Frequent gene conversion events between the X and y homologous chromosomal regions in primates

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  Iwase, Mineyo ^a   Satta, Yoko ^a   Hirai, Hirohisa ^b   Hirai, Yuriko ^b   Takahata, Naoyuki ^a  

^a GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

^b KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME; EVOLUTIONARY BIOLOGY; GENETIC ANALYSIS; HUMAN EVOLUTION; PHYLOGENETICS; PRIMATE; SEX DETERMINATION;

CATARRHINI; CERCOPITHECIDAE; HOMO; HYLOBATES LAR; MAMMALIA; PAN; PLATYRRHINI; PRIMATES;

ANIMAL; ARTICLE; DNA SEQUENCE; GENE CONVERSION; GENETICS; HUMAN; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PRIMATE; X CHROMOSOME; Y CHROMOSOME;

ANIMALS; BASE SEQUENCE; EVOLUTION, MOLECULAR; GENE CONVERSION; HUMANS; MOLECULAR SEQUENCE DATA; PRIMATES; SEQUENCE ANALYSIS, DNA; X CHROMOSOME; Y CHROMOSOME;

EID: 77954780004     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-225     Document Type: Article

References (45)

1. Sex Chromosome and Sex Linked Genes. S Ohno, Springer-Verlag, Berlin 1967
2. The rise and fall of SRY. JA Graves, Trends Genet 2002 18 259 264 10.1016/S0168-9525(02)02666-5 12047951
3. Linkage modifications and sex difference in recombination. M Nei, Genetics 1969 63 681 699 5399255
4. Evolution on the X chromosome: unusual patterns and processes. B Vicoso B Charlesworth, Nat Rev Genet 2006 7 645 653 10.1038/nrg1914 16847464
5. Sex chromosome specialization and degeneration in mammals. JA Graves, Cell 2006 124 901 914 10.1016/j.cell.2006.02.024 16530039
6. Four evolutionary strata on the human X chromosome. BT Lahn DC Page, Science 1999 286 964 967 10.1126/science.286.5441.964 10542153
7. The amelogenin loci span an ancient pseudoautosomal boundary in diverse mammalian species. M Iwase Y Satta Y Hirai H Hirai H Imai N Takahata, Proc Natl Acad Sci USA 2003 100 5258 5263 10.1073/pnas.0635848100 12672962
8. The DNA sequence of the human X chromosome. MT Ross DV Grafham AJ Coffey S Scherer K McLay D Muzny M Platzer GR Howell C Burrows CP Bird, et al. Nature 2005 434 325 337 10.1038/nature03440 15772651
9. Kallmann syndrome: towards molecular pathogenesis. JP Hardelin, Mol Cell Endocrinol 2001 179 75 81 10.1016/S0303-7207(01)00462-2 11420131
10. Loss-of-function mutations in FGFR1 cause autosomal dominant Kallmann syndrome. C Dodé J Levilliers JM Dupont A De Paepe N Le D N Soussi-Yanicostas RS Coimbra S Delmaghani S Compain-Nouaille F Baverel C Pcheux D Le Tessier C Cruaud M Delpech F Speleman S Vermeulen A Amalfitano Y Bachelot P Bouchard S Cabrol JC Carel H Delemarre-van de Waal B Goulet-Salmon ML Kottler O Richard F Sanchez-Franco R Saura J Young C Petit JP Hardelin, Nat Genet 2003 33 463 465 10.1038/ng1122 12627230 (Pubitemid 36390006)
11. Kallmann's syndrome: molecular pathogenesis. Y Hu F Tanriverdi GS MacColl PM Bouloux, Int J Biochem Cell Biol 2003 35 1157 62 10.1016/S1357-2725(02) 00395-3 12757752
12. Cross-talk of anosmin-1, the protein implicated in X-linked Kallmann's syndrome, with heparan sulphate and urokinase-type plasminogen activator. Y Hu D Gonzlez-Martínez SH Kim PM Bouloux, Biochem J 2004 384 495 505 10.1042/BJ20041078 15324302
13. Anosmin-1 underlying the X chromosome-linked Kallmann syndrome is an adhesion molecule that can modulate neurite growth in a cell-type specific manner. N Soussi-Yanicostas C Faivre-Sarrailh JP Hardelin J Levilliers G Rougon C Petit, J Cell Sci 1998 111 2953 2965 9730987
14. Expression of the KAL gene in multiple neuronal sites during chicken development. R Legouis CA Lievre M Leibovici F Lapointe C Petit, Proc Natl Acad Sci USA 1993 90 2461 2465 10.1073/pnas.90.6.2461 8460158
15. The Kallmann syndrome gene homolog in C. elegans is involved in epidermal morphogenesis and neurite branching. EI Rugarli E Di Schiavi MA Hilliard S Arbucci C Ghezzi A Facciolli G Coppola A Ballabio P Bazzicalupo, Development 2002 129 1283 1294 11874923
16. Characterization of the two zebrafish orthologues of the KAL-1 gene underlying X chromosome-linked Kallmann syndrome. O Ardouin R Legouis L Fasano B David-Watine H Korn J Hardelin C Petit, Mech Dev 2000 90 89 94 10.1016/S0925-4773(99)00222-1 10585565
17. Anosmin-1, defective in the X-linked form of Kallmann syndrome, promotes axonal branch formation from olfactory bulb output neurons. N Soussi-Yanicostas F de Castro AK Julliard I Perfettini A Chédotal C Petit, Cell 2002 109 217 228 10.1016/S0092-8674(02)00713-4 12007408
18. Heparan sulfate proteoglycan-dependent induction of axon branching and axon misrouting by the Kallmann syndrome gene kal-1. HE Bulow KL Berry LH Topper E Peles O Hobert, Proc Natl Acad Sci USA 2002 99 6346 6351 10.1073/pnas. 092128099 11983919
19. Anosmin-1 immunoreactivity during embryogenesis in a primitive eutherian mammal. TL Dellovade JP Hardelin N Soussi-Yanicostas DW Pfaff M Schwanzel-Fukuda C Petit, Brain Res Dev Brain Res 2003 140 157 167 10.1016/S0165-3806(02)00544-8 12586422
20. Ontogeny of GnRH and olfactory neuronal systems in man: novel insights from the investigation of inherited forms of Kallmann's syndrome. D Gonzalez-Martinez Y Hu PM Bouloux, Front Neuroendocrinol 2004 25 108 130 10.1016/j.yfrne.2004.06.001 15571757
21. The product of X-linked Kallmann's syndrome gene (KAL1) affects the migratory activity of gonadotropin-releasing hormone (GnRH)-producing neurons. A Cariboni F Pimpinelli S Colamarino R Zaninetti M Piccolella C Rumio F Piva EI Rugarli R Maggi, Hum Mol Genet 2004 13 2781 2791 10.1093/hmg/ddh309 15471890
22. Kallmann syndrome gene on the X and Y chromosomes: implications for evolutionary divergence of human sex chromosomes. B Incerti S Guioli A Pragliola E Zanaria G Borsani R Tonlorenzi B Bardoni B Franco D Wheeler A Ballabio, et al. Nat Genet 1992 2 311 314 10.1038/ng1292-311 1303285
23. Structure of the X-linked Kallmann syndrome gene and its homologous pseudogene on the Y chromosome. I del Castillo M Cohen-Salmon S Blanchard G Lutfalla C Petit, Nat Genet 1992 2 305 310 10.1038/ng1292-305 1303284
24. A human sex-chromosomal gene family expressed in male germ cells and encoding variably charged proteins. BT Lahn DC Page, Mol Genet 2000 9 311 319
25. The origin and evolution of human ampliconic gene families and ampliconic structure. BK Bhowmick Y Satta N Takahata, Genome Res 2007 4 441 450 10.1101/gr.5734907 (Pubitemid 46556448)
26. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. H Skaletsky T Kuroda-Kawaguchi PJ Minx HS Cordum L Hillier LG Brown S Repping T Pyntikova J Ali T Bieri A Chinwalla A Delehaunty K Delehaunty H Du G Fewell L Fulton R Fulton T Graves SF Hou P Latrielle S Leonard E Mardis R Maupin J McPherson T Miner W Nash C Nguyen P Ozersky K Pepin S Rock T Rohlfing K Scott B Schultz C Strong A Tin-Wollam SP Yang RH Waterston RK Wilson S Rozen DC Page, Nature 2003 423 825 837 10.1038/nature01722 12815422
27. Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. S Rozen H Skaletsky JD Marszalek PJ Minx HS Cordum RH Waterston RK Wilson DC Page, Nature 2003 423 873 876 10.1038/nature01723 12815433
28. Male-driven molecular evolution: a model and nucleotide sequence analysis. T Miyata H Hayashida K Kuma K Mitsuyasu T Yasunaga, Cold Spring Harbor Symp Quant Biol 1987 52 863 867 3454295
29. Testing multiregionality of modern human origins. N Takahata SH Lee Y Satta, Mol Biol Evol 2001 18 172 183 11158376
30. Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination. M Song S Boissinot, Gene 2007 390 206 213 10.1016/j.gene.2006.09.033 17134851
31. Crossover and noncrossover pathways in mouse meiosis. H Guillon F Baudat C Grey RM Liskay B de Massy, Mol Cell 2005 20 563 573 10.1016/j.molcel.2005.09. 021 16307920
32. Interchromosomal crossover in human cells is associated with long gene conversion tracts. EA Neuwirth M Honma AJ Grosovsky, Mol Cell Biol 2007 27 5261 5274 10.1128/MCB.01852-06 17515608
33. A double-strand break in a chromosomal LINE element can be repaired by gene conversion with various endogenous LINE elements in mouse cells. A Tremblay M Jasin P Chartrand, Mol Cell Biol 2000 20 54 60 10.1128/MCB.20.1.54-60.2000 10594008
34. Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease. B Burwinkel MW Kilimann, J Mol Biol 1998 277 513 517 10.1006/jmbi.1998.1641 9533876
35. LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis. Y Segal B Peissel A Renieri M de Marchi A Ballabio Y Pei J Zhou, Am J Hum Genet 1999 64 62 69 10.1086/302213 9915944
36. L1 recombination-associated deletions generate human genomic variation. K Han J Lee TJ Meyer P Remedios L Goodwin MA Batzer, Proc Natl Acad Sci USA 2008 105 19033 19034 10.1073/pnas.0810202105 19057007
37. Gene conversion: mechanisms, evolution and human disease. JM Chen DN Cooper N Chuzhanova C Férec GP Patrinos, Nat Rev Genet 2007 8 762 775 10.1038/nrg2193 17846636
38. Kallmann syndrome due to a translocation resulting in an X/Y fusion gene. S Guioli B Incerti E Zanaria B Bardoni B Franco K Taylor A Ballabio G Camerino, Nat Genet 1992 1 337 340 10.1038/ng0892-337 1302031
39. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. EL Sonnhammer R Durbin, Gene 1995 167 C1 10 10.1016/0378-1119(95)00714-8 8566757
40. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1995 22 4673 4680 10.1093/nar/22.22.4673
41. The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou M Nei, Mol Biol Evol 1987 4 406 425 3447015
42. Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree. J Sourdis M Nei, Mol Biol Evol 1988 5 298 311 3386530
43. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. K Tamura J Dudley M Nei S Kumar, Mol Biol Evol 2007 24 1596 1599 10.1093/molbev/msm092 17488738
44. Cytogenetic differentiation of two sympatric tree shrew taxa found in the southern part of the Isthmus of Kra. H Hirai Y Hirai Y Kawamoto H Endo J Kimura W Rerkamnuaychoke, Chromosome Res 2002 10 313 327 10.1023/A:1016523909096 12199145
45. FISH techniques for constructing physical maps on schistosome chromosomes. H Hirai PT LoVerde, Parasitol Today 1995 11 310 314 10.1016/0169-4758(95)80048-4 15275332