Gordonia otitidis sp. nov., isolated from a patient with external otitis

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 5, 2005, Pages 1871-1876

  Iida, Soji ^a   Taniguchi, Hiroko ^a   Kageyama, Akiko ^a   Yazawa, Katsukiyo ^a   Chibana, Hiroji ^a   Murata, Shota ^b   Nomura, Fumio ^c   Kroppenstedt, Reiner M ^d   Mikami, Yuzuru ^a  

^a CHIBA UNIVERSITY   (Japan)

^b CHIBA UNIVERSITY HOSPITAL   (Japan)

^c CHIBA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^d LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; DIAMINOPIMELIC ACID; MENAQUINONE; MYCOLIC ACID; RNA 16S;

ADULT; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BRONCHITIS; CASE REPORT; DIAGNOSTIC TEST; DNA DNA HYBRIDIZATION; EXTERNAL OTITIS; FEMALE; GENE SEQUENCE; GENOTYPE PHENOTYPE CORRELATION; GORDONIA; GORDONIA AICHIENSIS; GORDONIA JACOBAEA; GORDONIA OTITIDIS; GORDONIA SPUTI; GORDONIACEAE; HUMAN; MALE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PHYLOGENETIC TREE; PLEURA FLUID; PRIORITY JOURNAL; RNA GENE; RNA SEQUENCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; TAXONOMY;

ACTINOMYCETALES INFECTIONS; ADULT; BRONCHITIS; DNA, BACTERIAL; FEMALE; GENES, RRNA; GENOTYPE; GORDONIA BACTERIUM; HUMANS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OTITIS EXTERNA; PHENOTYPE; PHYLOGENY; PLEURAL EFFUSION; RNA, RIBOSOMAL, 16S;

ACTINOBACTERIA (CLASS); GORDONIA (ACTINOMYCETE); GORDONIA AICHIENSIS; GORDONIA JACOBAEA; GORDONIA SPUTI;

EID: 26444496648     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63282-0     Document Type: Article

References (34)

1. Arenskotter, M., Linos, A., Schumann, P., Kroppenstedt, R. M. & Steinbuchel, A. (2005). Gordonia nitida Yoon et al. 2000 is a later synonym of Gordonia alkanivorans Kummer et al. 1999. Int J Syst Evol Microbiol 55, 695-697.
2. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
3. de Miguel, T., Sieiro, C., Poza, M. & Villa, T. G. (2000). Isolation and taxonomic study of a new canthaxanthin-containing bacterium, Gordonia jacobaea MV-1 sp. nov. Int Microbiol 3, 107-111.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Goodfellow, M. (1992). The family Nocardiaceae. In The Prokaryotes, 2nd edn, pp. 1188-1213. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
6. Kageyama, A., Poonwan, N., Yazawa, K., Mikami, Y. & Nishimura, K. (2004a). Nocardia asiatica sp. nov., isolated from patients with nocardiosis in Japan and clinical specimens from Thailand. Int J Syst Evol Microbiol 54, 125-130.
7. Kageyama, A., Yazawa, K., Nishimura, K. & Mikami, Y. (2004b). Nocardia inohanensis sp. nov., Nocardia yamanashiensis sp. nov. and Nocardia niigatensis sp. nov., isolated from clinical specimens. Int J Syst Evol Microbiol 54, 563-569.
8. Kämpfer, P. & Kroppenstedt R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
9. Kim, S. B., Brown, R., Oldfield, C., Gilbert, S. C., Iliarionov, S. & Goodfellow, M. (2000). Gordonia amicalis sp. nov., a novel dibenzothiophene-desulphurizing actinomycete. Int J Syst Evol Microbiol 50, 2031-2036.
10. Kim, K. K., Lee, C. S., Kroppenstedt, R. M., Stackebrandt, E. & Lee, S. T. (2003). Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium from a wastewater-treatment bioreactor. Int J Syst Evol Microbiol 53, 1427-1433.
11. Kimura, M. & Ohta, T. (1972). On the stochastic model for estimation of mutational distance between homologous proteins. J Mol Evol 2, 87-90.
12. Klatte, S., Rainey, F. A. & Kroppenstedt, R. M. (1994). Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol 44, 769-773.
13. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 227-291. Edited by A. Dietz & D. W. Thayer. Fairfax, VA: Society for Industrial Microbiology.
14. Linos, A., Steinbuchel, A., Spröer, C. & Kroppenstedt, R. M. (1999). Gordonia polyisoprenivorans sp. nov., a rubber-degrading actinomycete isolated from an automobile tyre. Int J Syst Bacteriol 49, 1785-1791.
15. Linos, A., Berekaa, M. M., Steinbuchel, A., Kim, K. K., Spröer, C. & Kroppenstedt, R. M. (2002). Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete. Int J Syst Evol Microbiol 52, 1133-1139.
16. Maldonado, L. A., Stainsby, F. M., Ward, A. C. & Goodfellow, M. (2003). Gordonia sinesedis sp. nov., a novel soil isolate. Antonie van Leeuwenhoek 83, 75-80.
17. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr 188, 221-233.
18. Miyadoh, M. (2001). Identification procedure at the genus level. In Identification Manual of Actinomycetes, pp. 9-19. Edited by S. Miyadoh, M. Hamada, K. Hotta, T. Kudo, A. Seino, K. Suzuki & A. Yokota. Tokyo: Business Center for Academic Societies.
19. Saito, H. & Miura, K. (1983). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 1-6.
22. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
23. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1988). Evidence of phylogenetic heterogeneity within the genus Rhodococcus: revival of the genus Gordona (Tsukamura). J Gen Appl Microbiol 34, 341-348.
24. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
25. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
26. Takeuchi, M. & Hatano, K (1998). Gordonia rhizosphera sp. nov. isolated from the mangrove rhizosphere. Int J Syst Bacteriol 48, 907-912.
27. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
28. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
29. Tsukamura, M. (1971). Proposal of new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil. J Gen Microbiol 68, 15-26.
30. Tsukamura, M. (1978). Numerical classification of Rhodococcus (formerly Gordona) organisms recently isolated from sputa of patients; description of Rhodococcus sputi Tsukamura sp. nov. Int J Syst Bacteriol 28, 169-181.
31. Tsukamura, M. (1982). Numerical analysis of the taxonomy of nocardiae and rhodococci. Division of Nocardia asteroides sensu stricto into two species and descriptions of Nocardia paratuberculosis sp. nov. Tsukamura (formerly the Kyoto-I group of Tsukamura), Nocardia nova sp. nov. Tsukamura, Rhodococcus aichiensis sp. nov. Tsukamura, Rhodococcus chubuensis sp. nov. Tsukamura, and Rhodococcus obuensis sp. nov. Tsukamura. Microbiol Immunol 26, 1101-1119.
32. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
33. Xue, Y., Sun, X., Zhou, P., Liu, R., Liang, F. & Ma, Y. (2003). Gordonia paraffinivorans sp. nov., a hydrocarbon-degrading actinomycete isolated from an oil-producing well. Int J Syst Evol Microbiol 53, 1643-1646.
34. Yoon, J.-H., Lee, J. J., Kang, S.-S., Takeuchi, M., Shin, Y. K., Lee, S. T., Kang, K. H. & Park, Y.-H. (2000). Gordonia nitida sp. nov., a bacterium that degrades 3-ethylpyridine and 3-methylpyridine. Int J Syst Evol Microbiol 50, 1203-1210.