Gordonia cholesterolivorans sp. nov., a cholesterol-degrading actinomycete isolated from sewage sludge

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 5, 2009, Pages 1011-1015

  Drzyzga, Oliver ^a   Llorens, J María Navarro ^a   Fernández de las Heras, Laura ^a   García Fernández, Esther ^a   Perera, Julián ^a  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CHOLESTEROL; FATTY ACID; MYCOLIC ACID; RNA 16S; BACTERIAL DNA;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GORDONIA; GORDONIA CHOLESTEROLIVORANS; GORDONIA HYDROPHOBICA; GORDONIA SHANDONGENSIS; GORDONIA SIHWENSIS; LIPID COMPOSITION; LIPID DEGRADATION; MICROBIAL MORPHOLOGY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SLUDGE; STRAIN DIFFERENCE; TAXONOMIC RANK; BACTERIUM IDENTIFICATION; BIOREMEDIATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; RNA GENE; SEWAGE; SPECIES DIFFERENCE;

GORDONIA (ACTINOMYCETE); GORDONIA HYDROPHOBICA; GORDONIA SIHWENSIS;

BACTERIAL TYPING TECHNIQUES; BIODEGRADATION, ENVIRONMENTAL; CHOLESTEROL; DNA, BACTERIAL; FATTY ACIDS; GENES, RRNA; GENOTYPE; GORDONIA BACTERIUM; MOLECULAR SEQUENCE DATA; MYCOLIC ACIDS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; SPECIES SPECIFICITY;

EID: 67649798603     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.005777-0     Document Type: Article

References (38)

1. Arenskötter, M., Bröker, D. & Steinbüchel, A. (2004). Biology of the metabolically diverse genus Gordonia. Appl Environ Microbiol 70, 3195-3204.
2. Blaschke, A. J., Bender, J., Byington, C. L., Korgenski, K., Daly, J., Petti, C. A., Pavia, A. T. & Ampofo, K. (2007). Gordonia species: emerging pathogens in pediatric patients that are identified by 16S ribosomal RNA gene sequencing. Clin Infect Dis 45, 483-486.
3. Bruce, J. (1996). Automated system rapidly identifies and characterizes microorganisms in food. Food Technol 50, 77-81.
4. Carr, E. L., Eales, K. L. & Seviour, R. J. (2006). Substrate uptake by Gordonia amarae in activated sludge foams by FISH-MAR. Water Sci Technol 54(1), 39-45.
5. Chatterjee, S. & Dutta, T. K. (2003). Metabolism of butyl benzyl phthalate by Gordonia sp. strain MTCC 4818. Biochem Biophys Res Commun 309, 36-43.
6. Clark, C. G. (1997). Riboprinting: a general tool for the study of genetic diversity in microorganisms. J Eukaryot Microbiol 44, 277-283.
7. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
8. Goodfellow, M. & Maldonado, L. A. (2006). The families Dietziaceae, Gordoniaceae, Nocardiaceae and Tsukamurellaceae. In The Prokaryotes, 3rd edn, vol. 3, pp. 843-888. Edited by F. Dworkin, S. Falkow, K. H. Schleifer & E. Stackebrandt. New York: Springer.
9. Goodfellow, M., Alderson, G. & Chun, J. (1998). Rhodococcal systematics: problems and developments. Antonie van Leeuwenhoek 74, 3-20.
10. Goodfellow, M., Isik, K. & Yates, E. (1999). Actinomycete systematics: an unfinished synthesis. Nova Acta Leopold 312, 47-82.
11. Gorontzy, T., Drzyzga, O., Kahl, M. W., Bruns-Nagel, D., Breitung, J., von Löw, E. & Blotevogel, K. H. (1994). Microbial degradation of explosives and related compounds. Crit Rev Microbiol 20, 265-284.
12. HuB, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
13. Iida, S., Taniguchi, H., Kageyama, A., Yazawa, K., Chibana, H., Murata, S., Nomura, F., Kroppenstedt, R. M. & Mikami, Y. (2005). Gordonia otitidis sp. nov., isolated from a patient with external otitis. Int J Syst Evol Microbiol 55, 1871-1876.
14. Iwahori, K., Tokutomo, T., Imbata, N. & Fujita, M. (2001). Formation of stable foam by the cells and culture supernatant of Gordonia (Nocardia) amarae. J Biosci Bioeng 92, 77-79.
15. Kageyama, A., Iida, S., Yazawa, K., Kudo, T., Suzuki, S., Koga, T., Saito, H., Inagawa, H., Wada, A. & other authors (2006). Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan. Int J Syst Evol Microbiol 56, 1817-1821.
16. Kim, S. B., Brown, R., Oldfield, C., Gilbert, S. C. & Goodfellow, M. (1999). Gordonia desulfuricans sp. nov., a benzothiophene-desulphurizing actinomycete. Int J Syst Bacteriol 49, 1845-1851.
17. Kim, S. B., Brown, R., Oldfield, C., Gilbert, S. C., Iliarionov, S. & Goodfellow, M. (2000). Gordonia amicalis sp. nov., a dibenzothiophene-desulphurizing actinomycete. Int J Syst Evol Microbiol 50, 2031-2036.
18. Kim, K. K., Lee, C. S., Kroppenstedt, R. M., Stackebrandt, E. & Lee, S. T. (2003). Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor. Int J Syst Evol Microbiol 53, 1427-1433.
19. Kummer, C., Schumann, P. & Stackebrandt, E. (1999). Gordonia alkanivorans sp. nov., isolated from tar-contaminated soil. Int J Syst Bacteriol 49, 1513-1522.
20. Lechevalier, M. P. & Lechevalier, H. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
21. ,Lee, J. J., Rhee, S. K. & Lee, S. T. (2001). Degradation of 3-methylpyridine and 3-ethylpyridine by Gordonia nitida LE31. Appl Environ Microbiol 67, 4342-4345.
22. Le Roes, M., Goodwin, C. M. & Meyers, P. R. (2008). Gordonia lacunae sp. nov., isolated from an estuary. Syst Appl Microbiol 31, 17-23.
23. Linos, A., Steinbüchel, A., Spröer, C. & Kroppenstedt, R. M. (1999). Gordonia polyisoprenivorans sp. nov., a rubber-degrading actinomycete isolated from an automobile tyre. Int J Syst Bacteriol 49, 1785-1791.
24. ,Luo, H., Gu, Q., Xie, J., Hu, C., Liu, Z. & Huang, Y. (2007). Gordonia shandongensis sp. nov., isolated from soil in China. Int J Syst Evol Microbiol 57, 605-608.
25. Maldonado, L. A., Stainsby, F. M., Ward, A. C. & Goodfellow, M. (2003). Gordonia sinesedis sp. nov., a novel soil isolate. Antonie van Leeuwenhoek 83, 75-80.
26. Miller, L. & Berger, T. (1985). Bacterial identification by gas chromatography of whole cell fatty acids. Application note 228-241. Palo Alto, CA: Hewlett-Packard.
27. Pagilla, K. R., Sood, A. & Kim, H. (2002). Gordonia (Nocardia) amarae foaming due to biosurfactant production. Water Sci Technol 46(1-2), 519-524.
28. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R.M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
29. Shen, F. T., Goodfellow, M., Jones, A. L., Chen, Y. P., Arun, A. B., Lai, W. A., Rekha, P. D. & Young, C. C. (2006). Gordonia soli sp. nov., a novel actinomycete isolated from soil. Int J Syst Evol Microbiol 56, 2597-2601.
30. Shen, F. T., Huang, H. R., Arun, A. B., Lu, H. L., Lin, T. C., Rekha, P. D. & Young, C. C. (2007). Detection of filamentous genus Gordonia in foam samples using genus-specific primers combined with PCR-denaturing gradient gel electrophoresis analysis. Can J Microbiol 53, 768-774.
31. Soddell, J. A., Stainsby, F. M., Eales, K. L., Seviour, R. J. & Goodfellow, M. (2006). Gordonia defluvii sp. nov., an actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol 56, 2265-2269.
32. Stackebrandt, E., Smida, J. & Collins, M. D. (1988). Evidence of phylogenetic heterogeneity within the genus Rhodococcus: revival of the genus Gordona (Tsukamura). J Gen Appl Microbiol 34, 341-348.
33. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
34. Takeuchi, M. & Hatano, K. (1998). Gordonia rhizosphera sp. nov. isolated from the mangrove rhizosphere. Int J Syst Bacteriol 48, 907-912.
35. Thompson, K. T., Crocker, F. H. & Fredrickson, H. L. (2005). Mineralization of the cyclic nitramine explosive hexahydro-1,3,5-trinitro-1,3,5-triazine by Gordonia and Williamsia spp. Appl Environ Microbiol 71, 8265-8272.
36. Tsukamura, M. (1971). Proposal of a new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil. J Gen Microbiol 68, 15-26.
37. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
38. Xue, Y., Sun, X., Zhou, P., Liu, R., Liang, F. & Ma, Y. (2003). Gordonia paraffinivorans sp. nov., a hydrocarbon-degrading actinomycete isolated from an oil-producing well. Int J Syst Evol Microbiol 53, 1643-1646.