-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
DOI 10.1126/science.287.5461.2185
-
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky A, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Siden-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, Worley KC, Woodage T, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC (2000) The genome sequence of Drosophila melanogaster. Science 287(5461):2185-2195 (Pubitemid 30177013)
-
(2000)
Science
, vol.287
, Issue.5461
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
George, R.A.11
Lewis, S.E.12
Richards, S.13
Ashburner, M.14
Henderson, S.N.15
Sutton, G.G.16
Wortman, J.R.17
Yandell, M.D.18
Zhang, Q.19
Chen, L.X.20
Brandon, R.C.21
Rogers, Y.C.22
Blazej, R.G.23
Champe, M.24
Pfeiffer, B.D.25
Wan, K.H.26
Doyle, C.27
Baxter, E.G.28
Helt, G.29
Nelson, C.R.30
Gabor, M.G.L.31
Abril, J.F.32
Agbayani, A.33
An, H.-J.34
Andrews-Pfannkoch, C.35
Baldwin, D.36
Ballew, R.M.37
Basu, A.38
Baxendale, J.39
Bayraktaroglu, L.40
Beasley, E.M.41
Beeson, K.Y.42
Benos, P.V.43
Berman, B.P.44
Bhandari, D.45
Bolshakov, S.46
Borkova, D.47
Botchan, M.R.48
Bouck, J.49
Brokstein, P.50
Brottier, P.51
Burtis, K.C.52
Busam, D.A.53
Butler, H.54
Cadieu, E.55
Center, A.56
Chandra, I.57
Cherry, J.M.58
Cawley, S.59
Dahlke, C.60
Davenport, L.B.61
Davies, P.62
De Pablos, B.63
Delcher, A.64
Deng, Z.65
Mays, A.D.66
Dew, I.67
Dietz, S.M.68
Dodson, K.69
Doup, L.E.70
Downes, M.71
Dugan-Rocha, S.72
Dunkov, B.C.73
Dunn, P.74
Durbin, K.J.75
Evangelista, C.C.76
Ferraz, C.77
Ferriera, S.78
Fleischmann, W.79
Fosler, C.80
Gabrielian, A.E.81
Garg, N.S.82
Gelbart, W.M.83
Glasser, K.84
Glodek, A.85
Gong, F.86
Gorrell, J.H.87
Gu, Z.88
Guan, P.89
Harris, M.90
Harris, N.L.91
Harvey, D.92
Heiman, T.J.93
Hernandez, J.R.94
Houck, J.95
Hostin, D.96
Houston, K.A.97
Howland, T.J.98
Wei, M.-H.99
more..
-
2
-
-
0036205874
-
Ab initio gene identification: Prokaryote genome annotation with GeneScan and GLIMMER
-
Aggarwal G, Ramaswamy R (2002) Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER. J Biosci 27(1 Suppl 1):7-14 (Pubitemid 34285615)
-
(2002)
Journal of Biosciences
, vol.27
, Issue.1 SUPPL. 1
, pp. 7-14
-
-
Aggarwal, G.1
Ramaswamy, R.2
-
3
-
-
0036673472
-
Automated de novo identification of repeat sequence families in sequenced genomes
-
DOI 10.1101/gr.88502
-
Bao Z, Eddy SR (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res 12(8):1269-1276. doi:10.1101/gr.88502 (Pubitemid 41264428)
-
(2002)
Genome Research
, vol.12
, Issue.8
, pp. 1269-1276
-
-
Bao, Z.1
Eddy, S.R.2
-
4
-
-
38049057159
-
MAKER: An easy-touse annotation pipeline designed for emerging model organism genomes
-
doi:10.1101/gr.6743907
-
Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sanchez Alvarado A, Yandell M (2008) MAKER: an easy-touse annotation pipeline designed for emerging model organism genomes. Genome Res 18(1):188-196. doi:10.1101/gr.6743907
-
(2008)
Genome Res
, vol.18
, Issue.1
, pp. 188-196
-
-
Cantarel, B.L.1
Korf, I.2
Robb, S.M.3
Parra, G.4
Ross, E.5
Moore, B.6
Holt, C.7
Sanchez Alvarado, A.8
Yandell, M.9
-
5
-
-
34147180390
-
Creating a honey bee consensus gene set
-
doi:10.1186/gb-2007-8-1-r13
-
Elsik CG, Mackey AJ, Reese JT, Milshina NV, Roos DS, Weinstock GM (2007) Creating a honey bee consensus gene set. Genome Biol 8(1):R13. doi:10.1186/gb-2007-8-1-r13
-
(2007)
Genome Biol
, vol.8
, Issue.1
-
-
Elsik, C.G.1
Mackey, A.J.2
Reese, J.T.3
Milshina, N.V.4
Roos, D.S.5
Weinstock, G.M.6
-
6
-
-
0141905891
-
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
-
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK Jr, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O (2003) Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res 31(19):5654-5666
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.19
, pp. 5654-5666
-
-
Haas, B.J.1
Delcher, A.L.2
Mount, S.M.3
Wortman, J.R.4
Smith Jr., R.K.5
Hannick, L.I.6
Maiti, R.7
Ronning, C.M.8
Rusch, D.B.9
Town, C.D.10
Salzberg, S.L.11
White, O.12
-
7
-
-
0037020114
-
The genome sequence of the malaria mosquito Anopheles gambiae
-
doi:10.1126/science.1076181
-
Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O'Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL (2002) The genome sequence of the malaria mosquito Anopheles gambiae. Science 298(5591):129-149. doi:10.1126/science.1076181
-
(2002)
Science
, vol.298
, Issue.5591
, pp. 129-149
-
-
Holt, R.A.1
Subramanian, G.M.2
Halpern, A.3
Sutton, G.G.4
Charlab, R.5
Nusskern, D.R.6
Wincker, P.7
Clark, A.G.8
Ribeiro, J.M.9
Wides, R.10
Salzberg, S.L.11
Loftus, B.12
Yandell, M.13
Majoros, W.H.14
Rusch, D.B.15
Lai, Z.16
Kraft, C.L.17
Abril, J.F.18
Anthouard, V.19
Arensburger, P.20
Atkinson, P.W.21
Baden, H.22
De Berardinis, V.23
Baldwin, D.24
Benes, V.25
Biedler, J.26
Blass, C.27
Bolanos, R.28
Boscus, D.29
Barnstead, M.30
Cai, S.31
Center, A.32
Chaturverdi, K.33
Christophides, G.K.34
Chrystal, M.A.35
Clamp, M.36
Cravchik, A.37
Curwen, V.38
Dana, A.39
Delcher, A.40
Dew, I.41
Evans, C.A.42
Flanigan, M.43
Grundschober-Freimoser, A.44
Friedli, L.45
Gu, Z.46
Guan, P.47
Guigo, R.48
Hillenmeyer, M.E.49
Hladun, S.L.50
Hogan, J.R.51
Hong, Y.S.52
Hoover, J.53
Jaillon, O.54
Ke, Z.55
Kodira, C.56
Kokoza, E.57
Koutsos, A.58
Letunic, I.59
Levitsky, A.60
Liang, Y.61
Lin, J.J.62
Lobo, N.F.63
Lopez, J.R.64
Malek, J.A.65
McIntosh, T.C.66
Meister, S.67
Miller, J.68
Mobarry, C.69
Mongin, E.70
Murphy, S.D.71
O'Brochta, D.A.72
Pfannkoch, C.73
Qi, R.74
Regier, M.A.75
Remington, K.76
Shao, H.77
Sharakhova, M.V.78
Sitter, C.D.79
Shetty, J.80
Smith, T.J.81
Strong, R.82
Sun, J.83
Thomasova, D.84
Ton, L.Q.85
Topalis, P.86
Tu, Z.87
Unger, M.F.88
Walenz, B.89
Wang, A.90
Wang, J.91
Wang, M.92
Wang, X.93
Woodford, K.J.94
Wortman, J.R.95
Wu, M.96
Yao, A.97
Zdobnov, E.M.98
Zhang, H.99
more..
-
8
-
-
59649116641
-
The genome of a lepidopteran model insect, the silkworm Bombyx mori
-
International Silkworm Genome C doi:10.1016/j.ibmb.2008.11.004
-
International Silkworm Genome C (2008) The genome of a lepidopteran model insect, the silkworm Bombyx mori. Insect Biochem Mol Biol 38(12):1036-1045. doi:10.1016/j.ibmb.2008.11.004
-
(2008)
Insect Biochem Mol Biol
, vol.38
, Issue.12
, pp. 1036-1045
-
-
-
9
-
-
84880014507
-
KONAGA base: A genomic and transcriptomic database for the diamondback moth, Plutella xylostella
-
doi:10.1186/1471-2164-14-464
-
Jouraku A, Yamamoto K, Kuwazaki S, Urio M, Suetsugu Y, Narukawa J, Miyamoto K, Kurita K, Kanamori H, Katayose Y, Matsumoto T, Noda H (2013) KONAGA base: a genomic and transcriptomic database for the diamondback moth, Plutella xylostella. BMC Genomics 14:464. doi:10.1186/1471-2164-14-464
-
(2013)
BMC Genomics
, vol.14
, pp. 464
-
-
Jouraku, A.1
Yamamoto, K.2
Kuwazaki, S.3
Urio, M.4
Suetsugu, Y.5
Narukawa, J.6
Miyamoto, K.7
Kurita, K.8
Kanamori, H.9
Katayose, Y.10
Matsumoto, T.11
Noda, H.12
-
10
-
-
2942544417
-
Gene finding in novel genomes
-
doi:10.1186/1471-2105-5-59
-
Korf I (2004) Gene finding in novel genomes. BMC Bioinform 5:59. doi:10.1186/1471-2105-5-59
-
(2004)
BMC Bioinform
, vol.5
, pp. 59
-
-
Korf, I.1
-
11
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi:10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25. doi:10.1186/gb-2009-10-3-r25
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
12
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
DOI 10.1093/nar/26.4.1107
-
Lukashin AV, Borodovsky M (1998) GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res 26(4):1107-1115 (Pubitemid 28291669)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.4
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
13
-
-
0036596123
-
Computer programs for eukaryotic gene prediction
-
Makarov V (2002) Computer programs for eukaryotic gene prediction. Brief Bioinform 3(2):195-199
-
(2002)
Brief Bioinform
, vol.3
, Issue.2
, pp. 195-199
-
-
Makarov, V.1
-
14
-
-
34249848751
-
CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
-
DOI 10.1093/bioinformatics/btm071
-
Parra G, Bradnam K, Korf I (2007) CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23(9):1061-1067. doi:10.1093/bioinformatics/btm071 (Pubitemid 47050556)
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
15
-
-
29144455282
-
De novo identification of repeat families in large genomes
-
DOI 10.1093/bioinformatics/bti1018
-
Price AL, Jones NC, Pevzner PA (2005) De novo identification of repeat families in large genomes. Bioinformatics 21(Suppl 1):i351-i358. doi:10.1093/bioinformatics/bti1018 (Pubitemid 41794508)
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Price, A.L.1
Jones, N.C.2
Pevzner, P.A.3
-
16
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
DOI 10.1093/nar/gkl842
-
Pruitt KD, Tatusova T, Maglott DR (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35(Database issue):D61-65. doi:10.1093/nar/gkl842 (Pubitemid 46056171)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
17
-
-
0033616509
-
Gene identification in bacterial and organellar genomes using GeneScan
-
PII S0097848598000345
-
Ramakrishna R, Srinivasan R (1999) Gene identification in bacterial and organellar genomes using GeneScan. Comput Chem 23(2):165-174 (Pubitemid 129752331)
-
(1999)
Computers and Chemistry
, vol.23
, Issue.2
, pp. 165-174
-
-
Ramakrishna, R.1
Srinivasan, R.2
-
18
-
-
41949090434
-
The genome of the model beetle and pest Tribolium castaneum
-
DOI 10.1038/nature06784, PII NATURE06784
-
Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, Roth S, Schroder R, Tautz D, Zdobnov EM, Muzny D, Attaway T, Bell S, Buhay CJ, Chandrabose MN, Chavez D, Clerk-Blankenburg KP, Cree A, Dao M, Davis C, Chacko J, Dinh H, Dugan-Rocha S, Fowler G, Garner TT, Garnes J, Gnirke A, Hawes A, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Jackson L, Kovar C, Kowis A, Lee S, Lewis LR, Margolis J, Morgan M, Nazareth LV, Nguyen N, Okwuonu G, Parker D, Ruiz SJ, Santibanez J, Savard J, Scherer SE, Schneider B, Sodergren E, Vattahil S, Villasana D, White CS, Wright R, Park Y, Lord J, Oppert B, Brown S, Wang L, Weinstock G, Liu Y, Worley K, Elsik CG, Reese JT, Elhaik E, Landan G, Graur D, Arensburger P, Atkinson P, Beidler J, Demuth JP, Drury DW, Du YZ, Fujiwara H, Maselli V, Osanai M, Robertson HM, Tu Z, Wang JJ, Wang S, Song H, Zhang L, Werner D, Stanke M, Morgenstern B, Solovyev V, Kosarev P, Brown G, Chen HC, Ermolaeva O, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Maglott D, Pruitt K, Sapojnikov V, Souvorov A, Mackey AJ, Waterhouse RM, Wyder S, Kriventseva EV, Kadowaki T, Bork P, Aranda M, Bao R, Beermann A, Berns N, Bolognesi R, Bonneton F, Bopp D, Butts T, Chaumot A, Denell RE, Ferrier DE, Gordon CM, Jindra M, Lan Q, Lattorff HM, Laudet V, von Levetsow C, Liu Z, Lutz R, Lynch JA, da Fonseca RN, Posnien N, Reuter R, Schinko JB, Schmitt C, Schoppmeier M, Shippy TD, Simonnet F, Marques-Souza H, Tomoyasu Y, Trauner J, Van der Zee M, Vervoort M, Wittkopp N, Wimmer EA, Yang X, Jones AK, Sattelle DB, Ebert PR, Nelson D, Scott JG, Muthukrishnan S, Kramer KJ, Arakane Y, Zhu Q, Hogenkamp D, Dixit R, Jiang H, Zou Z, Marshall J, Elpidina E, Vinokurov K, Oppert C, Evans J, Lu Z, Zhao P, Sumathipala N, Altincicek B, Vilcinskas A, Williams M, Hultmark D, Hetru C, Hauser F, Cazzamali G, Williamson M, Li B, Tanaka Y, Predel R, Neupert S, Schachtner J, Verleyen P, Raible F, Walden KK, Angeli S, Foret S, Schuetz S, Maleszka R, Miller SC, Grossmann D (2008) The genome of the model beetle and pest Tribolium castaneum. Nature 452(7190):949-955. doi:10.1038/nature06784 (Pubitemid 351589612)
-
(2008)
Nature
, vol.452
, Issue.7190
, pp. 949-955
-
-
Richards, S.1
Gibbs, R.A.2
Weinstock, G.M.3
Brown, S.J.4
Denell, R.5
Beeman, R.W.6
Gibbs, R.7
Bucher, G.8
Friedrich, M.9
Grimmelikhuijzen, C.J.P.10
Klingler, M.11
Lorenzen, M.12
Roth, S.13
Schroder, R.14
Tautz, D.15
Zdobnov, E.M.16
Muzny, D.17
Attaway, T.18
Bell, S.19
Buhay, C.J.20
Chandrabose, M.N.21
Chavez, D.22
Clerk-Blankenburg, K.P.23
Cree, A.24
Dao, M.25
Davis, C.26
Chacko, J.27
Dinh, H.28
Dugan-Rocha, S.29
Fowler, G.30
Garner, T.T.31
Garnes, J.32
Gnirke, A.33
Hawes, A.34
Hernandez, J.35
Hines, S.36
Holder, M.37
Hume, J.38
Jhangiani, S.N.39
Joshi, V.40
Khan, Z.M.41
Jackson, L.42
Kovar, C.43
Kowis, A.44
Lee, S.45
Lewis, L.R.46
Margolis, J.47
Morgan, M.48
Nazareth, L.V.49
Nguyen, N.50
Okwuonu, G.51
Parker, D.52
Ruiz, S.-J.53
Santibanez, J.54
Savard, J.55
Scherer, S.E.56
Schneider, B.57
Sodergren, E.58
Vattahil, S.59
Villasana, D.60
White, C.S.61
Wright, R.62
Park, Y.63
Lord, J.64
Oppert, B.65
Brown, S.66
Wang, L.67
Weinstock, G.68
Liu, Y.69
Worley, K.70
Elsik, C.G.71
Reese, J.T.72
Elhaik, E.73
Landan, G.74
Graur, D.75
Arensburger, P.76
Atkinson, P.77
Beidler, J.78
Demuth, J.P.79
Drury, D.W.80
Du, Y.-Z.81
Fujiwara, H.82
Maselli, V.83
Osanai, M.84
Robertson, H.M.85
Tu, Z.86
Wang, J.-J.87
Wang, S.88
Song, H.89
Zhang, L.90
Werner, D.91
Stanke, M.92
Morgenstern, B.93
Solovyev, V.94
Kosarev, P.95
Brown, G.96
Chen, H.-C.97
Ermolaeva, O.98
Hlavina, W.99
more..
-
19
-
-
84455171820
-
Cultivating a demand for clean cookstoves
-
doi:10.1126/science.334.6063.1636-b
-
Robinson BE, Baumgartner J (2011) Cultivating a demand for clean cookstoves. Science 334(6063):1636-1637. doi:10.1126/science.334.6063.1636-b
-
(2011)
Science
, vol.334
, Issue.6063
, pp. 1636-1637
-
-
Robinson, B.E.1
Baumgartner, J.2
-
20
-
-
79952781362
-
Creating a buzz about insect genomes
-
doi:10.1126/science.3316023.1386
-
Robinson GE, Hackett KJ, Purcell-Miramontes M, Brown SJ, Evans JD, Goldsmith MR, Lawson D, Okamuro J, Robertson HM, Schneider DJ (2011) Creating a buzz about insect genomes. Science 331(6023):1386. doi:10.1126/science.3316023. 1386
-
(2011)
Science
, vol.331
, Issue.6023
, pp. 1386
-
-
Robinson, G.E.1
Hackett, K.J.2
Purcell-Miramontes, M.3
Brown, S.J.4
Evans, J.D.5
Goldsmith, M.R.6
Lawson, D.7
Okamuro, J.8
Robertson, H.M.9
Schneider, D.J.10
-
21
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
doi:10.1186/1471-2105-6-31
-
Slater GS, Birney E (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinform 6:31. doi:10.1186/1471-2105-6-31
-
(2005)
BMC Bioinform
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
22
-
-
79954986915
-
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)
-
doi:10.1073/pnas.1008617108
-
Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Helmkampf M, Holley JA, Hu H, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Laird J, Mathis KA, Moeller JA, Munoz-Torres MC, Murphy MC, Nakamura R, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Robertson HM, Smith CR, Suarez AV, Suen G, Suhr EL, Tao S, Torres CW, van Wilgenburg E, Viljakainen L, Walden KK, Wild AL, Yandell M, Yorke JA, Tsutsui ND (2011a) Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci USA 108(14):5673-5678. doi:10.1073/pnas.1008617108
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.14
, pp. 5673-5678
-
-
Smith, C.D.1
Zimin, A.2
Holt, C.3
Abouheif, E.4
Benton, R.5
Cash, E.6
Croset, V.7
Currie, C.R.8
Elhaik, E.9
Elsik, C.G.10
Fave, M.J.11
Fernandes, V.12
Gadau, J.13
Gibson, J.D.14
Graur, D.15
Grubbs, K.J.16
Hagen, D.E.17
Helmkampf, M.18
Holley, J.A.19
Hu, H.20
Viniegra, A.S.21
Johnson, B.R.22
Johnson, R.M.23
Khila, A.24
Kim, J.W.25
Laird, J.26
Mathis, K.A.27
Moeller, J.A.28
Munoz-Torres, M.C.29
Murphy, M.C.30
Nakamura, R.31
Nigam, S.32
Overson, R.P.33
Placek, J.E.34
Rajakumar, R.35
Reese, J.T.36
Robertson, H.M.37
Smith, C.R.38
Suarez, A.V.39
Suen, G.40
Suhr, E.L.41
Tao, S.42
Torres, C.W.43
Van Wilgenburg, E.44
Viljakainen, L.45
Walden, K.K.46
Wild, A.L.47
Yandell, M.48
Yorke, J.A.49
Tsutsui, N.D.50
more..
-
23
-
-
79955002712
-
Draft genome of the red harvester ant Pogonomyrmex barbatus
-
doi:10.1073/pnas.1007901108
-
Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gibson JD, Graur D, Gronenberg W, Grubbs KJ, Hagen DE, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Mathis KA, Munoz-Torres MC, Murphy MC, Mustard JA, Nakamura R, Niehuis O, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Suen G, Tao S, Torres CW, Tsutsui ND, Viljakainen L, Wolschin F, Gadau J (2011b) Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci USA 108(14):5667-5672. doi:10.1073/pnas.1007901108
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.14
, pp. 5667-5672
-
-
Smith, C.R.1
Smith, C.D.2
Robertson, H.M.3
Helmkampf, M.4
Zimin, A.5
Yandell, M.6
Holt, C.7
Hu, H.8
Abouheif, E.9
Benton, R.10
Cash, E.11
Croset, V.12
Currie, C.R.13
Elhaik, E.14
Elsik, C.G.15
Fave, M.J.16
Fernandes, V.17
Gibson, J.D.18
Graur, D.19
Gronenberg, W.20
Grubbs, K.J.21
Hagen, D.E.22
Viniegra, A.S.23
Johnson, B.R.24
Johnson, R.M.25
Khila, A.26
Kim, J.W.27
Mathis, K.A.28
Munoz-Torres, M.C.29
Murphy, M.C.30
Mustard, J.A.31
Nakamura, R.32
Niehuis, O.33
Nigam, S.34
Overson, R.P.35
Placek, J.E.36
Rajakumar, R.37
Reese, J.T.38
Suen, G.39
Tao, S.40
Torres, C.W.41
Tsutsui, N.D.42
Viljakainen, L.43
Wolschin, F.44
Gadau, J.45
more..
-
24
-
-
23144444421
-
AUGUSTUS: A web server for gene prediction in eukaryotes that allows user-defined constraints
-
doi:10.1093/nar/gki458
-
Stanke M, Morgenstern B (2005) AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res 33(Web Server issue):W465-467. doi:10.1093/nar/gki458
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.WEB SERVER ISSUE
-
-
Stanke, M.1
Morgenstern, B.2
-
25
-
-
33645161645
-
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
-
doi:10.1186/1471-2105-7-62
-
Stanke M, Schoffmann O, Morgenstern B, Waack S (2006) Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinform 7:62. doi:10.1186/1471-2105-7-62
-
(2006)
BMC Bioinform
, vol.7
, pp. 62
-
-
Stanke, M.1
Schoffmann, O.2
Morgenstern, B.3
Waack, S.4
-
26
-
-
79952270451
-
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle
-
doi:10.1371/journal.pgen.1002007
-
Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Fave MJ, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Harkins TT, Helmkampf M, Hu H, Johnson BR, Kim J, Marsh SE, Moeller JA, Munoz-Torres MC, Murphy MC, Naughton MC, Nigam S, Overson R, Rajakumar R, Reese JT, Scott JJ, Smith CR, Tao S, Tsutsui ND, Viljakainen L, Wissler L, Yandell MD, Zimmer F, Taylor J, Slater SC, Clifton SW, Warren WC, Elsik CG, Smith CD, Weinstock GM, Gerardo NM, Currie CR (2011) The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet 7(2):e1002007. doi:10.1371/journal. pgen.1002007
-
(2011)
PLoS Genet
, vol.7
, Issue.2
-
-
Suen, G.1
Teiling, C.2
Li, L.3
Holt, C.4
Abouheif, E.5
Bornberg-Bauer, E.6
Bouffard, P.7
Caldera, E.J.8
Cash, E.9
Cavanaugh, A.10
Denas, O.11
Elhaik, E.12
Fave, M.J.13
Gadau, J.14
Gibson, J.D.15
Graur, D.16
Grubbs, K.J.17
Hagen, D.E.18
Harkins, T.T.19
Helmkampf, M.20
Hu, H.21
Johnson, B.R.22
Kim, J.23
Marsh, S.E.24
Moeller, J.A.25
Munoz-Torres, M.C.26
Murphy, M.C.27
Naughton, M.C.28
Nigam, S.29
Overson, R.30
Rajakumar, R.31
Reese, J.T.32
Scott, J.J.33
Smith, C.R.34
Tao, S.35
Tsutsui, N.D.36
Viljakainen, L.37
Wissler, L.38
Yandell, M.D.39
Zimmer, F.40
Taylor, J.41
Slater, S.C.42
Clifton, S.W.43
Warren, W.C.44
Elsik, C.G.45
Smith, C.D.46
Weinstock, G.M.47
Gerardo, N.M.48
Currie, C.R.49
more..
-
27
-
-
84860153513
-
Using and understanding RepeatMasker
-
doi:10.1007/978-1-61779-603-6-2
-
Tempel S (2012) Using and understanding RepeatMasker. Methods Mol Biol 859:29-51. doi:10.1007/978-1-61779-603-6-2
-
(2012)
Methods Mol Biol
, vol.859
, pp. 29-51
-
-
Tempel, S.1
-
28
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA -Seq
-
doi:10.1093/bioinformatics/btp120
-
Trapnell C, Pachter L, Salzberg SL (2009) TopHat: discovering splice junctions with RNA -Seq. Bioinformatics 25(9):1105-1111. doi:10.1093/ bioinformatics/btp120
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
29
-
-
77952123055
-
Transcript assembly and quantification by RNA -Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
doi:10.1038/nbt.1621
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L (2010) Transcript assembly and quantification by RNA -Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28(5):511-515. doi:10.1038/nbt.1621
-
(2010)
Nat Biotechnol
, vol.28
, Issue.5
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
30
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA -seq experiments with TopHat and Cufflinks
-
doi:10.1038/nprot.2012.016
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L (2012) Differential gene and transcript expression analysis of RNA -seq experiments with TopHat and Cufflinks. Nat Protocol 7(3):562-578. doi:10.1038/nprot.2012.016
-
(2012)
Nat Protocol
, vol.7
, Issue.3
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
31
-
-
10344265019
-
A draft sequence for the genome of the domesticated silkworm (Bombyx mori)
-
DOI 10.1126/science.1102210
-
Xia Q, Zhou Z, Lu C, Cheng D, Dai F, Li B, Zhao P, Zha X, Cheng T, Chai C, Pan G, Xu J, Liu C, Lin Y, Qian J, Hou Y, Wu Z, Li G, Pan M, Li C, Shen Y, Lan X, Yuan L, Li T, Xu H, Yang G, Wan Y, Zhu Y, Yu M, Shen W, Wu D, Xiang Z, Yu J, Wang J, Li R, Shi J, Li H, Li G, Su J, Wang X, Li G, Zhang Z, Wu Q, Li J, Zhang Q, Wei N, Xu J, Sun H, Dong L, Liu D, Zhao S, Zhao X, Meng Q, Lan F, Huang X, Li Y, Fang L, Li C, Li D, Sun Y, Zhang Z, Yang Z, Huang Y, Xi Y, Qi Q, He D, Huang H, Zhang X, Wang Z, Li W, Cao Y, Yu Y, Yu H, Li J, Ye J, Chen H, Zhou Y, Liu B, Wang J, Ye J, Ji H, Li S, Ni P, Zhang J, Zhang Y, Zheng H, Mao B, Wang W, Ye C, Li S, Wang J, Wong GK, Yang H, Biology Analysis G (2004) A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science 306(5703):1937-1940. doi:10.1126/science.1102210 (Pubitemid 39627858)
-
(2004)
Science
, vol.306
, Issue.5703
, pp. 1937-1940
-
-
Xia, Q.1
Zhou, Z.2
Lu, C.3
Cheng, D.4
Dai, F.5
Li, B.6
Zhao, P.7
Zha, X.8
Cheng, T.9
Chai, C.10
Pan, G.11
Xu, J.12
Liu, C.13
Lin, Y.14
Qian, J.15
Hou, Y.16
Wu, Z.17
Li, G.18
Pan, M.19
Li, C.20
Shen, Y.21
Lan, X.22
Yuan, L.23
Li, T.24
Xu, H.25
Yang, G.26
Wan, Y.27
Zhu, Y.28
Yu, M.29
Shen, W.30
Wu, D.31
Xiang, Z.32
Yu, J.33
Wang, J.34
Li, R.35
Shi, J.36
Li, H.37
Li, G.38
Su, J.39
Wang, X.40
Li, G.41
Zhang, Z.42
Wu, Q.43
Li, J.44
Zhang, Q.45
Wei, N.46
Xu, J.47
Sun, H.48
Dong, L.49
Liu, D.50
Zhao, S.51
Zhao, X.52
Meng, Q.53
Lan, F.54
Huang, X.55
Li, Y.56
Fang, L.57
Li, C.58
Li, D.59
Sun, Y.60
Zhang, Z.61
Yang, Z.62
Huang, Y.63
Xi, Y.64
Qi, Q.65
He, D.66
Huang, H.67
Zhang, X.68
Wang, Z.69
Li, W.70
Cao, Y.71
Yu, Y.72
Yu, H.73
Li, J.74
Ye, J.75
Chen, H.76
Zhou, Y.77
Liu, B.78
Wang, J.79
Ye, J.80
Ji, H.81
Li, S.82
Ni, P.83
Zhang, J.84
Zhang, Y.85
Zheng, H.86
Mao, B.87
Wang, W.88
Ye, C.89
Li, S.90
Wang, J.91
Wong, G.K.-S.92
Yang, H.93
more..
-
32
-
-
0035002015
-
Computational inference of homologous gene structures in the human genome
-
DOI 10.1101/gr.175701
-
Yeh RF, Lim LP, Burge CB (2001) Computational inference of homologous gene structures in the human genome. Genome Res 11(5):803-816. doi:10.1101/gr.175701 (Pubitemid 32447865)
-
(2001)
Genome Research
, vol.11
, Issue.5
, pp. 803-816
-
-
Yeh, R.-F.1
Lim, L.P.2
Burge, C.B.3
-
33
-
-
84873087245
-
A heterozygous moth genome provides insights into herbivory and detoxification
-
doi:10.1038/ng.2524
-
You M, Yue Z, He W, Yang X, Yang G, Xie M, Zhan D, Baxter SW, Vasseur L, Gurr GM, Douglas CJ, Bai J, Wang P, Cui K, Huang S, Li X, Zhou Q, Wu Z, Chen Q, Liu C, Wang B, Xu X, Lu C, Hu M, Davey JW, Smith SM, Chen M, Xia X, Tang W, Ke F, Zheng D, Hu Y, Song F, You Y, Ma X, Peng L, Zheng Y, Liang Y, Chen Y, Yu L, Zhang Y, Liu Y, Li G, Fang L, Li J, Zhou X, Luo Y, Gou C, Wang J, Yang H (2013) A heterozygous moth genome provides insights into herbivory and detoxification. Nat Genet 45(2):220-225. doi:10.1038/ng.2524
-
(2013)
Nat Genet
, vol.45
, Issue.2
, pp. 220-225
-
-
You, M.1
Yue, Z.2
He, W.3
Yang, X.4
Yang, G.5
Xie, M.6
Zhan, D.7
Baxter, S.W.8
Vasseur, L.9
Gurr, G.M.10
Douglas, C.J.11
Bai, J.12
Wang, P.13
Cui, K.14
Huang, S.15
Li, X.16
Zhou, Q.17
Wu, Z.18
Chen, Q.19
Liu, C.20
Wang, B.21
Xu, X.22
Lu, C.23
Hu, M.24
Davey, J.W.25
Smith, S.M.26
Chen, M.27
Xia, X.28
Tang, W.29
Ke, F.30
Zheng, D.31
Hu, Y.32
Song, F.33
You, Y.34
Ma, X.35
Peng, L.36
Zheng, Y.37
Liang, Y.38
Chen, Y.39
Yu, L.40
Zhang, Y.41
Liu, Y.42
Li, G.43
Fang, L.44
Li, J.45
Zhou, X.46
Luo, Y.47
Gou, C.48
Wang, J.49
Yang, H.50
more..
-
34
-
-
84876522009
-
MonarchBase: The monarch butterfly genome database
-
doi:10.1093/nar/gks1057
-
Zhan S, Reppert SM (2013) MonarchBase: the monarch butterfly genome database. Nucleic Acids Res 41(Database issue):D758-763. doi:10.1093/nar/gks1057
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
-
-
Zhan, S.1
Reppert, S.M.2
-
35
-
-
81855174762
-
The monarch butterfly genome yields insights into long-distance migration
-
doi:10.1016/j.cell.2011.09.052
-
Zhan S, Merlin C, Boore JL, Reppert SM (2011) The monarch butterfly genome yields insights into long-distance migration. Cell 147(5):1171-1185. doi:10.1016/j.cell.2011.09.052
-
(2011)
Cell
, vol.147
, Issue.5
, pp. 1171-1185
-
-
Zhan, S.1
Merlin, C.2
Boore, J.L.3
Reppert, S.M.4
|