
Wood, T.K.3
-
10
-
-
33846680128
-
Toxin-antitoxin regulation: Bimodal interaction of YefM-YoeB with paired DNA palindromes exerts transcriptional autorepression
-
Kedzierska, B., Lian, L. Y., and Hayes, F. (2007) Toxin-antitoxin regulation: bimodal interaction of YefM-YoeB with paired DNA palindromes exerts transcriptional autorepression. Nucleic Acids Res. 35, 325-339
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 325-339
-
-
Kedzierska, B.1
Lian, L.Y.2
Hayes, F.3
-
11
-
-
77953551929
-
Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD
-
Kim, Y., Wang, X., Zhang, X. S., Grigoriu, S., Page, R., Peti, W., and Wood, T. K. (2010) Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD. Environ. Microbiol. 12, 1105-1121
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1105-1121
-
-
Kim, Y.1
Wang, X.2
Zhang, X.S.3
Grigoriu, S.4
Page, R.5
Peti, W.6
Wood, T.K.7
-
12
-
-
0028076771
-
Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence
-
Markiewicz, P., Kleina, L. G., Cruz, C., Ehret, S., and Miller, J. H. (1994) Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence. J. Mol. Biol. 240, 421-433
-
(1994)
J. Mol. Biol.
, vol.240
, pp. 421-433
-
-
Markiewicz, P.1
Kleina, L.G.2
Cruz, C.3
Ehret, S.4
Miller, J.H.5
-
13
-
-
79956074557
-
Antitoxin MqsA helps mediate the bacterial general stress response
-
Wang, X., Kim, Y., Hong, S. H., Ma, Q., Brown, B. L., Pu, M., Tarone, A. M., Benedik, M. J., Peti, W., Page, R., and Wood, T. K. (2011) Antitoxin MqsA helps mediate the bacterial general stress response. Nat. Chem. Biol. 7, 359-366
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 359-366
-
-
Wang, X.1
Kim, Y.2
Hong, S.H.3
Ma, Q.4
Brown, B.L.5
Pu, M.6
Tarone, A.M.7
Benedik, M.J.8
Peti, W.9
Page, R.10
Wood, T.K.11
-
14
-
-
77949367813
-
A conserved mode of protein recognition and binding in a ParD-ParE toxin-antitoxin complex
-
Dalton, K. M., and Crosson, S. (2010) A conserved mode of protein recognition and binding in a ParD-ParE toxin-antitoxin complex. Biochemistry 49, 2205-2215
-
(2010)
Biochemistry
, vol.49
, pp. 2205-2215
-
-
Dalton, K.M.1
Crosson, S.2
-
15
-
-
0037338682
-
Axe-Txe, a broad-spectrum proteic toxinantitoxin system specified by a multidrug-resistant, clinical isolate of Enterococcus faecium
-
Grady, R., and Hayes, F. (2003) Axe-Txe, a broad-spectrum proteic toxinantitoxin system specified by a multidrug-resistant, clinical isolate of Enterococcus faecium. Mol. Microbiol. 47, 1419-1432
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 1419-1432
-
-
Grady, R.1
Hayes, F.2
-
16
-
-
67649794729
-
Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site
-
Li, G. Y., Zhang, Y., Inouye, M., and Ikura, M. (2009) Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site. J. Biol. Chem. 284, 14628-14636
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 14628-14636
-
-
Li, G.Y.1
Zhang, Y.2
Inouye, M.3
Ikura, M.4
-
17
-
-
0028230286
-
The parDE operon of the broad-host-range plasmid RK2 specifies growth inhibition associated with plasmid loss
-
Roberts, R. C., Ström, A. R., and Helinski, D. R. (1994) The parDE operon of the broad-host-range plasmid RK2 specifies growth inhibition associated with plasmid loss. J. Mol. Biol. 237, 35-51
-
(1994)
J. Mol. Biol.
, vol.237
, pp. 35-51
-
-
Roberts, R.C.1
Ström, A.R.2
Helinski, D.R.3
-
18
-
-
1642483754
-
Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: Involvement of the yefM-yoeB toxin-antitoxin system
-
Christensen, S. K., Maenhaut-Michel, G., Mine, N., Gottesman, S., Gerdes, K., and Van Melderen, L. (2004) Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: involvement of the yefM-yoeB toxin-antitoxin system. Mol. Microbiol. 51, 1705-1717
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 1705-1717
-
-
Christensen, S.K.1
Maenhaut-Michel, G.2
Mine, N.3
Gottesman, S.4
Gerdes, K.5
Van Melderen, L.6
-
19
-
-
84879148198
-
Cleavage of the antitoxin of the parD toxinantitoxin system is determined by the ClpAP protease and is modulated by the relative ratio of the toxin and the antitoxin
-
Diago-Navarro, E., Hernández-Arriaga, A. M., Kubik, S., Konieczny, I., and Díaz-Orejas, R. (2013) Cleavage of the antitoxin of the parD toxinantitoxin system is determined by the ClpAP protease and is modulated by the relative ratio of the toxin and the antitoxin. Plasmid 70, 78-85
-
(2013)
Plasmid
, vol.70
, pp. 78-85
-
-
Diago-Navarro, E.1
Hernández-Arriaga, A.M.2
Kubik, S.3
Konieczny, I.4
Díaz-Orejas, R.5
-
20
-
-
0028985596
-
Addiction protein Phd of plasmid prophage P1 is a substrate of the ClpXP serine protease of Escherichia coli
-
Lehnherr, H., and Yarmolinsky, M. B. (1995) Addiction protein Phd of plasmid prophage P1 is a substrate of the ClpXP serine protease of Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 92, 3274-3277
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 3274-3277
-
-
Lehnherr, H.1
Yarmolinsky, M.B.2
-
21
-
-
0028222452
-
Lon-dependent proteolysis of CcdA is the key control for activation of CcdB in plasmidfree segregant bacteria
-
Van Melderen, L., Bernard, P., and Couturier, M. (1994) Lon-dependent proteolysis of CcdA is the key control for activation of CcdB in plasmidfree segregant bacteria. Mol. Microbiol. 11, 1151-1157
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 1151-1157
-
-
Van Melderen, L.1
Bernard, P.2
Couturier, M.3
-
22
-
-
17844370503
-
Prokaryotic toxin-antitoxin stress response loci
-
Gerdes, K., Christensen, S. K., and Løbner-Olesen, A. (2005) Prokaryotic toxin-antitoxin stress response loci. Nat. Rev. Microbiol. 3, 371-382
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 371-382
-
-
Gerdes, K.1
Christensen, S.K.2
Løbner-Olesen, A.3
-
23
-
-
0035807805
-
RelE, a global inhibitor of translation, is activated during nutritional stress
-
Christensen, S. K., Mikkelsen, M., Pedersen, K., and Gerdes, K. (2001) RelE, a global inhibitor of translation, is activated during nutritional stress. Proc. Natl. Acad. Sci. U. S. A. 98, 14328-14333
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 14328-14333
-
-
Christensen, S.K.1
Mikkelsen, M.2
Pedersen, K.3
Gerdes, K.4
-
24
-
-
0036067108
-
Rapid induction and reversal of a bacteriostatic condition by controlled expression of toxins and antitoxins
-
Pedersen, K., Christensen, S. K., and Gerdes, K. (2002) Rapid induction and reversal of a bacteriostatic condition by controlled expression of toxins and antitoxins. Mol. Microbiol. 45, 501-510
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 501-510
-
-
Pedersen, K.1
Christensen, S.K.2
Gerdes, K.3
-
25
-
-
47749089764
-
Messenger RNA interferase RelE controls relBE transcription by conditional cooperativity
-
Overgaard, M., Borch, J., Jørgensen, M. G., and Gerdes, K. (2008) Messenger RNA interferase RelE controls relBE transcription by conditional cooperativity. Mol. Microbiol. 69, 841-857
-
(2008)
Mol. Microbiol.
, vol.69
, pp. 841-857
-
-
Overgaard, M.1
Borch, J.2
Jørgensen, M.G.3
Gerdes, K.4
-
26
-
-
77954256912
-
Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity
-
Garcia-Pino, A., Balasubramanian, S., Wyns, L., Gazit, E., De Greve, H., Magnuson, R. D., Charlier, D., van Nuland, N. A., and Loris, R. (2010) Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity. Cell 142, 101-111
-
(2010)
Cell
, vol.142
, pp. 101-111
-
-
Garcia-Pino, A.1
Balasubramanian, S.2
Wyns, L.3
Gazit, E.4
De Greve, H.5
Magnuson, R.D.6
Charlier, D.7
Van Nuland, N.A.8
Loris, R.9
-
27
-
-
0031785682
-
Corepression of the P1 addiction operon by Phd and Doc
-
Magnuson, R., and Yarmolinsky, M. B. (1998) Corepression of the P1 addiction operon by Phd and Doc. J. Bacteriol. 180, 6342-6351
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6342-6351
-
-
Magnuson, R.1
Yarmolinsky, M.B.2
-
28
-
-
0029862847
-
Plasmid RK2 toxin protein ParE: Purification and interaction with the ParD antitoxin protein
-
Johnson, E. P., Strom, A. R., and Helinski, D. R. (1996) Plasmid RK2 toxin protein ParE: purification and interaction with the ParD antitoxin protein. J. Bacteriol. 178, 1420-1429
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1420-1429
-
-
Johnson, E.P.1
Strom, A.R.2
Helinski, D.R.3
-
29
-
-
0034939217
-
The ratio between CcdA and CcdB modulates the transcriptional repression of the ccd poison-antidote system
-
Afif, H., Allali, N., Couturier, M., and Van Melderen, L. (2001) The ratio between CcdA and CcdB modulates the transcriptional repression of the ccd poison-antidote system. Mol. Microbiol. 41, 73-82
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 73-82
-
-
Afif, H.1
Allali, N.2
Couturier, M.3
Van Melderen, L.4
-
30
-
-
84857963742
-
Characterization of Escherichia coli dinJ-yafQ toxin-antitoxin system using insights from mutagenesis data
-
Armalyte, J., Jurenaite, M., Beinoraviciūte, G., Teiserskas, J., and Suziedeliene, E. (2012) Characterization of Escherichia coli dinJ-yafQ toxin-antitoxin system using insights from mutagenesis data. J. Bacteriol. 194, 1523-1532
-
(2012)
J. Bacteriol.
, vol.194
, pp. 1523-1532
-
-
Armalyte, J.1
Jurenaite, M.2
Beinoraviciute, G.3
Teiserskas, J.4
Suziedeliene, E.5
-
31
-
-
60649093164
-
Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage
-
Prysak, M. H., Mozdzierz, C. J., Cook, A. M., Zhu, L., Zhang, Y., Inouye, M., and Woychik, N. A. (2009) Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage. Mol. Microbiol. 71, 1071-1087
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 1071-1087
-
-
Prysak, M.H.1
Mozdzierz, C.J.2
Cook, A.M.3
Zhu, L.4
Zhang, Y.5
Inouye, M.6
Woychik, N.A.7
-
32
-
-
84877081375
-
Structural overview of toxinantitoxin systems in infectious bacteria: A target for developing antimicrobial agents
-
Park, S. J., Son, W. S., and Lee, B. J. (2013) Structural overview of toxinantitoxin systems in infectious bacteria: a target for developing antimicrobial agents. Biochim. Biophys. Acta 1834, 1155-1167
-
(2013)
Biochim. Biophys. Acta
, vol.1834
, pp. 1155-1167
-
-
Park, S.J.1
Son, W.S.2
Lee, B.J.3
-
33
-
-
0031045585
-
Preparation of selenomethionyl proteins for phase determination
-
Doublié, S. (1997) Preparation of selenomethionyl proteins for phase determination. Methods Enzymol. 276, 523-530
-
(1997)
Methods Enzymol.
, vol.276
, pp. 523-530
-
-
Doublié, S.1
-
34
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J. Mol. Biol. 229, 105-124
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
35
-
-
0031059866
-
-
Carter, C. W., Jr., and Sweet, R. M., eds, Academic Press, New York
-
Otwinowski, Z., and Minor, W. (1997) in Methods in Enzymology (Carter, C. W., Jr., and Sweet, R. M., eds) pp. 307-326, Academic Press, New York
-
(1997)
Methods in Enzymology
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
36
-
-
77950793231
-
Experimental phasing with SHELXC/D/E: Combining chain tracing with density modification
-
Sheldrick, G. M. (2010) Experimental phasing with SHELXC/D/E: combining chain tracing with density modification. Acta Crystallogr. D Biol. Crystallogr. 66, 479-485
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 479-485
-
-
Sheldrick, G.M.1
-
37
-
-
4644366388
-
HKL2MAP: A graphical user interface for phasing with the SHELX programs
-
Pape, T., and Schneider, T. R. (2004) HKL2MAP: a graphical user interface for phasing with the SHELX programs. J. Appl. Crystallogr. 37, 843-844
-
(2004)
J. Appl. Crystallogr.
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
38
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
39
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
40
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
42
-
-
0025370615
-
Construction of broad-hostrange plasmid vectors for easy visible selection and analysis of promoters
-
Farinha, M. A., and Kropinski, A. M. (1990) Construction of broad-hostrange plasmid vectors for easy visible selection and analysis of promoters. J. Bacteriol 172, 3496-3499
-
(1990)
J. Bacteriol
, vol.172
, pp. 3496-3499
-
-
Farinha, M.A.1
Kropinski, A.M.2
-
43
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller, J. H. (1972) Experiments in Molecular Genetics, pp. 352-355, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1972)
Experiments in Molecular Genetics
, pp. 352-355
-
-
Miller, J.H.1
-
44
-
-
33846011436
-
Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helixhelix motifs
-
Mattison, K., Wilbur, J. S., So, M., and Brennan, R. G. (2006) Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helixhelix motifs. J. Biol. Chem. 281, 37942-37951
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 37942-37951
-
-
Mattison, K.1
Wilbur, J.S.2
So, M.3
Brennan, R.G.4
-
45
-
-
46649098392
-
Structural basis of the transcriptional regulation of the proline utilization regulon by multifunctional PutA
-
Zhou, Y., Larson, J. D., Bottoms, C. A., Arturo, E. C., Henzl, M. T., Jenkins, J. L., Nix, J. C., Becker, D. F., and Tanner, J. J. (2008) Structural basis of the transcriptional regulation of the proline utilization regulon by multifunctional PutA. J. Mol. Biol. 381, 174-188
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 174-188
-
-
Zhou, Y.1
Larson, J.D.2
Bottoms, C.A.3
Arturo, E.C.4
Henzl, M.T.5
Jenkins, J.L.6
Nix, J.C.7
Becker, D.F.8
Tanner, J.J.9
-
46
-
-
66549119395
-
Advances and pitfalls of protein structural alignment
-
Hasegawa, H., and Holm, L. (2009) Advances and pitfalls of protein structural alignment. Curr. Opin. Struct. Biol. 19, 341-348
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 341-348
-
-
Hasegawa, H.1
Holm, L.2
-
47
-
-
0028177303
-
DNA recognition by β-sheets in the Arc repressor-operator crystal structure
-
Raumann, B. E., Rould, M. A., Pabo, C. O., and Sauer, R. T. (1994) DNA recognition by β-sheets in the Arc repressor-operator crystal structure. Nature 367, 754-757
-
(1994)
Nature
, vol.367
, pp. 754-757
-
-
Raumann, B.E.1
Rould, M.A.2
Pabo, C.O.3
Sauer, R.T.4
-
48
-
-
0028154121
-
Crystal structure of RNase T1 with 3'-guanylic acid and guanosine
-
Zegers, I., Haikal, A. F., Palmer, R., and Wyns, L. (1994) Crystal structure of RNase T1 with 3'-guanylic acid and guanosine. J. Biol. Chem. 269, 127-133
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 127-133
-
-
Zegers, I.1
Haikal, A.F.2
Palmer, R.3
Wyns, L.4
-
49
-
-
0000446384
-
Determination and restrained least-squares refinement of the structures of ribonuclease Sa and its complex with 3'-guanylic acid at 1.8Åresolution
-
Sevcik, J., Dodson, E. J., and Dodson, G. G. (1991) Determination and restrained least-squares refinement of the structures of ribonuclease Sa and its complex with 3'-guanylic acid at 1.8Åresolution. Acta Crystallogr. Sect. B Struct. Sci. 47, 240-253
-
(1991)
Acta Crystallogr. Sect. B Struct. Sci.
, vol.47
, pp. 240-253
-
-
Sevcik, J.1
Dodson, E.J.2
Dodson, G.G.3
-
50
-
-
84867404222
-
The crystal structure of the intact E coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity
-
Bøggild, A., Sofos, N., Andersen, K. R., Feddersen, A., Easter, A. D., Passmore, L. A., and Brodersen, D. E. (2012) The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity. Structure 20, 1641-1648
-
(2012)
Structure
, vol.20
, pp. 1641-1648
-
-
Bøggild, A.1
Sofos, N.2
Andersen, K.R.3
Feddersen, A.4
Easter, A.D.5
Passmore, L.A.6
Brodersen, D.E.7
-
51
-
-
23744463273
-
Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin
-
Kamada, K., and Hanaoka, F. (2005) Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin. Mol. Cell 19, 497-509
-
(2005)
Mol. Cell
, vol.19
, pp. 497-509
-
-
Kamada, K.1
Hanaoka, F.2
-
52
-
-
74549170423
-
Three-dimensional structure of the MqsR: MqsA complex: A novel TA pair comprised of a toxin homologous to RelE and an antitoxin with unique properties
-
Brown, B. L., Grigoriu, S., Kim, Y., Arruda, J. M., Davenport, A., Wood, T. K., Peti, W., and Page, R. (2009) Three-dimensional structure of the MqsR: MqsA complex: a novel TA pair comprised of a toxin homologous to RelE and an antitoxin with unique properties. PLoS Pathog. 5, e1000706
-
(2009)
PLoS Pathog.
, vol.5
-
-
Brown, B.L.1
Grigoriu, S.2
Kim, Y.3
Arruda, J.M.4
Davenport, A.5
Wood, T.K.6
Peti, W.7
Page, R.8
-
53
-
-
77954296666
-
A new bioinformatics analysis tools framework at EMBL-EBI
-
Goujon, M., McWilliam, H., Li, W., Valentin, F., Squizzato, S., Paern, J., and Lopez, R. (2010) A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Res. 38, W695-W699
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Goujon, M.1
McWilliam, H.2
Li, W.3
Valentin, F.4
Squizzato, S.5
Paern, J.6
Lopez, R.7
-
54
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L., and Rosenström, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Holm, L.1
Rosenström, P.2
-
55
-
-
18744409067
-
Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
-
Takagi, H., Kakuta, Y., Okada, T., Yao, M., Tanaka, I., and Kimura, M. (2005) Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects. Nat. Struct. Mol. Biol. 12, 327-331
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 327-331
-
-
Takagi, H.1
Kakuta, Y.2
Okada, T.3
Yao, M.4
Tanaka, I.5
Kimura, M.6
-
56
-
-
84891938260
-
2-HigB toxin-antitoxin complex
-
2-HigB toxin-antitoxin complex. J. Biol. Chem. 289, 1060-1070
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 1060-1070
-
-
Schureck, M.A.1
Maehigashi, T.2
Miles, S.J.3
Marquez, J.4
Cho, S.E.5
Erdman, R.6
Dunham, C.M.7
-
57
-
-
34548046005
-
Ribbon-helix-helix transcription factors: Variations on a theme
-
Schreiter, E. R., and Drennan, C. L. (2007) Ribbon-helix-helix transcription factors: variations on a theme. Nat. Rev. Microbiol. 5, 710-720
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 710-720
-
-
Schreiter, E.R.1
Drennan, C.L.2
-
58
-
-
0029564595
-
Are buried salt bridges important for protein stability and conformational specificity?
-
Waldburger, C. D., Schildbach, J. F., and Sauer, R. T. (1995) Are buried salt bridges important for protein stability and conformational specificity? Nat. Struct. Biol. 2, 122-128
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 122-128
-
-
Waldburger, C.D.1
Schildbach, J.F.2
Sauer, R.T.3
-
59
-
-
84889257673
-
Bacterial toxin RelE: A highly efficient ribonuclease with exquisite substrate specificity using atypical catalytic residues
-
Griffin, M. A., Davis, J. H., and Strobel, S. A. (2013) Bacterial toxin RelE: a highly efficient ribonuclease with exquisite substrate specificity using atypical catalytic residues. Biochemistry 52, 8633-8642
-
(2013)
Biochemistry
, vol.52
, pp. 8633-8642
-
-
Griffin, M.A.1
Davis, J.H.2
Strobel, S.A.3
-
60
-
-
84875876832
-
Comparative proteomics identifies the cell-associated lethality of M tuberculosis RelBE-like toxin-antitoxin complexes
-
Miallau, L., Jain, P., Arbing, M. A., Cascio, D., Phan, T., Ahn, C. J., Chan, S., Chernishof, I., Maxson, M., Chiang, J., Jacobs, W. R., Jr., and Eisenberg, D. S. (2013) Comparative proteomics identifies the cell-associated lethality of M. tuberculosis RelBE-like toxin-antitoxin complexes. Structure 21, 627-637
-
(2013)
Structure
, vol.21
, pp. 627-637
-
-
Miallau, L.1
Jain, P.2
Arbing, M.A.3
Cascio, D.4
Phan, T.5
Ahn, C.J.6
Chan, S.7
Chernishof, I.8
Maxson, M.9
Chiang, J.10
Jacobs Jr., W.R.11
Eisenberg, D.S.12
-
61
-
-
0029680387
-
SOS response as an adaptive response toDNAdamage in prokaryotes
-
Shinagawa, H. (1996) SOS response as an adaptive response toDNAdamage in prokaryotes. EXS 77, 221-235
-
(1996)
EXS
, vol.77
, pp. 221-235
-
-
Shinagawa, H.1
-
62
-
-
84883342218
-
(p) ppGpp controls bacterial persistence by stochastic induction of toxin-antitoxin activity
-
Maisonneuve, E., Castro-Camargo, M., and Gerdes, K. (2013) (p) ppGpp controls bacterial persistence by stochastic induction of toxin-antitoxin activity. Cell 154, 1140-1150
-
(2013)
Cell
, vol.154
, pp. 1140-1150
-
-
Maisonneuve, E.1
Castro-Camargo, M.2
Gerdes, K.3
-
63
-
-
84861550633
-
Regulation of enteric vapBC transcription: Induction by VapC toxin dimer-breaking
-
Winther, K. S., and Gerdes, K. (2012) Regulation of enteric vapBC transcription: induction by VapC toxin dimer-breaking. Nucleic Acids Res. 40, 4347-4357
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4347-4357
-
-
Winther, K.S.1
Gerdes, K.2
-
64
-
-
0029861722
-
ATP-dependent degradation of CcdA by Lon protease. Effects of secondary structure and heterologous subunit interactions
-
Van Melderen, L., Thi, M. H., Lecchi, P., Gottesman, S., Couturier, M., and Maurizi, M. R. (1996) ATP-dependent degradation of CcdA by Lon protease. Effects of secondary structure and heterologous subunit interactions. J. Biol. Chem. 271, 27730-27738
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 27730-27738
-
-
Van Melderen, L.1
Thi, M.H.2
Lecchi, P.3
Gottesman, S.4
Couturier, M.5
Maurizi, M.R.6
-
66
-
-
38649092391
-
Transcription profiling of the stringent response in Escherichia coli
-
Durfee, T., Hansen, A. M., Zhi, H., Blattner, F. R., and Jin, D. J. (2008) Transcription profiling of the stringent response in Escherichia coli. J. Bacteriol. 190, 1084-1096
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1084-1096
-
-
Durfee, T.1
Hansen, A.M.2
Zhi, H.3
Blattner, F.R.4
Jin, D.J.5
-
67
-
-
4043069926
-
DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by (p) ppGpp and the initiating NTP
-
Paul, B. J., Barker, M. M., Ross, W., Schneider, D. A., Webb, C., Foster, J. W., and Gourse, R. L. (2004) DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by (p) ppGpp and the initiating NTP. Cell 118, 311-322
-
(2004)
Cell
, vol.118
, pp. 311-322
-
-
Paul, B.J.1
Barker, M.M.2
Ross, W.3
Schneider, D.A.4
Webb, C.5
Foster, J.W.6
Gourse, R.L.7
-
68
-
-
77954257799
-
Con-Surf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
Ashkenazy, H., Erez, E., Martz, E., Pupko, T., and Ben-Tal, N. (2010) Con-Surf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38, W529-W533
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
|