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Volumn 31, Issue 8, 2014, Pages 2108-2123

Inter- and intraspecies phylogenetic analyses reveal extensive X-Y gene conversion in the evolution of gametologous sequences of human sex chromosomes

Author keywords

human Y chromosome; recombination hotspots; sex chromosome evolution; X Y gene conversion

Indexed keywords

ARTICLE; CHIMPANZEE; CHROMOSOME ANALYSIS; CHROMOSOME MUTATION; CONTROLLED STUDY; CROSSING OVER; GENE CONVERSION; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN; INTRASPECIFIC VARIATION; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES COMPARISON; X CHROMOSOME; Y CHROMOSOME; ANIMAL; COMPARATIVE STUDY; DNA SEQUENCE; FEMALE; GENETICS; HAPLOTYPE; MALE; PAN TROGLODYTES; PHYLOGENY;

EID: 84904985815     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msu155     Document Type: Article
Times cited : (24)

References (61)
  • 1
    • 32944464614 scopus 로고    scopus 로고
    • The case of the unreliable SNP: Recurrent back-mutation of Y-chromosomal marker P25 through gene conversion
    • Adams SM, King TE, Bosch E, Jobling MA. 2006. The case of the unreliable SNP: Recurrent back-mutation of Y-chromosomal marker P25 through gene conversion. Forensic Sci Int. 159:14-20
    • (2006) Forensic Sci Int , vol.159 , pp. 14-20
    • Adams, S.M.1    King, T.E.2    Bosch, E.3    Jobling, M.A.4
  • 3
    • 84872503128 scopus 로고    scopus 로고
    • Y-chromosome evolution: Emerging insights into processes of Y-chromosome degeneration
    • Bachtrog D. 2013. Y-chromosome evolution: Emerging insights into processes of Y-chromosome degeneration. Nat Rev Genet. 14:113-124
    • (2013) Nat Rev Genet , vol.14 , pp. 113-124
    • Bachtrog, D.1
  • 6
    • 2442690342 scopus 로고    scopus 로고
    • Dynamics of a human interparalog gene conversion hotspot
    • Bosch E, Hurles ME, Navarro A, Jobling MA. 2004. Dynamics of a human interparalog gene conversion hotspot. Genome Res. 14:835-844
    • (2004) Genome Res , vol.14 , pp. 835-844
    • Bosch, E.1    Hurles, M.E.2    Navarro, A.3    Jobling, M.A.4
  • 7
    • 0141954847 scopus 로고    scopus 로고
    • The organization and evolution of the human Y chromosome
    • Charlesworth B. 2003. The organization and evolution of the human Y chromosome. Genome Biol. 4:226
    • (2003) Genome Biol , vol.4 , pp. 226
    • Charlesworth, B.1
  • 8
    • 84899968726 scopus 로고    scopus 로고
    • The evolutionary dynamics of sexually antagonistic mutations in pseudoautosomal regions of sex chromosomes
    • Charlesworth B, Jordan CY, Charlesworth D. 2014. The evolutionary dynamics of sexually antagonistic mutations in pseudoautosomal regions of sex chromosomes. Evolution 68:1339-1350
    • (2014) Evolution , vol.68 , pp. 1339-1350
    • Charlesworth, B.1    Jordan, C.Y.2    Charlesworth, D.3
  • 10
    • 24344500211 scopus 로고    scopus 로고
    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • Chimpanzee Sequencing and Analysis Consortium
    • Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87
    • (2005) Nature , vol.437 , pp. 69-87
  • 11
    • 78751662246 scopus 로고    scopus 로고
    • Gene duplication, gene conversion and the evolution of the Y chromosome
    • Connallon T, Clark AG. 2010. Gene duplication, gene conversion and the evolution of the Y chromosome. Genetics 186:277-286
    • (2010) Genetics , vol.186 , pp. 277-286
    • Connallon, T.1    Clark, A.G.2
  • 15
    • 79958787832 scopus 로고    scopus 로고
    • A revised root for the human Y chromosomal phylogenetic tree: The origin of patrilineal diversity in Africa
    • Cruciani F, Trombetta B, Massaia A, Destro-Bisol G, Sellitto D, Scozzari R. 2011. A revised root for the human Y chromosomal phylogenetic tree: The origin of patrilineal diversity in Africa. Am J Hum Genet. 88: 814-818
    • (2011) Am J Hum Genet , vol.88 , pp. 814-818
    • Cruciani, F.1    Trombetta, B.2    Massaia, A.3    Destro-Bisol, G.4    Sellitto, D.5    Scozzari, R.6
  • 16
    • 79951813599 scopus 로고    scopus 로고
    • Sex-chromosome evolution: Recent progress and the influence of male and female heterogamety
    • Ellegren H. 2011. Sex-chromosome evolution: Recent progress and the influence of male and female heterogamety. Nat Rev Genet. 12: 157-166
    • (2011) Nat Rev Genet , vol.12 , pp. 157-166
    • Ellegren, H.1
  • 17
    • 84884417635 scopus 로고    scopus 로고
    • The role of gene conversion in preserving rearrangement hotspots in the human genome
    • Fawcett JA, Innan H. 2013. The role of gene conversion in preserving rearrangement hotspots in the human genome. Trends Genet. 29: 561-568
    • (2013) Trends Genet , vol.29 , pp. 561-568
    • Fawcett, J.A.1    Innan, H.2
  • 19
    • 84880791646 scopus 로고    scopus 로고
    • Recombination dynamics of a human Y-chromosomal palindrome: Rapid GC-biased gene conversion, multi-kilobase conversion tracts, and rare inversions
    • Hallast P, Balaresque P, Bowden GR, Ballereau S, Jobling MA. 2013. Recombination dynamics of a human Y-chromosomal palindrome: Rapid GC-biased gene conversion, multi-kilobase conversion tracts, and rare inversions. PLoS Genet. 9:e1003666
    • (2013) PLoS Genet , vol.9
    • Hallast, P.1    Balaresque, P.2    Bowden, G.R.3    Ballereau, S.4    Jobling, M.A.5
  • 21
    • 8444223551 scopus 로고    scopus 로고
    • Origins of chromosomal rearrangement hotspots in the human genome: Evidence from the AZFa deletion hotspots
    • Hurles ME, Willey D, Matthews L, Hussain SS. 2004. Origins of chromosomal rearrangement hotspots in the human genome: Evidence from the AZFa deletion hotspots. Genome Biol. 5:R55
    • (2004) Genome Biol , vol.5
    • Hurles, M.E.1    Willey, D.2    Matthews, L.3    Hussain, S.S.4
  • 22
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23:254-267
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 23
    • 77954780004 scopus 로고    scopus 로고
    • Frequent gene conversion events between the X and Y homologous chromosomal regions in primates
    • Iwase M, Satta Y, Hirai H, Hirai Y, Takahata N. 2010. Frequent gene conversion events between the X and Y homologous chromosomal regions in primates. BMC Evol Biol. 10:225
    • (2010) BMC Evol Biol , vol.10 , pp. 225
    • Iwase, M.1    Satta, Y.2    Hirai, H.3    Hirai, Y.4    Takahata, N.5
  • 24
    • 0030844441 scopus 로고    scopus 로고
    • The Y chromosome in forensic analysis and paternity testing
    • Jobling MA, Pandya A, Tyler-Smith C. 1997. The Y chromosome in forensic analysis and paternity testing. Int J Legal Med. 110:118-124
    • (1997) Int J Legal Med , vol.110 , pp. 118-124
    • Jobling, M.A.1    Pandya, A.2    Tyler-Smith, C.3
  • 25
    • 84856277087 scopus 로고    scopus 로고
    • The potential for sexually antagonistic polymorphism in different genome regions
    • Jordan CY, Charlesworth D. 2012. The potential for sexually antagonistic polymorphism in different genome regions. Evolution 66: 505-516
    • (2012) Evolution , vol.66 , pp. 505-516
    • Jordan, C.Y.1    Charlesworth, D.2
  • 27
    • 84867662424 scopus 로고    scopus 로고
    • No evidence for a second evolutionary stratum during the early evolution of mammalian sex chromosomes
    • Katsura Y, Satta Y. 2012. No evidence for a second evolutionary stratum during the early evolution of mammalian sex chromosomes. PLoS One 7:e45488
    • (2012) PLoS One , vol.7
    • Katsura, Y.1    Satta, Y.2
  • 28
    • 77952299411 scopus 로고    scopus 로고
    • On the estimation of the insertion time of LTR retrotransposable elements
    • Kijima TE, Innan H. 2010. On the estimation of the insertion time of LTR retrotransposable elements. Mol Biol Evol. 27:896-904
    • (2010) Mol Biol Evol , vol.27 , pp. 896-904
    • Kijima, T.E.1    Innan, H.2
  • 29
    • 11144220903 scopus 로고    scopus 로고
    • Y chromosome polymorphisms in medicine
    • Krausz C, Quintana-Murci L, Forti G. 2004. Y chromosome polymorphisms in medicine. Ann Med. 36:573-583
    • (2004) Ann Med , vol.36 , pp. 573-583
    • Krausz, C.1    Quintana-Murci, L.2    Forti, G.3
  • 30
    • 0033615708 scopus 로고    scopus 로고
    • Four evolutionary strata on the human X chromosome
    • Lahn BT, Page DC. 1999. Four evolutionary strata on the human X chromosome. Science 286:964-967
    • (1999) Science , vol.286 , pp. 964-967
    • Lahn, B.T.1    Page, D.C.2
  • 34
    • 77958479780 scopus 로고    scopus 로고
    • Can intra-Y gene conversion oppose the degeneration of the human Y chromosome? A simulation study
    • Marais GA, Campos PR, Gordo I. 2010. Can intra-Y gene conversion oppose the degeneration of the human Y chromosome? A simulation study. Genome Biol Evol. 2:347-357
    • (2010) Genome Biol Evol , vol.2 , pp. 347-357
    • Marais, G.A.1    Campos, P.R.2    Gordo, I.3
  • 38
    • 58149157901 scopus 로고    scopus 로고
    • Duplication and gene conversion in the Drosophila melanogaster genome
    • OsaDa N, Innan H. 2008. Duplication and gene conversion in the Drosophila melanogaster genome. PLoS Genet. 4:e1000305
    • (2008) PLoS Genet , vol.4
    • OsaDa, N.1    Innan, H.2
  • 39
    • 84892521431 scopus 로고    scopus 로고
    • Detecting evolutionary strata on the human X chromosome in the absence of gametologous Y-linked sequences
    • Pandey RS, Wilson Sayres MA, Azad RK. 2013. Detecting evolutionary strata on the human X chromosome in the absence of gametologous Y-linked sequences. Genome Biol Evol. 5:1863-1871
    • (2013) Genome Biol Evol , vol.5 , pp. 1863-1871
    • Pandey, R.S.1    Wilson Sayres, M.A.2    Azad, R.K.3
  • 45
    • 67649628996 scopus 로고    scopus 로고
    • Gene conversion between the X chromosome and the male-specific region of the Y chromosome at a translocation hotspot
    • Rosser ZH, Balaresque P, Jobling MA. 2009. Gene conversion between the X chromosome and the male-specific region of the Y chromosome at a translocation hotspot. Am J Hum Genet. 85: 130-134
    • (2009) Am J Hum Genet , vol.85 , pp. 130-134
    • Rosser, Z.H.1    Balaresque, P.2    Jobling, M.A.3
  • 48
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406-4425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-4425
    • Saitou, N.1    Nei, M.2
  • 49
    • 0030828763 scopus 로고    scopus 로고
    • Abnormal X-Y interchange between a novel isolated protein kinase gene, PRKY, and its homologue, PRKX, accounts for one third of all (Y+ )XX males and (Y-)X-Y females
    • Schiebel K, Winkelmann M, Mertz A, Xu X, Page DC, Weil D, Petit C, Rappold GA. 1997. Abnormal X-Y interchange between a novel isolated protein kinase gene, PRKY, and its homologue, PRKX, accounts for one third of all (Y+ )XX males and (Y-)X-Y females. Hum Mol Genet. 6:1985-9198
    • (1997) Hum Mol Genet , vol.6 , pp. 1985-9198
    • Schiebel, K.1    Winkelmann, M.2    Mertz, A.3    Xu, X.4    Page, D.C.5    Weil, D.6    Petit, C.7    Rappold, G.A.8
  • 51
    • 84895510940 scopus 로고    scopus 로고
    • An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa
    • Scozzari R, Massaia A, Trombetta B, Bellusci G, Myres NM, Novelletto A, Cruciani F. 2014. An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa. Genome Res. 24:535-544
    • (2014) Genome Res , vol.24 , pp. 535-544
    • Scozzari, R.1    Massaia, A.2    Trombetta, B.3    Bellusci, G.4    Myres, N.M.5    Novelletto, A.6    Cruciani, F.7
  • 54
    • 12944312756 scopus 로고    scopus 로고
    • Novel gene conversion between X-Y homologues located in the non-recombining region of the Y chromosome in Felidae (Mammalia
    • Slattery JP, Sanner-Wachter L, O'Brien SJ. 2000. Novel gene conversion between X-Y homologues located in the non-recombining region of the Y chromosome in Felidae (Mammalia). Proc Natl Acad Sci U S A. 97:5307-5312
    • (2000) Proc Natl Acad Sci U S A. , vol.97 , pp. 5307-5312
    • Slattery, J.P.1    Sanner-Wachter, L.2    O'Brien, S.J.3
  • 55
    • 79251571490 scopus 로고    scopus 로고
    • A new topology of the human Y chromosome haplogroup E1b1 (E-P2) revealed through the use of newly characterized binary polymorphisms
    • Trombetta B, Cruciani F, Sellitto D, Scozzari R. 2011. A new topology of the human Y chromosome haplogroup E1b1 (E-P2) revealed through the use of newly characterized binary polymorphisms. PLoS One 6:e16073
    • (2011) PLoS One , vol.6
    • Trombetta, B.1    Cruciani, F.2    Sellitto, D.3    Scozzari, R.4
  • 57
    • 43049180910 scopus 로고    scopus 로고
    • Use of y chromosome and mitochondrial DNA population structure in tracing human migrations
    • Underhill PA, Kivisild T. 2007. Use of y chromosome and mitochondrial DNA population structure in tracing human migrations. Annu Rev Genet. 41:539-564
    • (2007) Annu Rev Genet , vol.41 , pp. 539-564
    • Underhill, P.A.1    Kivisild, T.2


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