-
1
-
-
33748369114
-
Methods and protocols of modern solid phase peptide synthesis
-
DOI 10.1385/MB:33:3:239, PII MB333239
-
Amblard M, Fehrentz JA, Martinez J, Subra G (2006) Methods and protocols of modern solid phase peptide synthesis. Mol Biotech 33:239-254 (Pubitemid 44337228)
-
(2006)
Molecular Biotechnology
, vol.33
, Issue.3
, pp. 239-254
-
-
Amblard, M.1
Fehrentz, J.-A.2
Martinez, J.3
Subra, G.4
-
2
-
-
84881274335
-
The structure of an MDM2-Nutlin-3a complex solved by the use of a validated MDM2 surface-entropy reduction mutant
-
Anil B, Riedinger C, Endicott JA, Noble ME (2013) The structure of an MDM2-Nutlin-3a complex solved by the use of a validated MDM2 surface-entropy reduction mutant. Acta Crystallogr D 69:1358-1366
-
(2013)
Acta Crystallogr D
, vol.69
, pp. 1358-1366
-
-
Anil, B.1
Riedinger, C.2
Endicott, J.A.3
Noble, M.E.4
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235-242 (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
4
-
-
7444265760
-
The changing global patterns of female breast cancer incidence and mortality
-
DOI 10.1186/bcr932
-
Bray F, McCarron P, Parkin DM (2004) The changing global patterns of female breast cancer incidence and mortality. Breast Cancer Res 6:229-239 (Pubitemid 39440251)
-
(2004)
Breast Cancer Research
, vol.6
, Issue.6
, pp. 229-239
-
-
Bray, F.1
McCarron, P.2
Parkin, D.M.3
-
5
-
-
84865417165
-
Cannabinoids: A new hope for breast cancer therapy?
-
Caffarel MM, Andradas C, Pérez-Gómez E, Guzmán M, Sánchez C (2012) Cannabinoids: a new hope for breast cancer therapy? Cancer Treat Rev 38:911-918
-
(2012)
Cancer Treat Rev
, vol.38
, pp. 911-918
-
-
Caffarel, M.M.1
Andradas, C.2
Pérez-Gómez, E.3
Guzmán, M.4
Sánchez, C.5
-
6
-
-
23444454552
-
The Amber biomolecular simulation programs
-
DOI 10.1002/jcc.20290
-
Case DA, Cheatham TE, Darden T, Gohlke H, Luo R, Merz KM (2005) The Amber biomolecular simulation programs. J Comput Chem 26:1668-1688 (Pubitemid 43076180)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr., K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
7
-
-
84883432191
-
Stapled α-helical peptide drug development: A potent dual inhibitor of MDM2 and MDMX for p53-dependent cancer therapy
-
Chang YS, Graves B, Guerlavais V, Tovar C, Packman K, To KH, Olson KA, Kesavan K, Gangurde P, Mukherjee A, Baker T, Darlak K, Elkin C, Filipovic Z, Qureshi FZ, Cai H, Berry P, Feyfant E, Shi XE, Horstick J, Annis DA, Manning AM, Fotouhi N, Nash H, Vassilev LT, Sawyer TK (2013) Stapled α-helical peptide drug development: a potent dual inhibitor of MDM2 and MDMX for p53-dependent cancer therapy. Proc Natl Acad Sci USA 110:3445-3454
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 3445-3454
-
-
Chang, Y.S.1
Graves, B.2
Guerlavais, V.3
Tovar, C.4
Packman, K.5
To, K.H.6
Olson, K.A.7
Kesavan, K.8
Gangurde, P.9
Mukherjee, A.10
Baker, T.11
Darlak, K.12
Elkin, C.13
Filipovic, Z.14
Qureshi, F.Z.15
Cai, H.16
Berry, P.17
Feyfant, E.18
Shi, X.E.19
Horstick, J.20
Annis, D.A.21
Manning, A.M.22
Fotouhi, N.23
Nash, H.24
Vassilev, L.T.25
Sawyer, T.K.26
more..
-
8
-
-
0842325666
-
Inhibition of the p53-MDM2 interaction: Targeting a protein-protein interface
-
Chene P (2004) Inhibition of the p53-MDM2 interaction: targeting a protein-protein interface. Mol Cancer Res 2:20-28
-
(2004)
Mol Cancer Res
, vol.2
, pp. 20-28
-
-
Chene, P.1
-
9
-
-
33644673642
-
Structural details on mdm2-p53 interaction
-
DOI 10.1074/jbc.M508578200
-
Chi SW, Lee SH, Kim DH, Ahn MJ, Kim JS, Woo JY, Torizawa T, Kainosho M, Han KH (2005) Structural details on mdm2-p53 interaction. J Biol Chem 280:38795-38802 (Pubitemid 43853782)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.46
, pp. 38795-38802
-
-
Chi, S.-W.1
Lee, S.-H.2
Kim, D.-H.3
Ahn, M.-J.4
Kim, J.-S.5
Woo, J.-Y.6
Torizawa, T.7
Kainosho, M.8
Han, K.-H.9
-
10
-
-
0026630604
-
p53 mutations in breast cancer
-
Coles C, Condie A, Chetty U, Steel CM, Evans HJ, Prosser J (1992) p53 mutations in breast cancer. Cancer Res 52:5291-5298
-
(1992)
Cancer Res
, vol.52
, pp. 5291-5298
-
-
Coles, C.1
Condie, A.2
Chetty, U.3
Steel, C.M.4
Evans, H.J.5
Prosser, J.6
-
11
-
-
77949868550
-
Structure-based design of peptides against G3BP with cytotoxicity on tumor cells
-
Cui W, Wei Z, Chen Q, Cheng Y, Geng L, Zhang J, Chen J, Hou T, Ji M (2010) Structure-based design of peptides against G3BP with cytotoxicity on tumor cells. J Chem Inf Model 50:380-387
-
(2010)
J Chem Inf Model
, vol.50
, pp. 380-387
-
-
Cui, W.1
Wei, Z.2
Chen, Q.3
Cheng, Y.4
Geng, L.5
Zhang, J.6
Chen, J.7
Hou, T.8
Ji, M.9
-
12
-
-
33846823909
-
Particale mesh Ewald and N.Log(N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L (1993) Particale mesh Ewald and N.log(N) method for Ewald sums in large systems. J Chem Phys 98:10089-10092
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
13
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan Y, Wu C, Chowdhury S, Lee MC, Xiong GM, Zhang W (2003) A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J Comput Chem 24:1999-2012
-
(2003)
J Comput Chem
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.M.5
Zhang, W.6
-
14
-
-
0036129489
-
The p53 pathway in breast cancer
-
DOI 10.1186/bcr426
-
Gasco M, Shami S, Crook T (2002) The p53 pathway in breast cancer. Breast Cancer Res 4:70-76 (Pubitemid 34248123)
-
(2002)
Breast Cancer Research
, vol.4
, Issue.2
, pp. 70-76
-
-
Gasco, M.1
Shami, S.2
Crook, T.3
-
15
-
-
84898774102
-
Development of QSAR-improved statistical potential for the structure-based analysis of protein-peptide binding affinities
-
Han K, Wu G, Lv F (2013) Development of QSAR-improved statistical potential for the structure-based analysis of protein-peptide binding affinities. Mol Inf 32:783-792
-
(2013)
Mol Inf
, vol.32
, pp. 783-792
-
-
Han, K.1
Wu, G.2
Lv, F.3
-
16
-
-
77951666362
-
Toward quantitative characterization of the binding profile between the human amphiphysin-1 SH3 domain and its peptide ligands
-
He P, Wu W, Wang HD, Yang K, Liao KL, Zhang W (2010) Toward quantitative characterization of the binding profile between the human amphiphysin-1 SH3 domain and its peptide ligands. Amino Acids 38:1209-1218
-
(2010)
Amino Acids
, vol.38
, pp. 1209-1218
-
-
He, P.1
Wu, W.2
Wang, H.D.3
Yang, K.4
Liao, K.L.5
Zhang, W.6
-
17
-
-
39049111013
-
Characterization of domain-peptide interaction interface: A case study on the amphiphysin-1 SH3 domain
-
Hou T, Zhang W, Case DA, Wang W (2008) Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain. J Mol Biol 376:1201-1214
-
(2008)
J Mol Biol
, vol.376
, pp. 1201-1214
-
-
Hou, T.1
Zhang, W.2
Case, D.A.3
Wang, W.4
-
18
-
-
34548780897
-
Efficient p53 activation and apoptosis by simultaneous disruption of binding to MDM2 and MDMX
-
DOI 10.1158/0008-5472.CAN-07-1140
-
Hu B, Gilkes DM, Chen J (2007) Efficient p53 activation and apoptosis by simultaneous disruption of binding to MDM2 and MDMX. Cancer Res 67:8810-8817 (Pubitemid 47437457)
-
(2007)
Cancer Research
, vol.67
, Issue.18
, pp. 8810-8817
-
-
Hu, B.1
Gilkes, D.M.2
Chen, J.3
-
19
-
-
79952232216
-
Global cancer statistics
-
Jemal A, Bray F, Center MM, Ferlay J, Ward E, Forman D (2011) Global cancer statistics. CA Cancer J Clin 61:69-90
-
(2011)
CA Cancer J Clin
, vol.61
, pp. 69-90
-
-
Jemal, A.1
Bray, F.2
Center, M.M.3
Ferlay, J.4
Ward, E.5
Forman, D.6
-
20
-
-
84882336075
-
Structure-based prediction of domain-peptide binding affinity by dissecting residue interaction profile at complex interface: A case study on CAL PDZ domain
-
Jin R, Ma Y, Qin L, Ni Z (2013) Structure-based prediction of domain-peptide binding affinity by dissecting residue interaction profile at complex interface: a case study on CAL PDZ domain. Protein Pept Lett 20:1018-1028
-
(2013)
Protein Pept Lett
, vol.20
, pp. 1018-1028
-
-
Jin, R.1
Ma, Y.2
Qin, L.3
Ni, Z.4
-
21
-
-
84879781689
-
Rational design of angiotensin-I-converting enzyme inhibitory peptides by integrating in silico modeling and an in vitro assay
-
Jing T, Feng J, Li D, Liu J, He G (2013) Rational design of angiotensin-I-converting enzyme inhibitory peptides by integrating in silico modeling and an in vitro assay. ChemMedChem 8:1057-1066
-
(2013)
ChemMedChem
, vol.8
, pp. 1057-1066
-
-
Jing, T.1
Feng, J.2
Li, D.3
Liu, J.4
He, G.5
-
22
-
-
68949119587
-
Assessment of helical interfaces in protein-protein interactions
-
Jochim AL, Arora PS (2009) Assessment of helical interfaces in protein-protein interactions. Mol BioSyst 5:924-926
-
(2009)
Mol BioSyst
, vol.5
, pp. 924-926
-
-
Jochim, A.L.1
Arora, P.S.2
-
23
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
DOI 10.1021/ar000033j
-
Kollman PA, Massova I, Reyes C, Kuhn B, Huo SH (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 33:889-897 (Pubitemid 32056774)
-
(2000)
Accounts of Chemical Research
, vol.33
, Issue.12
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
-
24
-
-
77951766329
-
Systematic mutational analysis of peptide inhibition of the p53-MDM2/MDMX interactions
-
Li C, Pazgier M, Li C, Yuan W, Liu M, Wei G, Lu WY, Lu W (2010) Systematic mutational analysis of peptide inhibition of the p53-MDM2/MDMX interactions. J Mol Biol 398:200-213
-
(2010)
J Mol Biol
, vol.398
, pp. 200-213
-
-
Li, C.1
Pazgier, M.2
Li, C.3
Yuan, W.4
Liu, M.5
Wei, G.6
Lu, W.Y.7
Lu, W.8
-
26
-
-
0000823044
-
BLEEP - Potential of mean force describing protein-ligand interactions: I. Generating potential
-
Mitchell JBO, Laskowski RA, Alex A, Thornton JM (1999) Potential of mean force describing protein-ligand interactions: I. Generating potential. J Comput Chem 20:1165-1176 (Pubitemid 129651749)
-
(1999)
Journal of Computational Chemistry
, vol.20
, Issue.11
, pp. 1165-1176
-
-
Mitchell, J.B.O.1
Laskowski, R.A.2
Alex, A.3
Thornton, J.M.4
-
27
-
-
49549083915
-
Peptide-mediated interactions in biological systems: New discoveries and applications
-
Petsalaki E, Russell RB (2008) Peptide-mediated interactions in biological systems: new discoveries and applications. Curr Opin Biotech 19:344-350
-
(2008)
Curr Opin Biotech
, vol.19
, pp. 344-350
-
-
Petsalaki, E.1
Russell, R.B.2
-
28
-
-
79952523293
-
The structure-based design of Mdm2/Mdmx-p53 inhibitors gets serious
-
Popowicz GM, Domling A, Holak TA (2011) The structure-based design of Mdm2/Mdmx-p53 inhibitors gets serious. Angew Chem Int Ed 50:2680-2688
-
(2011)
Angew Chem Int Ed
, vol.50
, pp. 2680-2688
-
-
Popowicz, G.M.1
Domling, A.2
Holak, T.A.3
-
29
-
-
33646940952
-
Numerical-integration of cartesian equations of motion of a system with constraints: Moleculardynamics of n-alkanes
-
Ryckaert J, Ciccotti G, Berendsen HJC (1977) Numerical-integration of cartesian equations of motion of a system with constraints: moleculardynamics of n-alkanes. J Comput Phys 23:327-341
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
30
-
-
84864452901
-
PEP-FOLD: An updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides
-
Thévenet P, Shen Y, Maupetit J, Guyon F, Derreumaux P, Tufféry P (2012) PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides. Nucleic Acids Res 40:W288-W293
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Thévenet, P.1
Shen, Y.2
Maupetit, J.3
Guyon, F.4
Derreumaux, P.5
Tufféry, P.6
-
31
-
-
14244273182
-
Theory and applications of the Generalized Born solvation model in macromolecular simulations
-
DOI 10.1002/1097-0282(2000)56:4<275::AID-BIP10024
-
Tsui V, Case DA (2000) Theory and applications of the generalized Born solvation model in macromolecular simulations. Biopolymers 56:275-291 (Pubitemid 34105875)
-
(2000)
Biopolymers
, vol.56
, Issue.4
, pp. 275-291
-
-
Tsui, V.1
Case, D.A.2
-
32
-
-
75549088586
-
PepX: A structural database of nonredundant protein-peptide complexes
-
Vanhee P, Reumers J, Stricher F, Baeten L, Serrano L, Schymkowitz J, Rousseau F (2010) PepX: a structural database of nonredundant protein-peptide complexes. Nucleic Acids Res 38:D545-D551
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Vanhee, P.1
Reumers, J.2
Stricher, F.3
Baeten, L.4
Serrano, L.5
Schymkowitz, J.6
Rousseau, F.7
-
33
-
-
84865714324
-
Cell penetrating peptides fused to a thermally targeted biopolymer drug carrier improve the delivery and antitumor efficacy of an acid-sensitive doxorubicin derivative
-
Walker L, Perkins E, Kratz F, Raucher D (2012) Cell penetrating peptides fused to a thermally targeted biopolymer drug carrier improve the delivery and antitumor efficacy of an acid-sensitive doxorubicin derivative. Int J Pharm 436:825-832
-
(2012)
Int J Pharm
, vol.436
, pp. 825-832
-
-
Walker, L.1
Perkins, E.2
Kratz, F.3
Raucher, D.4
-
34
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
Wallace AC, Laskowski RA, Thornton JM (1995) LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Eng 8:127-134
-
(1995)
Protein Eng
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
35
-
-
56349095598
-
SCWRL and MolIDE: Computer programs for side-chain conformation prediction and homology modeling
-
Wang Q, Canutescu AA, Dunbrack RL (2008) SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling. Nat Protoc 3:1832-1847
-
(2008)
Nat Protoc
, vol.3
, pp. 1832-1847
-
-
Wang, Q.1
Canutescu, A.A.2
Dunbrack, R.L.3
-
36
-
-
84864041661
-
Targeting the MDM2-p53 protein-protein interaction for new cancer therapeutics
-
Wang S, Zhao Y, Bernard D, Aguilar A, Kumar S (2012) Targeting the MDM2-p53 protein-protein interaction for new cancer therapeutics. Top Med Chem 8:57-80
-
(2012)
Top Med Chem
, vol.8
, pp. 57-80
-
-
Wang, S.1
Zhao, Y.2
Bernard, D.3
Aguilar, A.4
Kumar, S.5
-
37
-
-
84880876654
-
The impact of p53 in predicting clinical outcome of breast cancer patients with visceral metastasis
-
Yang P, Du CW, Kwan M, Liang SX, Zhang GJ (2013) The impact of p53 in predicting clinical outcome of breast cancer patients with visceral metastasis. Sci Rep 3:2246
-
(2013)
Sci Rep
, vol.3
, pp. 2246
-
-
Yang, P.1
Du, C.W.2
Kwan, M.3
Liang, S.X.4
Zhang, G.J.5
-
38
-
-
65449123873
-
2D depiction of nonbonding interactions for protein complexes
-
Zhou P, Tian F, Shang Z (2009) 2D depiction of nonbonding interactions for protein complexes. J Comput Chem 30:940-951
-
(2009)
J Comput Chem
, vol.30
, pp. 940-951
-
-
Zhou, P.1
Tian, F.2
Shang, Z.3
-
39
-
-
77956045439
-
Systematic classification and analysis of themes in protein-DNA recognition
-
Zhou P, Tian F, Ren Y, Shang Z (2010) Systematic classification and analysis of themes in protein-DNA recognition. J Chem Inf Model 50:1476-1488
-
(2010)
J Chem Inf Model
, vol.50
, pp. 1476-1488
-
-
Zhou, P.1
Tian, F.2
Ren, Y.3
Shang, Z.4
-
40
-
-
84877997444
-
Computational peptidology: A new and promising approach to therapeutic peptide design
-
Zhou P, Wang C, Ren Y, Yang C, Tian F (2013) Computational peptidology: a new and promising approach to therapeutic peptide design. Curr Med Chem 20:1985-1996
-
(2013)
Curr Med Chem
, vol.20
, pp. 1985-1996
-
-
Zhou, P.1
Wang, C.2
Ren, Y.3
Yang, C.4
Tian, F.5
|