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Volumn 23, Issue 2, 2013, Pages 388-395

A calibrated human Y-chromosomal phylogeny based on resequencing

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ARTICLE; ASIA; EUROPE; GENE SEQUENCE; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; MALE; MUTATION RATE; NEOLITHIC; PALEOLITHIC; PHYLOGENETIC TREE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH ASIA; WESTERN HEMISPHERE; Y CHROMOSOME; Y CHROMOSOME LINKAGE;

EID: 84868692234     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.143198.112     Document Type: Article
Times cited : (115)

References (50)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium
    • The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 3
    • 0033994020 scopus 로고    scopus 로고
    • Inference from gene trees in a subdivided population
    • Bahlo M, Griffiths RC. 2000. Inference from gene trees in a subdivided population. Theor Popul Biol 57: 79-95.
    • (2000) Theor Popul Biol , vol.57 , pp. 79-95
    • Bahlo, M.1    Griffiths, R.C.2
  • 8
    • 0023163377 scopus 로고
    • Mitochondrial dna and human evolution
    • Cann RL, Stoneking M, Wilson AC. 1987. Mitochondrial DNA and human evolution. Nature 325: 31-36.
    • (1987) Nature , vol.325 , pp. 31-36
    • Cann, R.L.1    Stoneking, M.2    Wilson, A.C.3
  • 10
    • 73949098544 scopus 로고    scopus 로고
    • Y chromosome diversity, human expansion, drift, and cultural evolution
    • Chiaroni J, Underhill PA, Cavalli-Sforza LL. 2009. Y chromosome diversity, human expansion, drift, and cultural evolution. Proc Natl Acad Sci 106: 20174-20179.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 20174-20179
    • Chiaroni, J.1    Underhill, P.A.2    Cavalli-Sforza, L.L.3
  • 11
    • 52249088182 scopus 로고    scopus 로고
    • Recurrent mutation in snps within y chromosome e3b (e-m215) haplogroup: A rebuttal
    • Cruciani F, Trombetta B, Novelletto A, Scozzari R. 2008. Recurrent mutation in SNPs within Y chromosome E3b (E-M215) haplogroup: A rebuttal. Am J Hum Biol 20: 614-616.
    • (2008) Am J Hum Biol , vol.20 , pp. 614-616
    • Cruciani, F.1    Trombetta, B.2    Novelletto, A.3    Scozzari, R.4
  • 13
    • 79958787832 scopus 로고    scopus 로고
    • A revised root for the human y chromosomal phylogenetic tree: The origin of patrilineal diversity in africa
    • Cruciani F, Trombetta B, Massaia A, Destro-Bisol G, Sellitto D, Scozzari R. 2011. A revised root for the human Y chromosomal phylogenetic tree: The origin of patrilineal diversity in Africa. Am J Hum Genet 88: 814-818.
    • (2011) Am J Hum Genet , vol.88 , pp. 814-818
    • Cruciani, F.1    Trombetta, B.2    Massaia, A.3    Destro-Bisol, G.4    Sellitto, D.5    Scozzari, R.6
  • 14
    • 82255163385 scopus 로고    scopus 로고
    • Y-chromosome haplogroup diversity in the sub-himalayan terai and duars populations of east india
    • Debnath M, Palanichamy MG, Mitra B, Jin JQ, Chaudhuri TK, Zhang YP. 2011. Y-chromosome haplogroup diversity in the sub-Himalayan Terai and Duars populations of East India. J Hum Genet 56: 765-771.
    • (2011) J Hum Genet , vol.56 , pp. 765-771
    • Debnath, M.1    Palanichamy, M.G.2    Mitra, B.3    Jin, J.Q.4    Chaudhuri, T.K.5    Zhang, Y.P.6
  • 16
  • 17
    • 0029794184 scopus 로고    scopus 로고
    • Origin and evolution of native american mtdna variation: A reappraisal
    • Forster P, Harding R, Torroni A, Bandelt HJ. 1996. Origin and evolution of Native American mtDNA variation: A reappraisal. Am J Hum Genet 59: 935-945.
    • (1996) Am J Hum Genet , vol.59 , pp. 935-945
    • Forster, P.1    Harding, R.2    Torroni, A.3    Bandelt, H.J.4
  • 19
    • 79953715693 scopus 로고    scopus 로고
    • Improving the assessment of the outcome of nonsynonymous snvs with a consensus deleteriousness score, condel
    • Gonzalez-Perez A, Lopez-Bigas N. 2011. Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel. Am J Hum Genet 88: 440-449.
    • (2011) Am J Hum Genet , vol.88 , pp. 440-449
    • Gonzalez-Perez, A.1    Lopez-Bigas, N.2
  • 21
    • 0028885859 scopus 로고
    • A recent common ancestry for human y chromosomes
    • Hammer MF. 1995. A recent common ancestry for human Y chromosomes. Nature 378: 376-378.
    • (1995) Nature , vol.378 , pp. 376-378
    • Hammer, M.F.1
  • 23
    • 0042766533 scopus 로고    scopus 로고
    • The human y chromosome: An evolutionary marker comes of age
    • Jobling MA, Tyler-Smith C. 2003. The human Y chromosome: An evolutionary marker comes of age. Nat Rev Genet 4: 598-612.
    • (2003) Nat Rev Genet , vol.4 , pp. 598-612
    • Jobling, M.A.1    Tyler-Smith, C.2
  • 26
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short dna sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 28
    • 79961153191 scopus 로고    scopus 로고
    • Increased resolution of y chromosome haplogroup t defines relationships among populations of the near east europe and africa
    • Mendez FL, Karafet TM, Krahn T, Ostrer H, Soodyall H, Hammer MF. 2011. Increased resolution of Y chromosome haplogroup T defines relationships among populations of the Near East, Europe, and Africa. Hum Biol 83: 39-53.
    • (2011) Hum Biol , vol.83 , pp. 39-53
    • Mendez, F.L.1    Karafet, T.M.2    Krahn, T.3    Ostrer, H.4    Soodyall, H.5    Hammer, M.F.6
  • 30
    • 0025103688 scopus 로고
    • Thermoluminescence dating of a 50,000-year-old human occupation site in northern australia
    • Roberts RG, Jones R, Smith MA. 1990. Thermoluminescence dating of a 50,000-year-old human occupation site in northern Australia. Nature 345: 153-156.
    • (1990) Nature , vol.345 , pp. 153-156
    • Roberts, R.G.1    Jones, R.2    Smith, M.A.3
  • 31
    • 71449099576 scopus 로고    scopus 로고
    • Remarkably little variation in proteins encoded by the y chromosome's single-copy genes, implying effective purifying selection
    • Rozen S, Marszalek JD, Alagappan RK, Skaletsky H, Page DC. 2009. Remarkably little variation in proteins encoded by the Y chromosome's single-copy genes, implying effective purifying selection. Am J Hum Genet 85: 923-928.
    • (2009) Am J Hum Genet , vol.85 , pp. 923-928
    • Rozen, S.1    Marszalek, J.D.2    Alagappan, R.K.3    Skaletsky, H.4    Page, D.C.5
  • 32
    • 0033842913 scopus 로고    scopus 로고
    • Mtdna variation among greenland eskimos: The edge of the beringian expansion
    • Saillard J, Forster P, Lynnerup N, Bandelt HJ, Norby S. 2000. mtDNA variation among Greenland Eskimos: The edge of the Beringian expansion. Am J Hum Genet 67: 718-726.
    • (2000) Am J Hum Genet , vol.67 , pp. 718-726
    • Saillard, J.1    Forster, P.2    Lynnerup, N.3    Bandelt, H.J.4    Norby, S.5
  • 39
    • 67149134679 scopus 로고    scopus 로고
    • Improved resolution haplogroup g phylogeny in the y chromosome, revealed by a set of newly characterized snps
    • doi: 10.1371/journal.pone.0005792
    • Sims LM, Garvey D, Ballantyne J. 2009. Improved resolution haplogroup G phylogeny in the Y chromosome, revealed by a set of newly characterized SNPs. PLoS ONE 4: e5792. doi: 10.1371/journal.pone.0005792.
    • (2009) PLoS ONE , vol.4
    • Sims, L.M.1    Garvey, D.2    Ballantyne, J.3
  • 42
    • 79251571490 scopus 로고    scopus 로고
    • A new topology of the human y chromosome haplogroup e1b1 (e-p2) revealed through the use of newly characterized binary polymorphisms
    • doi: 10.1371/journal.pone.0016073
    • Trombetta B, Cruciani F, Sellitto D, Scozzari R. 2011. A new topology of the human Y chromosome haplogroup E1b1 (E-P2) revealed through the use of newly characterized binary polymorphisms. PLoS ONE 6: e16073. doi: 10.1371/journal.pone.0016073.
    • (2011) PLoS ONE , vol.6
    • Trombetta, B.1    Cruciani, F.2    Sellitto, D.3    Scozzari, R.4
  • 43
    • 61449236482 scopus 로고    scopus 로고
    • The will-o'-the-wisp of genetics: Hunting for the azoospermia factor gene
    • Tyler-Smith C, Krausz C. 2009. The will-o'-the-wisp of genetics: Hunting for the azoospermia factor gene. N Engl J Med 360: 925-927.
    • (2009) N Engl J Med , vol.360 , pp. 925-927
    • Tyler-Smith, C.1    Krausz, C.2
  • 47
    • 59949096873 scopus 로고    scopus 로고
    • Ensemblcompara genetrees: Complete, duplication-aware phylogenetic trees in vertebrates
    • Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. 2009. EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. Genome Res 19: 327-335.
    • (2009) Genome Res , vol.19 , pp. 327-335
    • Vilella, A.J.1    Severin, J.2    Ureta-Vidal, A.3    Heng, L.4    Durbin, R.5    Birney, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.