메뉴 건너뛰기




Volumn 17, Issue 8, 2008, Pages 1127-1136

Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

EID: 41849091509     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddn002     Document Type: Article
Times cited : (93)

References (85)
  • 1
    • 31144469134 scopus 로고    scopus 로고
    • Structural variation in the human genome
    • Feuk, L., Carson, A.R. and Scherer, S.W. (2006) Structural variation in the human genome. Nat. Rev. Genet., 7, 85-97.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 85-97
    • Feuk, L.1    Carson, A.R.2    Scherer, S.W.3
  • 6
    • 0042387792 scopus 로고    scopus 로고
    • Extensive normal copy number variation of a beta-defensin antimicrobial-gene cluster
    • Hollox, E.J., Armour, J.A. and Barber, J.C. (2003) Extensive normal copy number variation of a beta-defensin antimicrobial-gene cluster. Am. J. Hum. Genet., 73, 591-600.
    • (2003) Am. J. Hum. Genet , vol.73 , pp. 591-600
    • Hollox, E.J.1    Armour, J.A.2    Barber, J.C.3
  • 8
    • 29144457296 scopus 로고    scopus 로고
    • Human defensin gene copy number polymorphisms: Comprehensive analysis of independent variation in alpha- and beta-defensin regions at 8p22-p23
    • Linzmeier, R.M. and Ganz, T. (2005) Human defensin gene copy number polymorphisms: Comprehensive analysis of independent variation in alpha- and beta-defensin regions at 8p22-p23. Genomics, 86, 423-430.
    • (2005) Genomics , vol.86 , pp. 423-430
    • Linzmeier, R.M.1    Ganz, T.2
  • 18
    • 34250841166 scopus 로고    scopus 로고
    • Gene copy-number variation and associated polymorphisms of complement component C4 in human systemic lupus erythematosus (SLE): Low copy number is a risk factor for and high copy number is a protective factor against SLE susceptibility in European Americans
    • Yang, Y., Chung, E.K., Wu, Y.L., Savelli, S.L., Nagaraja, H.N., Zhou, B., Hebert, M., Jones, K.N., Shu, Y., Kitzmiller, K. et al. (2007) Gene copy-number variation and associated polymorphisms of complement component C4 in human systemic lupus erythematosus (SLE): Low copy number is a risk factor for and high copy number is a protective factor against SLE susceptibility in European Americans. Am. J. Hum. Genet. 80, 1037-1054.
    • (2007) Am. J. Hum. Genet , vol.80 , pp. 1037-1054
    • Yang, Y.1    Chung, E.K.2    Wu, Y.L.3    Savelli, S.L.4    Nagaraja, H.N.5    Zhou, B.6    Hebert, M.7    Jones, K.N.8    Shu, Y.9    Kitzmiller, K.10
  • 22
    • 33747028785 scopus 로고    scopus 로고
    • Complex patterns of copy number variation at sites of segmental duplications: An important category of structural variation in the human genome
    • Goidts, V., Cooper, D.N., Armengol, L., Schempp, W., Conroy, J., Estivill, X., Nowak, N., Hameister, H. and Kehrer-Sawatzki, H. (2006) Complex patterns of copy number variation at sites of segmental duplications: An important category of structural variation in the human genome. Hum. Genet., 120, 270-284.
    • (2006) Hum. Genet , vol.120 , pp. 270-284
    • Goidts, V.1    Cooper, D.N.2    Armengol, L.3    Schempp, W.4    Conroy, J.5    Estivill, X.6    Nowak, N.7    Hameister, H.8    Kehrer-Sawatzki, H.9
  • 23
    • 29444450702 scopus 로고    scopus 로고
    • Common deletions and SNPs are in linkage disequilibrium in the human genome
    • Hinds, D.A., Kloek, A.P., Jen, M., Chen, X. and Frazer, K.A. (2006) Common deletions and SNPs are in linkage disequilibrium in the human genome. Nat. Genet., 38, 82-85.
    • (2006) Nat. Genet , vol.38 , pp. 82-85
    • Hinds, D.A.1    Kloek, A.P.2    Jen, M.3    Chen, X.4    Frazer, K.A.5
  • 26
    • 35748971743 scopus 로고    scopus 로고
    • Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: Implications for association studies of complex diseases
    • de Smith, A.J., Tsalenko, A., Sampas, N., Scheffer, A., Yamada, N.A., Tsang, P., Ben-Dor, A., Yakhini, Z., Ellis, R.J., Bruhn, L. et al. (2007) Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: Implications for association studies of complex diseases. Hum. Mol. Genet., 16, 2783-2794.
    • (2007) Hum. Mol. Genet , vol.16 , pp. 2783-2794
    • de Smith, A.J.1    Tsalenko, A.2    Sampas, N.3    Scheffer, A.4    Yamada, N.A.5    Tsang, P.6    Ben-Dor, A.7    Yakhini, Z.8    Ellis, R.J.9    Bruhn, L.10
  • 31
    • 38849101781 scopus 로고    scopus 로고
    • Significant gene content variation characterizes the genomes of inbred mouse strains
    • Cutler, G., Marshall, L.A., Chin, N., Baribault, H. and Kassner, P.D. (2007) Significant gene content variation characterizes the genomes of inbred mouse strains. Genome Res., 17, 1743-1754.
    • (2007) Genome Res , vol.17 , pp. 1743-1754
    • Cutler, G.1    Marshall, L.A.2    Chin, N.3    Baribault, H.4    Kassner, P.D.5
  • 32
    • 35649018206 scopus 로고    scopus 로고
    • Recurrent DNA copy number variation in the laboratory mouse
    • Egan, C.M., Sridhar, S., Wigler, M. and Hall, I.M. (2007) Recurrent DNA copy number variation in the laboratory mouse. Nat. Genet., 39 1384-1389.
    • (2007) Nat. Genet , vol.39 , pp. 1384-1389
    • Egan, C.M.1    Sridhar, S.2    Wigler, M.3    Hall, I.M.4
  • 35
    • 0034779969 scopus 로고    scopus 로고
    • SIV cardiomyopathy in non-human primates
    • Shannon, R.P. (2001) SIV cardiomyopathy in non-human primates. Trends Cardiovasc. Med., 11, 242-246.
    • (2001) Trends Cardiovasc. Med , vol.11 , pp. 242-246
    • Shannon, R.P.1
  • 36
    • 18044396141 scopus 로고    scopus 로고
    • Hormonal influences on sexually differentiated behavior in nonhuman primates
    • Wallen, K. (2005) Hormonal influences on sexually differentiated behavior in nonhuman primates. Front. Neuroendocrinol., 26, 7-26.
    • (2005) Front. Neuroendocrinol , vol.26 , pp. 7-26
    • Wallen, K.1
  • 37
    • 34247868829 scopus 로고    scopus 로고
    • Non-human primate models of inheritance vulnerability to alcohol use disorders
    • Barr, C.S. and Goldman, D. (2006) Non-human primate models of inheritance vulnerability to alcohol use disorders. Addict. Biol., 11, 374-385.
    • (2006) Addict. Biol , vol.11 , pp. 374-385
    • Barr, C.S.1    Goldman, D.2
  • 38
    • 33947181926 scopus 로고    scopus 로고
    • Understanding and exploiting dendritic cells in human immunodeficiency virus infection using the nonhuman primate model
    • Barratt-Boyes, S.M., Brown, K.N., Melhem N., Soloff, A.C. and Gleason, S.M. (2006) Understanding and exploiting dendritic cells in human immunodeficiency virus infection using the nonhuman primate model. Immunol. Res., 36, 265-274.
    • (2006) Immunol. Res , vol.36 , pp. 265-274
    • Barratt-Boyes, S.M.1    Brown, K.N.2    Melhem, N.3    Soloff, A.C.4    Gleason, S.M.5
  • 39
    • 0034283220 scopus 로고    scopus 로고
    • The chimpanzee and other non-human-primate models in HIV-1 vaccine research
    • Nath, B.M., Schumann, K.E. and Boyer, J.D.(2000) The chimpanzee and other non-human-primate models in HIV-1 vaccine research. Trends Microbiol., 8, 426-431.
    • (2000) Trends Microbiol , vol.8 , pp. 426-431
    • Nath, B.M.1    Schumann, K.E.2    Boyer, J.D.3
  • 41
    • 0037351987 scopus 로고    scopus 로고
    • Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization
    • Locke, D.P., Segraves, R., Carbone, L., Archidiacono, N., Albertson, D.G., Pinkel, D. and Eichler, E. E. (2003) Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Res., 13, 347-357.
    • (2003) Genome Res , vol.13 , pp. 347-357
    • Locke, D.P.1    Segraves, R.2    Carbone, L.3    Archidiacono, N.4    Albertson, D.G.5    Pinkel, D.6    Eichler, E.E.7
  • 44
  • 45
    • 32044440064 scopus 로고    scopus 로고
    • Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla
    • Wilson, G.M., Flibotte, S., Missirlis, P.I., Marra, M.A., Jones, S., Thornton, K., Clark, A.G. and Holt, R.A. (2006) Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla. Genome Res., 16, 173-181.
    • (2006) Genome Res , vol.16 , pp. 173-181
    • Wilson, G.M.1    Flibotte, S.2    Missirlis, P.I.3    Marra, M.A.4    Jones, S.5    Thornton, K.6    Clark, A.G.7    Holt, R.A.8
  • 47
    • 34247390534 scopus 로고    scopus 로고
    • Human-specific changes of genome structure detected by genomic triangulation
    • Harris, R.A., Rogers, J. and Milosavljevic, A. (2007) Human-specific changes of genome structure detected by genomic triangulation. Science, 316, 235-237.
    • (2007) Science , vol.316 , pp. 235-237
    • Harris, R.A.1    Rogers, J.2    Milosavljevic, A.3
  • 49
    • 0034831138 scopus 로고    scopus 로고
    • Segmental duplications: Organization and impact within the current human genome project assembly
    • Bailey, J.A., Yavor, A.M., Massa, H.F., Trask, B.J. and Eichler, E.E. (2001) Segmental duplications: Organization and impact within the current human genome project assembly. Genome Res., 11, 1005-1017.
    • (2001) Genome Res , vol.11 , pp. 1005-1017
    • Bailey, J.A.1    Yavor, A.M.2    Massa, H.F.3    Trask, B.J.4    Eichler, E.E.5
  • 50
    • 0036468807 scopus 로고    scopus 로고
    • Genome architecture, rearrangements and genomic disorders
    • Stankiewicz, P. and Lupski, J.R. (2002) Genome architecture, rearrangements and genomic disorders. Trends Genet., 18, 74-82.
    • (2002) Trends Genet , vol.18 , pp. 74-82
    • Stankiewicz, P.1    Lupski, J.R.2
  • 51
    • 33745373606 scopus 로고    scopus 로고
    • Primate segmental duplications: Crucibles of evolution, diversity and disease
    • Bailey, J.A. and Eichler, E.E. (2006) Primate segmental duplications: crucibles of evolution, diversity and disease. Nat. Rev. Genet., 7, 552-564.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 552-564
    • Bailey, J.A.1    Eichler, E.E.2
  • 53
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • Kumar, S. and Hedges, S.B. (1998) A molecular timescale for vertebrate evolution. Nature, 392, 917-920.
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 54
    • 10344241529 scopus 로고    scopus 로고
    • Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence
    • Steiper, M.E., Young, N.M. and Sukarna, T.Y. (2004) Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence. Proc. Natl. Acad. Sci. USA, 101, 17021-17026.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 17021-17026
    • Steiper, M.E.1    Young, N.M.2    Sukarna, T.Y.3
  • 55
    • 34547395282 scopus 로고    scopus 로고
    • Processes of de novo duplication of human {alpha}-globin genes
    • Lam, K.W. and Jeffreys, A.J. (2007) Processes of de novo duplication of human {alpha}-globin genes. Proc. Natl. Acad. Sci. USA, 104, 10950-10955.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 10950-10955
    • Lam, K.W.1    Jeffreys, A.J.2
  • 56
    • 0031972093 scopus 로고    scopus 로고
    • Human meiotic recombination products revealed by sequencing a hotspot for homologous strand exchange in multiple HNPP deletion patients
    • Reiter, L.T., Hastings, P.J., Nelis, E., De Jonghe, P., Van Broeckhoven, C. and Lupski, J.R. (1998) Human meiotic recombination products revealed by sequencing a hotspot for homologous strand exchange in multiple HNPP deletion patients. Am. J. Hum. Genet., 62, 1023-1033.
    • (1998) Am. J. Hum. Genet , vol.62 , pp. 1023-1033
    • Reiter, L.T.1    Hastings, P.J.2    Nelis, E.3    De Jonghe, P.4    Van Broeckhoven, C.5    Lupski, J.R.6
  • 60
    • 34347354302 scopus 로고    scopus 로고
    • Mutational and selective effects on copy-number variants in the human genome
    • Cooper, G.M., Nickerson, D.A. and Eichler, E.E. (2007) Mutational and selective effects on copy-number variants in the human genome. Nat. Genet., 39, S22-S29.
    • (2007) Nat. Genet , vol.39
    • Cooper, G.M.1    Nickerson, D.A.2    Eichler, E.E.3
  • 61
    • 33749043929 scopus 로고    scopus 로고
    • Genomic rearrangements and gene copy-number alterations as a cause of nervous system disorders
    • Lee, I.A. and Lupski, J.R. (2006) Genomic rearrangements and gene copy-number alterations as a cause of nervous system disorders. Neuron, 52, 103-121.
    • (2006) Neuron , vol.52 , pp. 103-121
    • Lee, I.A.1    Lupski, J.R.2
  • 62
    • 4544279029 scopus 로고    scopus 로고
    • Culture of Mycobacterium avium subspecies paratuberculosis from the blood of patients with Crohn's disease
    • Naser, S.A., Ghobrial, G., Romero, C. and Valentine, J.F. (2004) Culture of Mycobacterium avium subspecies paratuberculosis from the blood of patients with Crohn's disease. Lancet, 364, 1039-1044.
    • (2004) Lancet , vol.364 , pp. 1039-1044
    • Naser, S.A.1    Ghobrial, G.2    Romero, C.3    Valentine, J.F.4
  • 64
    • 1542513868 scopus 로고    scopus 로고
    • Human beta-defensins 2 and 3 demonstrate strain-selective activity against oral microorganisms
    • Joly, S., Maze, C, McCray, P.B., Jr and Guthmiller, J.M. (2004) Human beta-defensins 2 and 3 demonstrate strain-selective activity against oral microorganisms. J. Clin. Microbiol., 42, 1024-1029.
    • (2004) J. Clin. Microbiol , vol.42 , pp. 1024-1029
    • Joly, S.1    Maze, C.2    McCray Jr, P.B.3    Guthmiller, J.M.4
  • 65
    • 0041386350 scopus 로고    scopus 로고
    • Polymorphically duplicated genes: Their relevance to phenotypic variation in humans
    • Buckland, P.R. (2003) Polymorphically duplicated genes: Their relevance to phenotypic variation in humans. Ann. Med., 35, 308-315.
    • (2003) Ann. Med , vol.35 , pp. 308-315
    • Buckland, P.R.1
  • 66
    • 0028556582 scopus 로고
    • Human CYP2A6 activation of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK): Mutational specificity in the gpt gene of AS52 cells
    • Tiano, H.-F., Wang, R.L., Hosokawa, M., Crespi, C., Tindall, K.R. and Langenbach, R. (1994) Human CYP2A6 activation of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK): Mutational specificity in the gpt gene of AS52 cells. Carcinogenesis, 15 2859-2866.
    • (1994) Carcinogenesis , vol.15 , pp. 2859-2866
    • Tiano, H.-F.1    Wang, R.L.2    Hosokawa, M.3    Crespi, C.4    Tindall, K.R.5    Langenbach, R.6
  • 67
    • 0030885491 scopus 로고    scopus 로고
    • A major role for CYP2A6 in nicotine C-oxidation by human liver microsomes
    • Messina, E.S., Tyndale, R.F. and Sellers, E.M. (1997) A major role for CYP2A6 in nicotine C-oxidation by human liver microsomes. J. Pharmacol. Exp. Ther., 282, 1608-1614.
    • (1997) J. Pharmacol. Exp. Ther , vol.282 , pp. 1608-1614
    • Messina, E.S.1    Tyndale, R.F.2    Sellers, E.M.3
  • 70
    • 0032786632 scopus 로고    scopus 로고
    • Genetic polymorphism of CYP2A6 in relation to cancer
    • Kamataki, T., Nunoya, K., Sakai, Y., Kushida, H. and Fujita, K. (1999) Genetic polymorphism of CYP2A6 in relation to cancer. Mutat. Res., 428, 125-130.
    • (1999) Mutat. Res , vol.428 , pp. 125-130
    • Kamataki, T.1    Nunoya, K.2    Sakai, Y.3    Kushida, H.4    Fujita, K.5
  • 72
    • 0033940293 scopus 로고    scopus 로고
    • Mimicking gene defects to treat drug dependence
    • Sellers, E.M. and Tyndale, R.F. (2000) Mimicking gene defects to treat drug dependence. Ann. N. Y. Acad. Sci., 909, 233-246.
    • (2000) Ann. N. Y. Acad. Sci , vol.909 , pp. 233-246
    • Sellers, E.M.1    Tyndale, R.F.2
  • 73
    • 36148976077 scopus 로고    scopus 로고
    • Influence of cytochrome P450 polymorphisms on drug therapies: Pharmacogenctic, pharmacoepigenetic and clinical aspects
    • Ingelman-Sundberg, M., Sim, S.C., Gomez, A. and Rodriguez-Antona, C. (2007) Influence of cytochrome P450 polymorphisms on drug therapies: Pharmacogenctic, pharmacoepigenetic and clinical aspects. Pharmacol. Ther, 116, 496-526.
    • (2007) Pharmacol. Ther , vol.116 , pp. 496-526
    • Ingelman-Sundberg, M.1    Sim, S.C.2    Gomez, A.3    Rodriguez-Antona, C.4
  • 74
    • 34347353237 scopus 로고    scopus 로고
    • Copy-number variation and association studies of human disease
    • McCarroll, S.A. and Altshuler, D.M. (2007) Copy-number variation and association studies of human disease. Nat. Genet., 39, S37-S42.
    • (2007) Nat. Genet , vol.39
    • McCarroll, S.A.1    Altshuler, D.M.2
  • 75
    • 19844365733 scopus 로고    scopus 로고
    • Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
    • Gilad, Y., Rifkin, S.A., Bertone, P., Gerstein, M. and White, K.P. (2005) Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res., 15, 674-680.
    • (2005) Genome Res , vol.15 , pp. 674-680
    • Gilad, Y.1    Rifkin, S.A.2    Bertone, P.3    Gerstein, M.4    White, K.P.5
  • 78
    • 0028282086 scopus 로고
    • Expansion and contraction of rhesus macaque DRB regions by duplication and deletion
    • Slierendregt, B.L., Otting, N., van Besouw, N., Jonker, M. and Bontrop, R.E. (1994) Expansion and contraction of rhesus macaque DRB regions by duplication and deletion. J. Immunol., 152, 2298-2307.
    • (1994) J. Immunol , vol.152 , pp. 2298-2307
    • Slierendregt, B.L.1    Otting, N.2    van Besouw, N.3    Jonker, M.4    Bontrop, R.E.5
  • 83
    • 0037508573 scopus 로고    scopus 로고
    • Human uridine diphosphate-glucuronosylbunsferase UGT2B7 conjugates mineralocorticoid and glucocorticoid metabolites
    • Girard, C., Barbier, O., Veilleux, El-Alfy, M. and Belanger, A. (2003) Human uridine diphosphate-glucuronosylbunsferase UGT2B7 conjugates mineralocorticoid and glucocorticoid metabolites. Endocrinola, 144, 2659-2668.
    • (2003) Endocrinola , vol.144 , pp. 2659-2668
    • Girard, C.1    Barbier, O.2    Veilleux3    El-Alfy, M.4    Belanger, A.5
  • 85
    • 33846230114 scopus 로고    scopus 로고
    • Genetic susceptibility to diclofenac-induced hepatotoxicity: Contribution of UGT2B7, CYP2C8, and ABCC2 genotypes
    • Daly, A.K., Aithal, G.P., Leathart, J.B., Swainsbury, P.A., Dang, T.S. and Day, C.P. (2007) Genetic susceptibility to diclofenac-induced hepatotoxicity: Contribution of UGT2B7, CYP2C8, and ABCC2 genotypes. Gastroenterology, 132, 272-281.
    • (2007) Gastroenterology , vol.132 , pp. 272-281
    • Daly, A.K.1    Aithal, G.P.2    Leathart, J.B.3    Swainsbury, P.A.4    Dang, T.S.5    Day, C.P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.