Gene identification in bacterial and organellar genomes using GeneScan

Computers and Chemistry

Volumn 23, Issue 2, 1999, Pages 165-174

  Ramakrishna, Ramaswamy ^a   Srinivasan, Ramachandran ^a  

^a NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

Author keywords

Fourier; GeneScan; Haemophilus; Mycoplasma; Plasmodium

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BACTERIAL GENOME; GENETICS; GENOME; HAEMOPHILUS INFLUENZAE; MYCOPLASMA; OPEN READING FRAME; PLASMODIUM FALCIPARUM;

ALGORITHMS; ANIMALS; GENOME; GENOME, BACTERIAL; HAEMOPHILUS INFLUENZAE; MYCOPLASMA; OPEN READING FRAMES; PLASMODIUM FALCIPARUM;

EID: 0033616509     PISSN: 00978485     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0097-8485(98)00034-5     Document Type: Article

References (17)

1. Bhattacharya, A., Bhattacharya, S., Joshi, A., Ramachandran, S., Ramaswamy, R. 1998. Parasitology Today, (submitted) .
2. Blaxter, M., Aslett, M., 1997. Internet resources for parasite genome projects. Trends in Genetics 13, 40.
3. Borodovsky, M.Y., McIninch, J.D., 1993. GeneMark: parallel gene recognition for both strands. Computers and Chemistry 17, 123.
4. Fickett, J.W., 1982. Recognition of protein coding regions in DNA sequences. Nucleic Acids Research 10, 5303.
5. Fickett, J.W., 1994. Inferring genes from open reading frames. Computers and Chemistry 18, 203.
6. Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A. et al, 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496.
7. Fraser, CM., Gocayne, D.J., White, O., Adams, M.D. et al, 1995. The minimal gene complement of Mycoplasma genitalium. Science 270, 397.
8. Guigo, R. 1998. DNA composition, codon usage and exon prediction, (in press).
9. Himmelreich, R., Plagens, H., Hubert, H., Reiner, B., Herrmann, R., 1997. Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. Nucleic Acids Research 25, 701.
10. Hood, D.W., Deadman, M.E., Jennings, M.P., Biseric, M., Fleischmann, R.D., Venter, J.C., Moxon, E.R., 1996. DNA repeats identify novel virulence genes in Haemophilus influenzae. Proceedings of National Academy of Sciences USA 93, 11121.
11. Lushakin, A.V., Borodovsky, M., 1998. GeneMark.hmm: new-solutions to gene finding. Nucleic Acids Research 26, 1107.
12. Pearson, W.R., Lipman, D.J., 1988. Improved tools for biological sequence comparison. Proceedings of National Academy of Science U.S.A. 85, 2444.
13. Pennisi, E., 1997. Microbial genomes come tumbling in. Science 277, 1433.
14. Rastan, S., Beeley, L.J., 1997. Functional genomics: going forwards from the databases. Current Opinion in Genetics and Development 7, 777.
15. Sharp, P.M., Tuohy, T.M.F., Mosurski, K.R., 1986. Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Research 14, 5125.
16. Tiwari, S., Ramachandran, S., Bhattacharya, A., Bhattacharya, S., Ramaswamy, R., 1997. Prediction of probable genes by Fourier analysis of genomic sequences. Computer Application in Biosciences 13, 263.
17. Wilson, R.J.M., Denny, P.W., Preiser, P.R. et al, 1996. Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum. Journal of Molecular Biology 261, 155.