-
1
-
-
84872519378
-
Hybridization and speciation
-
Abbott R., Albach D., Ansell S., Arntzen J.W., Baird S.J.E., Bierne N., Boughman J., Brelsford A., Buerkle C.A., Buggs R., et al. Hybridization and speciation. J. Evol. Biol. 2013, 26:229-246.
-
(2013)
J. Evol. Biol.
, vol.26
, pp. 229-246
-
-
Abbott, R.1
Albach, D.2
Ansell, S.3
Arntzen, J.W.4
Baird, S.J.E.5
Bierne, N.6
Boughman, J.7
Brelsford, A.8
Buerkle, C.A.9
Buggs, R.10
-
2
-
-
0034727107
-
An SNP map of the human genome generated by reduced representation shotgun sequencing
-
Altshuler D., Pollara V.J., Cowles C.R., Van Etten W.J., Baldwin J., Linton L., Lander E.S. An SNP map of the human genome generated by reduced representation shotgun sequencing. Nature 2000, 407:513-516.
-
(2000)
Nature
, vol.407
, pp. 513-516
-
-
Altshuler, D.1
Pollara, V.J.2
Cowles, C.R.3
Van Etten, W.J.4
Baldwin, J.5
Linton, L.6
Lander, E.S.7
-
3
-
-
80051478843
-
Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication
-
Amores A., Catchen J., Ferrara A., Fontenot Q., Postlethwait J.H. Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication. Genetics 2011, 188:799-808.
-
(2011)
Genetics
, vol.188
, pp. 799-808
-
-
Amores, A.1
Catchen, J.2
Ferrara, A.3
Fontenot, Q.4
Postlethwait, J.H.5
-
4
-
-
23244450073
-
Genetic structure in populations of an ancient woodland sedge, Carex sylvatica Hudson, at a regional and local scale
-
Arens P., Bijlsma R., Van't Westende W., Van Os B., Smulders M.J.M., Vosman B. Genetic structure in populations of an ancient woodland sedge, Carex sylvatica Hudson, at a regional and local scale. Plant Biol. 2005, 7:387-396.
-
(2005)
Plant Biol.
, vol.7
, pp. 387-396
-
-
Arens, P.1
Bijlsma, R.2
Van't Westende, W.3
Van Os, B.4
Smulders, M.J.M.5
Vosman, B.6
-
5
-
-
34948847222
-
A new approach to estimate parameters of speciation models with application to apes
-
Becquet C., Przeworski M. A new approach to estimate parameters of speciation models with application to apes. Genome Res. 2007, 17:1505-1519.
-
(2007)
Genome Res.
, vol.17
, pp. 1505-1519
-
-
Becquet, C.1
Przeworski, M.2
-
6
-
-
34247638687
-
Genetic structure of chimpanzee populations
-
Becquet C., Patterson N., Stone A.C., Przeworski M., Reich D. Genetic structure of chimpanzee populations. PLoS Genet. 2007, 3:617-626.
-
(2007)
PLoS Genet.
, vol.3
, pp. 617-626
-
-
Becquet, C.1
Patterson, N.2
Stone, A.C.3
Przeworski, M.4
Reich, D.5
-
7
-
-
78650445809
-
Recent trends in molecular phylogenetic analysis: where to next?
-
Blair C., Murphy R.W. Recent trends in molecular phylogenetic analysis: where to next?. J. Hered. 2011, 102:130-138.
-
(2011)
J. Hered.
, vol.102
, pp. 130-138
-
-
Blair, C.1
Murphy, R.W.2
-
8
-
-
84863085677
-
Coalescent simulations reveal hybridization and incomplete lineage sorting in mediterranean Linaria
-
Blanco-Pastor J.L., Vargas P., Pfeil B.E. Coalescent simulations reveal hybridization and incomplete lineage sorting in mediterranean Linaria. PLoS ONE 2012, 7:e39089.
-
(2012)
PLoS ONE
, vol.7
-
-
Blanco-Pastor, J.L.1
Vargas, P.2
Pfeil, B.E.3
-
9
-
-
84884299558
-
Stacks: Building and genotyping loci de novo from short-read sequences
-
Catchen J.M., Amores A., Hohenlohe P., Cresko W., Postlethwait J.H. Stacks: Building and genotyping loci de novo from short-read sequences. G3 (Bethesda) 2011, 171-182.
-
(2011)
G3 (Bethesda)
, pp. 171-182
-
-
Catchen, J.M.1
Amores, A.2
Hohenlohe, P.3
Cresko, W.4
Postlethwait, J.H.5
-
10
-
-
0027011560
-
Hybridization in the genus Carex with special reference to North America
-
Cayouette J., Catling P.M. Hybridization in the genus Carex with special reference to North America. Bot. Rev. 1992, 58:351-438.
-
(1992)
Bot. Rev.
, vol.58
, pp. 351-438
-
-
Cayouette, J.1
Catling, P.M.2
-
11
-
-
78650974939
-
Dynamics of chromosome number and genome size variation in a cytogenetically variable sedge (Carex scoparia var. scoparia, Cyperaceae)
-
Chung K.-S., Weber J.A., Hipp A.L. Dynamics of chromosome number and genome size variation in a cytogenetically variable sedge (Carex scoparia var. scoparia, Cyperaceae). Am. J. Bot. 2011, 98:122-129.
-
(2011)
Am. J. Bot.
, vol.98
, pp. 122-129
-
-
Chung, K.-S.1
Weber, J.A.2
Hipp, A.L.3
-
12
-
-
84899556177
-
Empirical assessment of RAD sequencing for interspecific phylogeny
-
Cruaud A., Gautier M., Galan M., Foucaud J., Sauné L., Genson G., Dubois E., Nidelet S., Deuve T., Rasplus J.-Y. Empirical assessment of RAD sequencing for interspecific phylogeny. Mol. Biol. Evol. 2014.
-
(2014)
Mol. Biol. Evol.
-
-
Cruaud, A.1
Gautier, M.2
Galan, M.3
Foucaud, J.4
Sauné, L.5
Genson, G.6
Dubois, E.7
Nidelet, S.8
Deuve, T.9
Rasplus, J.-Y.10
-
13
-
-
84880786191
-
Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes
-
Cui R., Schumer M., Kruesi K., Walter R., Andolfatto P., Rosenthal G.G. Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes. Evolution 2013, 67:2166-2179.
-
(2013)
Evolution
, vol.67
, pp. 2166-2179
-
-
Cui, R.1
Schumer, M.2
Kruesi, K.3
Walter, R.4
Andolfatto, P.5
Rosenthal, G.G.6
-
14
-
-
84863496231
-
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
-
Dasmahapatra K.K., Walters J.R., Briscoe A.D., Davey J.W., Whibley A., Nadeau N.J., Zimin A.V., Hughes D.S.T., Ferguson L.C., Martin S.H., et al. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 2012, 486:94-98.
-
(2012)
Nature
, vol.486
, pp. 94-98
-
-
Dasmahapatra, K.K.1
Walters, J.R.2
Briscoe, A.D.3
Davey, J.W.4
Whibley, A.5
Nadeau, N.J.6
Zimin, A.V.7
Hughes, D.S.T.8
Ferguson, L.C.9
Martin, S.H.10
-
15
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey J.W., Hohenlohe P.A., Etter P.D., Boone J.Q., Catchen J.M., Blaxter M.L. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 2011, 12:499-510.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
16
-
-
65649131928
-
Gene tree discordance, phylogenetic inference and the multispecies coalescent
-
Degnan J.H., Rosenberg N.A. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 2009, 24:332-340.
-
(2009)
Trends Ecol. Evol.
, vol.24
, pp. 332-340
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
17
-
-
70349897456
-
Systematics of the Carex aquatilis and C. lenticularis lineages: geographically and ecologically divergent sister clades of Carex section Phacocystis (Cyperaceae)
-
Dragon J.A., Barrington D.S. Systematics of the Carex aquatilis and C. lenticularis lineages: geographically and ecologically divergent sister clades of Carex section Phacocystis (Cyperaceae). Am. J. Bot. 2009, 96:1896-1906.
-
(2009)
Am. J. Bot.
, vol.96
, pp. 1896-1906
-
-
Dragon, J.A.1
Barrington, D.S.2
-
18
-
-
79961039058
-
Testing for ancient admixture between closely related populations
-
Durand E.Y., Patterson N., Reich D., Slatkin M. Testing for ancient admixture between closely related populations. Mol. Biol. Evol. 2011, 28:2239-2252.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2239-2252
-
-
Durand, E.Y.1
Patterson, N.2
Reich, D.3
Slatkin, M.4
-
19
-
-
84903726447
-
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
-
Eaton D.A.R. PyRAD: assembly of de novo RADseq loci for phylogenetic analyses. Bioinformatics 2014, 10.1093/bioinformatics/btu1121.
-
(2014)
Bioinformatics
-
-
Eaton, D.A.R.1
-
20
-
-
84881616406
-
Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)
-
Eaton D.A.R., Ree R.H. Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae). Syst. Biol. 2013, 62:689-706.
-
(2013)
Syst. Biol.
, vol.62
, pp. 689-706
-
-
Eaton, D.A.R.1
Ree, R.H.2
-
21
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire R.J., Glaubitz J.C., Sun Q., Poland J.A., Kawamoto K., Buckler E.S., Mitchell S.E. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 2011, 6:e19379.
-
(2011)
PLoS ONE
, vol.6
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
Poland, J.A.4
Kawamoto, K.5
Buckler, E.S.6
Mitchell, S.E.7
-
22
-
-
77958007159
-
Resolving postglacial phylogeography using high-throughput sequencing
-
Emerson K.J., Merz C.R., Catchen J.M., Hohenlohe P.A., Cresko W.A., Bradshaw W.E., Holzapfel C.M. Resolving postglacial phylogeography using high-throughput sequencing. Proc. Natl. Acad. Sci. USA 2010, 107:16196-16200.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 16196-16200
-
-
Emerson, K.J.1
Merz, C.R.2
Catchen, J.M.3
Hohenlohe, P.A.4
Cresko, W.A.5
Bradshaw, W.E.6
Holzapfel, C.M.7
-
23
-
-
70350707688
-
Significance of ecological vicariance and long-distance dispersal in the diversification of Carex sect. Spirostachyae (Cyperaceae)
-
Escudero M., Valcárcel V., Vargas P., Luceño M. Significance of ecological vicariance and long-distance dispersal in the diversification of Carex sect. Spirostachyae (Cyperaceae). Am. J. Bot. 2009, 96:2100-2114.
-
(2009)
Am. J. Bot.
, vol.96
, pp. 2100-2114
-
-
Escudero, M.1
Valcárcel, V.2
Vargas, P.3
Luceño, M.4
-
24
-
-
77956230785
-
Karyotype stability and predictors of chromosome number variation in sedges: a study in Carex section Spirostachyae (Cyperaceae)
-
Escudero M., Hipp A.L., Luceño M. Karyotype stability and predictors of chromosome number variation in sedges: a study in Carex section Spirostachyae (Cyperaceae). Mol. Phylogenet. Evol. 2010, 57:353-363.
-
(2010)
Mol. Phylogenet. Evol.
, vol.57
, pp. 353-363
-
-
Escudero, M.1
Hipp, A.L.2
Luceño, M.3
-
25
-
-
73949090975
-
The east-west-north colonization history of the Mediterranean and Europe by the coastal plant Carex extensa (Cyperaceae)
-
Escudero M., Vargas P., Arens P., Ouborg N.J., LuceÑo M. The east-west-north colonization history of the Mediterranean and Europe by the coastal plant Carex extensa (Cyperaceae). Mol. Ecol. 2010, 19:352-370.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 352-370
-
-
Escudero, M.1
Vargas, P.2
Arens, P.3
Ouborg, N.J.4
LuceÑo, M.5
-
26
-
-
75149174595
-
Bipolar disjunctions in Carex: long-distance dispersal, vicariance, or parallel evolution?
-
Escudero M., Valcárcel V., Vargas P., Luceño M. Bipolar disjunctions in Carex: long-distance dispersal, vicariance, or parallel evolution?. Flora (Jena) 2010, 205:118-127.
-
(2010)
Flora (Jena)
, vol.205
, pp. 118-127
-
-
Escudero, M.1
Valcárcel, V.2
Vargas, P.3
Luceño, M.4
-
27
-
-
84861478390
-
Selection and inertia in the evolution of holocentric chromosomes in sedges (Carex, Cyperaceae)
-
Escudero M., Hipp A.L., Hansen T.F., Voje K.L., Luceño M. Selection and inertia in the evolution of holocentric chromosomes in sedges (Carex, Cyperaceae). New Phytol. 2012, 195:237-247.
-
(2012)
New Phytol.
, vol.195
, pp. 237-247
-
-
Escudero, M.1
Hipp, A.L.2
Hansen, T.F.3
Voje, K.L.4
Luceño, M.5
-
28
-
-
84859871758
-
Diversification rates and chromosome evolution in the most diverse angiosperm genus of the temperate zone (Carex, Cyperaceae)
-
Escudero M., Hipp A.L., Waterway M.J., Valente L.M. Diversification rates and chromosome evolution in the most diverse angiosperm genus of the temperate zone (Carex, Cyperaceae). Mol. Phylogenet. Evol. 2012, 63:650-655.
-
(2012)
Mol. Phylogenet. Evol.
, vol.63
, pp. 650-655
-
-
Escudero, M.1
Hipp, A.L.2
Waterway, M.J.3
Valente, L.M.4
-
29
-
-
84880874619
-
Species coherence in the face of karyotype diversification in holocentric organisms: the case of a cytogenetically variable sedge (Carex scoparia, Cyperaceae)
-
Escudero M., Weber J.A., Hipp A.L. Species coherence in the face of karyotype diversification in holocentric organisms: the case of a cytogenetically variable sedge (Carex scoparia, Cyperaceae). Ann. Bot. 2013, 112:515-526.
-
(2013)
Ann. Bot.
, vol.112
, pp. 515-526
-
-
Escudero, M.1
Weber, J.A.2
Hipp, A.L.3
-
30
-
-
84875518009
-
Selection by climatic regime and neutral evolutionary processes in holocentric chromosomes (Carex gr. laevigata: Cyperaceae): a microevolutionary approach
-
Escudero M., Maguilla E., Luceño M. Selection by climatic regime and neutral evolutionary processes in holocentric chromosomes (Carex gr. laevigata: Cyperaceae): a microevolutionary approach. Perspect. Plant Ecol. Evol. Syst. 2013, 15:118-129.
-
(2013)
Perspect. Plant Ecol. Evol. Syst.
, vol.15
, pp. 118-129
-
-
Escudero, M.1
Maguilla, E.2
Luceño, M.3
-
31
-
-
57649187320
-
The consequences of monoecy and protogyny for mating in wind-pollinated Carex
-
Friedman J., Barrett S.C.H. The consequences of monoecy and protogyny for mating in wind-pollinated Carex. New Phytol. 2009, 181:489-497.
-
(2009)
New Phytol.
, vol.181
, pp. 489-497
-
-
Friedman, J.1
Barrett, S.C.H.2
-
32
-
-
80052741573
-
Time, space and ecology: why some clades have more species than others
-
Gehrke B., Linder H.P. Time, space and ecology: why some clades have more species than others. J. Biogeogr. 2011, 38:1948-1962.
-
(2011)
J. Biogeogr.
, vol.38
, pp. 1948-1962
-
-
Gehrke, B.1
Linder, H.P.2
-
36
-
-
77952136530
-
A draft sequence of the neandertal genome
-
Green R.E., Krause J., Briggs A.W., Maricic T., Stenzel U., Kircher M., Patterson N., Li H., Zhai W., Fritz M.H., et al. A draft sequence of the neandertal genome. Science 2010, 328:710-722.
-
(2010)
Science
, vol.328
, pp. 710-722
-
-
Green, R.E.1
Krause, J.2
Briggs, A.W.3
Maricic, T.4
Stenzel, U.5
Kircher, M.6
Patterson, N.7
Li, H.8
Zhai, W.9
Fritz, M.H.10
-
37
-
-
84904894035
-
-
Sequence capture versus restriction site associated DNA sequencing for phylogeography. arXiv:1312.6439.
-
Harvey, M.G., Smith, B.T., Glenn, T.C., Faircloth, B.C., Brumfield, R.T., 2013. Sequence capture versus restriction site associated DNA sequencing for phylogeography. arXiv:1312.6439.
-
(2013)
-
-
Harvey, M.G.1
Smith, B.T.2
Glenn, T.C.3
Faircloth, B.C.4
Brumfield, R.T.5
-
38
-
-
3142714474
-
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
-
Hey J., Nielsen R. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 2004, 167:747-760.
-
(2004)
Genetics
, vol.167
, pp. 747-760
-
-
Hey, J.1
Nielsen, R.2
-
39
-
-
33847253975
-
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
-
Hey J., Nielsen R. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc. Natl. Acad. Sci. USA 2007, 104:2785-2790.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2785-2790
-
-
Hey, J.1
Nielsen, R.2
-
40
-
-
34548309579
-
Nonuniform processes of chromosome evolution in sedges (Carex: Cyperaceae)
-
Hipp A.L. Nonuniform processes of chromosome evolution in sedges (Carex: Cyperaceae). Evolution 2007, 61:2175-2194.
-
(2007)
Evolution
, vol.61
, pp. 2175-2194
-
-
Hipp, A.L.1
-
41
-
-
84904878654
-
-
RADami: R Package for Phylogenetic Analysis of RADseq Data. R package version 1.0-3.
-
Hipp, A.L., 2014. RADami: R Package for Phylogenetic Analysis of RADseq Data. R package version 1.0-3. http://www.CRAN.R-project.org/package=RADami.
-
(2014)
-
-
Hipp, A.L.1
-
42
-
-
33749595081
-
Phylogeny and classification of Carex section Ovales (Cyperaceae)
-
Hipp A.L., Reznicek A.A., Rothrock P.E., Weber J.A. Phylogeny and classification of Carex section Ovales (Cyperaceae). Int. J. Plant Sci. 2006, 167:1029-1048.
-
(2006)
Int. J. Plant Sci.
, vol.167
, pp. 1029-1048
-
-
Hipp, A.L.1
Reznicek, A.A.2
Rothrock, P.E.3
Weber, J.A.4
-
43
-
-
34548348564
-
Changes in chromosome number associated with speciation in sedges: a phylogenetic study in Carex section Ovales (Cyperaceae) using AFLP data
-
Hipp A.L., Rothrock P.E., Reznicek A.A., Berry P.E. Changes in chromosome number associated with speciation in sedges: a phylogenetic study in Carex section Ovales (Cyperaceae) using AFLP data. Aliso 2007, 23:193-203.
-
(2007)
Aliso
, vol.23
, pp. 193-203
-
-
Hipp, A.L.1
Rothrock, P.E.2
Reznicek, A.A.3
Berry, P.E.4
-
44
-
-
60349102391
-
Isolation of 11 polymorphic tri- and tetranucleotide microsatellite loci in a North American sedge (Carex scoparia: Cyperaceae) and cross-species amplification in three additional Carex species
-
Hipp A.L., Kettenring K.M., Feldheim K.A., Weber J.A. Isolation of 11 polymorphic tri- and tetranucleotide microsatellite loci in a North American sedge (Carex scoparia: Cyperaceae) and cross-species amplification in three additional Carex species. Mol. Ecol. Resour. 2009, 9:625-627.
-
(2009)
Mol. Ecol. Resour.
, vol.9
, pp. 625-627
-
-
Hipp, A.L.1
Kettenring, K.M.2
Feldheim, K.A.3
Weber, J.A.4
-
45
-
-
77954837413
-
Chromosomes tell half of the story: the correlation between karyotype rearrangements and genetic diversity in sedges, a group with holocentric chromosomes
-
Hipp A.L., Rothrock P.E., Whitkus R., Weber J.A. Chromosomes tell half of the story: the correlation between karyotype rearrangements and genetic diversity in sedges, a group with holocentric chromosomes. Mol. Ecol. 2010, 19:3124-3138.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 3124-3138
-
-
Hipp, A.L.1
Rothrock, P.E.2
Whitkus, R.3
Weber, J.A.4
-
46
-
-
84904868429
-
Using phylogenomics to infer the evolutionary history of oaks
-
Hipp A.L., Manos P.S., Cavender-Bares J., Eaton D.A.R., Nipper R. Using phylogenomics to infer the evolutionary history of oaks. Int. Oak J. 2013, 24:61-71.
-
(2013)
Int. Oak J.
, vol.24
, pp. 61-71
-
-
Hipp, A.L.1
Manos, P.S.2
Cavender-Bares, J.3
Eaton, D.A.R.4
Nipper, R.5
-
47
-
-
84899061444
-
A framework phylogeny of the American oak clade based on sequenced RAD data
-
Hipp A.L., Eaton D.A.R., Cavender-Bares J., Fitzek E., Nipper R., Manos P.S. A framework phylogeny of the American oak clade based on sequenced RAD data. PLoS ONE 2014, 9:e93975.
-
(2014)
PLoS ONE
, vol.9
-
-
Hipp, A.L.1
Eaton, D.A.R.2
Cavender-Bares, J.3
Fitzek, E.4
Nipper, R.5
Manos, P.S.6
-
48
-
-
77649219524
-
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
-
Hohenlohe P.A., Bassham S., Etter P.D., Stiffler N., Johnson E.A., Cresko W.A. Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet. 2010, 6:e1000862.
-
(2010)
PLoS Genet.
, vol.6
-
-
Hohenlohe, P.A.1
Bassham, S.2
Etter, P.D.3
Stiffler, N.4
Johnson, E.A.5
Cresko, W.A.6
-
49
-
-
79951748696
-
Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
-
Hohenlohe P.A., Amish S.J., Catchen J.M., Allendorf F.W., Luikart G. Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Mol. Ecol. Resour. 2011, 11:117-122.
-
(2011)
Mol. Ecol. Resour.
, vol.11
, pp. 117-122
-
-
Hohenlohe, P.A.1
Amish, S.J.2
Catchen, J.M.3
Allendorf, F.W.4
Luikart, G.5
-
50
-
-
84858386923
-
Taxonomic delimitation and drivers of speciation in the Ibero-North African Carex sect. Phacocystis river-shore group (Cyperaceae)
-
Jiménez-Mejías P., Escudero M., Guerra-Cárdenas S., Lye K.A., Luceño M. Taxonomic delimitation and drivers of speciation in the Ibero-North African Carex sect. Phacocystis river-shore group (Cyperaceae). Am. J. Bot. 2011, 98:1855-1867.
-
(2011)
Am. J. Bot.
, vol.98
, pp. 1855-1867
-
-
Jiménez-Mejías, P.1
Escudero, M.2
Guerra-Cárdenas, S.3
Lye, K.A.4
Luceño, M.5
-
51
-
-
84869877290
-
Genetically diverse but with surprisingly little geographical structure: the complex history of the widespread herb Carex nigra (Cyperaceae)
-
Jiménez-Mejías P., Luceño M., Lye K.A., Brochmann C., Gussarova G. Genetically diverse but with surprisingly little geographical structure: the complex history of the widespread herb Carex nigra (Cyperaceae). J. Biogeogr. 2012, 39:2279-2291.
-
(2012)
J. Biogeogr.
, vol.39
, pp. 2279-2291
-
-
Jiménez-Mejías, P.1
Luceño, M.2
Lye, K.A.3
Brochmann, C.4
Gussarova, G.5
-
52
-
-
0004149769
-
-
Sinauer Associates Inc., Sunderland
-
Judd W.S., Campbell C.S., Kellogg E.A., Stevens P.F., Donoghue M.J. Plant Systematics: A Phylogenetic Approach 2007, Sinauer Associates Inc., Sunderland. third ed.
-
(2007)
Plant Systematics: A Phylogenetic Approach
-
-
Judd, W.S.1
Campbell, C.S.2
Kellogg, E.A.3
Stevens, P.F.4
Donoghue, M.J.5
-
53
-
-
84904909053
-
-
Kartesz, J.T., 2014. The Biota of North America Program (BONAP). Taxonomic Data Center. Chapel Hill, N.C.
-
Kartesz, J.T., 2014. The Biota of North America Program (BONAP). Taxonomic Data Center. Chapel Hill, N.C. http://www.bonap.net/tdc.
-
-
-
-
54
-
-
84959806898
-
A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
-
Kluge A.G. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zoo. 1989, 38:7-25.
-
(1989)
Syst. Zoo.
, vol.38
, pp. 7-25
-
-
Kluge, A.G.1
-
55
-
-
79960058683
-
Amplification-free library preparation for paired-end Illumina sequencing
-
Kozarewa I., Turner D.J. Amplification-free library preparation for paired-end Illumina sequencing. Methods Mol. Biol. 2011, 733:257-266.
-
(2011)
Methods Mol. Biol.
, vol.733
, pp. 257-266
-
-
Kozarewa, I.1
Turner, D.J.2
-
56
-
-
68049099068
-
Coalescent methods for estimating phylogenetic trees
-
Liu L., Yu L., Kubatko L., Pearl D.K., Edwards S.V. Coalescent methods for estimating phylogenetic trees. Mol. Phylogenet. Evol. 2009, 53:320-328.
-
(2009)
Mol. Phylogenet. Evol.
, vol.53
, pp. 320-328
-
-
Liu, L.1
Yu, L.2
Kubatko, L.3
Pearl, D.K.4
Edwards, S.V.5
-
57
-
-
84888639785
-
A new name and status for Carex scoparia var. tessellata (Cyperaceae)
-
Lovit M., Haines A. A new name and status for Carex scoparia var. tessellata (Cyperaceae). Bot. Notes 2012, 14:1-5.
-
(2012)
Bot. Notes
, vol.14
, pp. 1-5
-
-
Lovit, M.1
Haines, A.2
-
58
-
-
84873505245
-
Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol
-
Lu F., Lipka A.E., Glaubitz J., Elshire R., Cherney J.H., Casler M.D., Buckler E.S., Costich D.E. Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol. PLoS Genet. 2013, 9:e1003215.
-
(2013)
PLoS Genet.
, vol.9
-
-
Lu, F.1
Lipka, A.E.2
Glaubitz, J.3
Elshire, R.4
Cherney, J.H.5
Casler, M.D.6
Buckler, E.S.7
Costich, D.E.8
-
59
-
-
33644606488
-
Inferring phylogeny despite incomplete lineage sorting
-
Maddison W., Knowles L. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 2006, 55:21-30.
-
(2006)
Syst. Biol.
, vol.55
, pp. 21-30
-
-
Maddison, W.1
Knowles, L.2
-
60
-
-
84861691274
-
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species
-
Peterson B.K., Weber J.N., Kay E.H., Fisher H.S., Hoekstra H.E. Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS ONE 2012, 7:e37135.
-
(2012)
PLoS ONE
, vol.7
-
-
Peterson, B.K.1
Weber, J.N.2
Kay, E.H.3
Fisher, H.S.4
Hoekstra, H.E.5
-
61
-
-
65249099546
-
Phylogenomics revives traditional views on deep animal relationships
-
Philippe H., Derelle R., Lopez P., Pick K., Borchiellini C., Boury-Esnault N., Vacelet J., Renard E., Houliston E., Quéinnec E., et al. Phylogenomics revives traditional views on deep animal relationships. Curr. Biol. 2009, 19:706-712.
-
(2009)
Curr. Biol.
, vol.19
, pp. 706-712
-
-
Philippe, H.1
Derelle, R.2
Lopez, P.3
Pick, K.4
Borchiellini, C.5
Boury-Esnault, N.6
Vacelet, J.7
Renard, E.8
Houliston, E.9
Quéinnec, E.10
-
62
-
-
49749129961
-
Confirming the phylogeny of mammals by use of large comparative sequence data sets
-
Prasad A.B., Allard M.W., Green E.D. Confirming the phylogeny of mammals by use of large comparative sequence data sets. Mol. Biol. Evol. 2008, 25:1795-1808.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1795-1808
-
-
Prasad, A.B.1
Allard, M.W.2
Green, E.D.3
-
63
-
-
33845627286
-
The supermatrix approach to systematics
-
de Queiroz A., Gatesy J. The supermatrix approach to systematics. Trends Ecol. Evol. 2007, 22:34-41.
-
(2007)
Trends Ecol. Evol.
, vol.22
, pp. 34-41
-
-
de Queiroz, A.1
Gatesy, J.2
-
65
-
-
84904894034
-
-
Tracer v1.4
-
Rambaut, A., Drummond, A.J., 2007. Tracer v1.4, http://www.beast.bio.ed.ac.uk/Tracer.
-
(2007)
-
-
Rambaut, A.1
Drummond, A.J.2
-
67
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A., Williams B.I., King N., Carroll S.B. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 2003, 425:798-804.
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.I.2
King, N.3
Carroll, S.B.4
-
68
-
-
84860109324
-
Mrbayes 3.2: efficient bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F., Teslenko M., Van Der Mark P., Ayres D.L., Darling A., Höhna S., Larget B., Liu L., Suchard M.A., Huelsenbeck J.P. Mrbayes 3.2: efficient bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 2012, 61:539-542.
-
(2012)
Syst. Biol.
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Van Der Mark, P.3
Ayres, D.L.4
Darling, A.5
Höhna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
69
-
-
0031412005
-
Taxonomy of the Carex straminea complex (Cyperaceae)
-
Rothrock P.E., Reznicek A.A., Ganion L.R. Taxonomy of the Carex straminea complex (Cyperaceae). Can. J. Bot. 1997, 75:2177-2195.
-
(1997)
Can. J. Bot.
, vol.75
, pp. 2177-2195
-
-
Rothrock, P.E.1
Reznicek, A.A.2
Ganion, L.R.3
-
70
-
-
84859516080
-
Inferring phylogenies from RAD sequence data
-
Rubin B.E.R., Ree R.H., Moreau C.S. Inferring phylogenies from RAD sequence data. PLoS ONE 2012, 7:e33394.
-
(2012)
PLoS ONE
, vol.7
-
-
Rubin, B.E.R.1
Ree, R.H.2
Moreau, C.S.3
-
71
-
-
84872575342
-
Hybridization, speciation and novelty
-
Soltis P.S. Hybridization, speciation and novelty. J. Evol. Biol. 2013, 26:291-293.
-
(2013)
J. Evol. Biol.
, vol.26
, pp. 291-293
-
-
Soltis, P.S.1
-
72
-
-
67651052323
-
The role of hybridization in plant speciation
-
Soltis P.S., Soltis D.E. The role of hybridization in plant speciation. Annu. Rev. Plant Biol. 2009, 60:561-588.
-
(2009)
Annu. Rev. Plant Biol.
, vol.60
, pp. 561-588
-
-
Soltis, P.S.1
Soltis, D.E.2
-
73
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
74
-
-
84872480881
-
Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
-
Wagner C.E., Keller I., Wittwer S., Selz O.M., Mwaiko S., Greuter L., Sivasundar A., Seehausen O. Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation. Mol. Ecol. 2013, 22:787-798.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 787-798
-
-
Wagner, C.E.1
Keller, I.2
Wittwer, S.3
Selz, O.M.4
Mwaiko, S.5
Greuter, L.6
Sivasundar, A.7
Seehausen, O.8
-
75
-
-
84881616937
-
Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing
-
Wang X.Q., Zhao L., Eaton D.A.R., Li D.Z., Guo Z.H. Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing. Mol. Ecol. Resour. 2013, 13:938-945.
-
(2013)
Mol. Ecol. Resour.
, vol.13
, pp. 938-945
-
-
Wang, X.Q.1
Zhao, L.2
Eaton, D.A.R.3
Li, D.Z.4
Guo, Z.H.5
-
76
-
-
0000162362
-
Phylogenetic incongruence: window into genome history and molecular evolution
-
Kluwer Academic Publishers, Norwell, D.E. Soltis, P.S. Soltis, J.J. Doyle (Eds.)
-
Wendel J.F., Doyle J.J. Phylogenetic incongruence: window into genome history and molecular evolution. Molecular Systematics of Plants II: DNA Sequencing 1998, 265-296. Kluwer Academic Publishers, Norwell. D.E. Soltis, P.S. Soltis, J.J. Doyle (Eds.).
-
(1998)
Molecular Systematics of Plants II: DNA Sequencing
, pp. 265-296
-
-
Wendel, J.F.1
Doyle, J.J.2
-
77
-
-
0002370746
-
Experimental hybridization among chromosome races of Carex pachystachya and the related species Carex macloviana and Carex preslii (Cyperaceae)
-
Whitkus R. Experimental hybridization among chromosome races of Carex pachystachya and the related species Carex macloviana and Carex preslii (Cyperaceae). Syst. Bot. 1988, 13:146-153.
-
(1988)
Syst. Bot.
, vol.13
, pp. 146-153
-
-
Whitkus, R.1
-
78
-
-
84904863795
-
-
b. Systematics and evolution of the Carex pachystachya complex (Cyperaceae). PhD thesis, Ohio State University.
-
Whitkus, R., 1988b. Systematics and evolution of the Carex pachystachya complex (Cyperaceae). PhD thesis, Ohio State University.
-
(1988)
-
-
Whitkus, R.1
-
79
-
-
0000784739
-
A taxonomist's experience with hybrids in the wild
-
Wiegand K.M. A taxonomist's experience with hybrids in the wild. Science 1935, 81:161-166.
-
(1935)
Science
, vol.81
, pp. 161-166
-
-
Wiegand, K.M.1
-
80
-
-
39149111906
-
The distribution of the coalescence time and the number of pairwise nucleotide differences in the "isolation with migration" model
-
Wilkinson-Herbots H.M. The distribution of the coalescence time and the number of pairwise nucleotide differences in the "isolation with migration" model. Theor. Popul. Biol. 2008, 73:277-288.
-
(2008)
Theor. Popul. Biol.
, vol.73
, pp. 277-288
-
-
Wilkinson-Herbots, H.M.1
-
81
-
-
67749104828
-
Gene trees and species trees - mutual influences and interdependences of population genetics and systematics
-
Zachos F.E. Gene trees and species trees - mutual influences and interdependences of population genetics and systematics. J. Zool. Syst. Evol. Res. 2009, 47:209-218.
-
(2009)
J. Zool. Syst. Evol. Res.
, vol.47
, pp. 209-218
-
-
Zachos, F.E.1
|