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Volumn 106, Issue 2, 2014, Pages 347-356

Gordonia jinhuaensis sp. nov., a novel actinobacterium, isolated from a VBNC (viable but non-culturable) state in pharmaceutical wastewater

Author keywords

Gordonia jinhuaensis sp. nov; Pharmaceutical wastewater; Polyphasic taxonomy; Rpf; VBNC

Indexed keywords

DIAMINOPIMELIC ACID; GENOMIC DNA; MANNOSIDE; MENAQUINONE; MYCOLIC ACID; PHOSPHATIDYLINOSITOL; PHOSPHATIDYLINOSITOL MANNOSIDE; RNA 16S; UNCLASSIFIED DRUG;

EID: 84905045081     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-014-0207-3     Document Type: Article
Times cited : (23)

References (54)
  • 3
    • 0018100898 scopus 로고
    • Studies on aminopeptidase for the distinction of Gram-negative from Gram-positive bacteria
    • Cerny G (1978) Studies on aminopeptidase for the distinction of Gram-negative from Gram-positive bacteria. Appl Microbiol Biotechnol 5:113-122
    • (1978) Appl Microbiol Biotechnol , vol.5 , pp. 113-122
    • Cerny, G.1
  • 6
    • 84856405489 scopus 로고    scopus 로고
    • Research progress of VBNC bacteria - A review
    • Ding LX, Su XM, Yokota A (2011) Research progress of VBNC bacteria - a review. Acta Microbiol Sin 51:858-862
    • (2011) Acta Microbiol Sin , vol.51 , pp. 858-862
    • Ding, L.X.1    Su, X.M.2    Yokota, A.3
  • 7
    • 84861130845 scopus 로고    scopus 로고
    • Cloning and expression of Micrococcus luteus IAM 14879 Rpf and its role in the recovery of the VBNC state in Rhodococcus sp. DS471
    • Ding LX, Zhang PH, Hong HC, Lin HJ, Yokota A (2012) Cloning and expression of Micrococcus luteus IAM 14879 Rpf and its role in the recovery of the VBNC state in Rhodococcus sp. DS471. Acta Microbiol Sin 52:77-89
    • (2012) Acta Microbiol Sin , vol.52 , pp. 77-89
    • Ding, L.X.1    Zhang, P.H.2    Hong, H.C.3    Lin, H.J.4    Yokota, A.5
  • 10
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Biol 20:406-416
    • (1971) Syst Biol , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 14
    • 9744253724 scopus 로고    scopus 로고
    • Five novel Kitasatospora species from soil: Kitasatospora arboriphila sp. nov., K. gansuensis sp. nov., K. nipponensis sp. nov., K. paranensis sp., nov. and K. terrestris sp. nov
    • DOI 10.1099/ijs.0.63070-0
    • Groth I, Rodríguez C, Schütze B, Schmitz P, Leistner E, Goodfellow M (2004) Five novel Kitasatospora species from soil: Kitasatospora arboriphila sp. nov., K. gansuensis sp. nov., K.nipponensis sp. nov., K. paranensis sp. nov. and K. terrestris sp. nov. Int J Syst Evol Microbiol 54:2121-2129 (Pubitemid 39585398)
    • (2004) International Journal of Systematic and Evolutionary Microbiology , vol.54 , Issue.6 , pp. 2121-2129
    • Groth, I.1    Rodriguez, C.2    Schutze, B.3    Schmitz, P.4    Leistner, E.5    Goodfellow, M.6
  • 15
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704 (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 18
    • 58349119773 scopus 로고    scopus 로고
    • Phylogenetic studies of Gordonia species based on gyrB and secA1 gene analyses
    • Kang Y, Takeda K, Yazawa K, Mikami Y (2009) Phylogenetic studies of Gordonia species based on gyrB and secA1 gene analyses. Mycopathologia 167:95-105
    • (2009) Mycopathologia , vol.167 , pp. 95-105
    • Kang, Y.1    Takeda, K.2    Yazawa, K.3    Mikami, Y.4
  • 21
    • 70349316728 scopus 로고    scopus 로고
    • Gordonia kroppenstedtii sp. nov., a phenol-degrading actinomycete isolated from a polluted stream
    • Kim KK, Lee KC, Klenk HP, Oh HM, Lee JS (2009) Gordonia kroppenstedtii sp. nov., a phenol-degrading actinomycete isolated from a polluted stream. Int J Syst Evol Microbiol 59:1992-1996
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1992-1996
    • Kim, K.K.1    Lee, K.C.2    Klenk, H.P.3    Oh, H.M.4    Lee, J.S.5
  • 23
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 25
    • 0028126828 scopus 로고
    • Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae lechevalier and lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov.
    • Klatte S, Rainey FA, Kroppenstedt RM (1994) Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol 44:769-773 (Pubitemid 24315156)
    • (1994) International Journal of Systematic Bacteriology , vol.44 , Issue.4 , pp. 769-773
    • Klatte, S.1    Rainey, F.A.2    Kroppenstedt, R.M.3
  • 26
    • 36949064696 scopus 로고
    • Identification of Pseudomonas pyocyanea by oxidase reaction
    • Kovacs N (1956) Identification of Pseudomonas pyocyanea by oxidase reaction. Nature 178:703-704
    • (1956) Nature , vol.178 , pp. 703-704
    • Kovacs, N.1
  • 27
    • 0001440003 scopus 로고
    • Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases
    • Kroppenstedt RM (1982) Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5:2359-2387
    • (1982) J Liq Chromatogr , vol.5 , pp. 2359-2387
    • Kroppenstedt, R.M.1
  • 28
    • 39849098280 scopus 로고    scopus 로고
    • Gordonia lacunae sp. nov., isolated from an estuary
    • DOI 10.1016/j.syapm.2007.10.001, PII S0723202007001282
    • le Roes M, Goodwin CM, Meyers PR (2008) Gordonia lacunae sp. nov., isolated from an estuary. Syst Appl Microbiol 31:17-23 (Pubitemid 351318121)
    • (2008) Systematic and Applied Microbiology , vol.31 , Issue.1 , pp. 17-23
    • Le, R.M.1    Goodwin, C.M.2    Meyers, P.R.3
  • 32
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
    • Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 33
    • 84865770632 scopus 로고    scopus 로고
    • Paenibacillus frigoriresistens sp. Nov., a novel psychrotroph isolated from a peat bog in Heilongjiang Northern China
    • Ming H, Nie GX, Jiang HC, Yu TT, Zhou EM, Feng HG, Tang SK, Li WJ (2012) Paenibacillus frigoriresistens sp. nov., a novel psychrotroph isolated from a peat bog in Heilongjiang Northern China. Antonie van Leeuwenhoek 102:297-305
    • (2012) Antonie Van Leeuwenhoek , vol.102 , pp. 297-305
    • Ming, H.1    Nie, G.X.2    Jiang, H.C.3    Yu, T.T.4    Zhou, E.M.5    Feng, H.G.6    Tang, S.K.7    Li, W.J.8
  • 34
    • 0018393563 scopus 로고
    • Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa
    • Minnikin DE, Collins MD, Goodfellow M (1979) Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87-95 (Pubitemid 9239553)
    • (1979) Journal of Applied Bacteriology , vol.47 , Issue.1 , pp. 87-95
    • Minnikin, D.E.1    Collins, M.D.2    Goodfellow, M.3
  • 39
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 41
    • 0015462556 scopus 로고
    • Peptidoglycan types of bacterial cell walls and their taxonomic implications
    • Schleifer KH, Kandler O (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407-477
    • (1972) Bacteriol Rev , vol.36 , pp. 407-477
    • Schleifer, K.H.1    Kandler, O.2
  • 42
    • 0001023407 scopus 로고
    • Methods for characterization of Streptomyces species
    • Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313-340
    • (1966) Int J Syst Bacteriol , vol.16 , pp. 313-340
    • Shirling, E.B.1    Gottlieb, D.2
  • 44
    • 84655169805 scopus 로고    scopus 로고
    • Study on the flocculability of the Arthrobacter sp., an actinomycete resuscitated from the VBNC state
    • Su XM, Shen XY, Ding LX, Yokota A (2012) Study on the flocculability of the Arthrobacter sp., an actinomycete resuscitated from the VBNC state. World J Microbiol Biotechnol 28:91-97
    • (2012) World J Microbiol Biotechnol , vol.28 , pp. 91-97
    • Su, X.M.1    Shen, X.Y.2    Ding, L.X.3    Yokota, A.4
  • 46
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 48
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882 (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 49
    • 0015114371 scopus 로고
    • Proposal of a new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil
    • Tsukamura M (1971) Proposal of a new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil. J Gen Microbiol 68:15-26
    • (1971) J Gen Microbiol , vol.68 , pp. 15-26
    • Tsukamura, M.1
  • 50
    • 0000069003 scopus 로고
    • Genus Streptomyces Waksman and Henrici 1943
    • Williams S (1989) Genus Streptomyces Waksman and Henrici 1943. Bergey's Man Syst Bacteriol 4:2452-2492
    • (1989) Bergey's Man Syst Bacteriol , vol.4 , pp. 2452-2492
    • Williams, S.1
  • 54
    • 67651165968 scopus 로고    scopus 로고
    • An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa
    • Zhi XY, Li WJ, Stackebrandt E (2009) An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59:589-608
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 589-608
    • Zhi, X.Y.1    Li, W.J.2    Stackebrandt, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.