-
1
-
-
54349099736
-
TokenRNA: A new type of sequence-specific, label-free fluorescent biosensor for folded RNA molecules
-
Afonin KA, Danilov EO, Novikova IV, Leontis NB. 2008. TokenRNA: a new type of sequence-specific, label-free fluorescent biosensor for folded RNA molecules. Chembiochem 9: 1902-1905.
-
(2008)
Chembiochem
, vol.9
, pp. 1902-1905
-
-
Afonin, K.A.1
Danilov, E.O.2
Novikova, I.V.3
Leontis, N.B.4
-
2
-
-
84864206957
-
DNA circuits as amplifiers for the detection of nucleic acids on a paperfluidic platform
-
Allen PB, Arshad SA, Li B, Chen X, Ellington AD. 2012. DNA circuits as amplifiers for the detection of nucleic acids on a paperfluidic platform. Lab Chip 12: 2951-2958.
-
(2012)
Lab Chip
, vol.12
, pp. 2951-2958
-
-
Allen, P.B.1
Arshad, S.A.2
Li, B.3
Chen, X.4
Ellington, A.D.5
-
3
-
-
65549170920
-
Self-assembly of a nanoscale DNA box with a controllable lid
-
Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, Golas MM, Sander B, Stark H, Oliveira CLP, et al. 2009. Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459: 73-76.
-
(2009)
Nature
, vol.459
, pp. 73-76
-
-
Andersen, E.S.1
Dong, M.2
Nielsen, M.M.3
Jahn, K.4
Subramani, R.5
Mamdouh, W.6
Golas, M.M.7
Sander, B.8
Stark, H.9
Oliveira, C.L.P.10
-
5
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. 2002. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci 99: 9697 -9702.
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
6
-
-
84898955259
-
Design and application of cotranscriptional non-enzymatic RNA circuits and signal transducers
-
Bhadra S, Ellington AD. 2014. Design and application of cotranscriptional non-enzymatic RNA circuits and signal transducers. Nucleic Acids Res 42: e58.
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Bhadra, S.1
Ellington, A.D.2
-
7
-
-
84862963406
-
Expanding the rule set of DNA circuitry with associative toehold activation
-
Chen X. 2012. Expanding the rule set of DNA circuitry with associative toehold activation. J Am Chem Soc 134: 263-271.
-
(2012)
J Am Chem Soc
, vol.134
, pp. 263-271
-
-
Chen, X.1
-
10
-
-
78149287963
-
Programmable in situ amplification for multiplexed imaging of mRNA expression
-
Choi HM, Chang JY, Trinh le A, Padilla JE, Fraser SE, Pierce NA. 2010. Programmable in situ amplification for multiplexed imaging of mRNA expression. Nat Biotechnol 28: 1208-1212.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1208-1212
-
-
Choi, H.M.1
Chang, J.Y.2
Trinhle, A.3
Padilla, J.E.4
Fraser, S.E.5
Pierce, N.A.6
-
11
-
-
0026418667
-
Nucleic acid sequence-based amplification
-
Compton J. 1991. Nucleic acid sequence-based amplification. Nature 350: 91-92.
-
(1991)
Nature
, vol.350
, pp. 91-92
-
-
Compton, J.1
-
12
-
-
44449122485
-
Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules
-
Constantin TP, Silva GL, Robertson KL, Hamilton TP, Fague K, Waggoner AS, Armitage BA. 2008. Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules. Org Lett 10: 1561-1564.
-
(2008)
Org Lett
, vol.10
, pp. 1561-1564
-
-
Constantin, T.P.1
Silva, G.L.2
Robertson, K.L.3
Hamilton, T.P.4
Fague, K.5
Waggoner, A.S.6
Armitage, B.A.7
-
13
-
-
0043285072
-
A partition function algorithm for nucleic acid secondary structure including pseudoknots
-
Dirks RM, Pierce NA. 2003. A partition function algorithm for nucleic acid secondary structure including pseudoknots. J Comput Chem 24: 1664-1677.
-
(2003)
J Comput Chem
, vol.24
, pp. 1664-1677
-
-
Dirks, R.M.1
Pierce, N.A.2
-
14
-
-
3042554001
-
An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots
-
Dirks RM, Pierce NA. 2004. An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots. J Comput Chem 25: 1295-1304.
-
(2004)
J Comput Chem
, vol.25
, pp. 1295-1304
-
-
Dirks, R.M.1
Pierce, N.A.2
-
15
-
-
33847609597
-
Thermodynamic analysis of interacting nucleic acid strands
-
DOI 10.1137/060651100
-
Dirks RM, Bois JS, Schaeffer JM, Winfree E, Pierce NA. 2007. Thermodynamic analysis of interacting nucleic acid strands. SIAM Rev 49: 65-88. (Pubitemid 46351352)
-
(2007)
SIAM Review
, vol.49
, Issue.1
, pp. 65-88
-
-
Dirks, R.M.1
Bois, J.S.2
Schaeffer, J.M.3
Winfree, E.4
Pierce, N.A.5
-
16
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington AD, Szostak JW. 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
17
-
-
79951979043
-
Modular blue fluorescent RNA sensors for label-free detection of target molecules
-
Furutani C, Shinomiya K, Aoyama Y, Yamada K, Sando S. 2010. Modular blue fluorescent RNA sensors for label-free detection of target molecules. Mol Biosyst 6: 1569-1571.
-
(2010)
Mol Biosyst
, vol.6
, pp. 1569-1571
-
-
Furutani, C.1
Shinomiya, K.2
Aoyama, Y.3
Yamada, K.4
Sando, S.5
-
19
-
-
68149131856
-
Kinetic optimization of a protein-responsive aptamer beacon
-
Hall B, Cater S, Levy M, Ellington AD.2009. Kinetic optimization of a protein-responsive aptamer beacon. Biotechnol Bioeng 103: 1049-1059.
-
(2009)
Biotechnol Bioeng
, vol.103
, pp. 1049-1059
-
-
Hall, B.1
Cater, S.2
Levy, M.3
Ellington, A.D.4
-
20
-
-
77957915679
-
Folding and cutting DNA into reconfigurable topological nanostructures
-
Han DR, Pal S, Liu Y, Yan H. 2010. Folding and cutting DNA into reconfigurable topological nanostructures. Nat Nanotechnol 5: 712-717.
-
(2010)
Nat Nanotechnol
, vol.5
, pp. 712-717
-
-
Han, D.R.1
Pal, S.2
Liu, Y.3
Yan, H.4
-
21
-
-
0032528327
-
Pausing of reverse transcriptase on retroviral RNA templates is influenced by secondary structures both 5' and 3' of the catalytic site
-
DOI 10.1093/nar/26.14.3433
-
Harrison GP, Mayo MS, Hunter E, Lever AML. 1998. Pausing of reverse transcriptase on retroviral RNA templates is influenced by secondary structures both 5′ and 3′ of the catalytic site. Nucleic Acids Res 26: 3433-3442. (Pubitemid 28321409)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.14
, pp. 3433-3442
-
-
Harrison, G.P.1
Mayo, M.S.2
Hunter, E.3
Lever, A.M.L.4
-
22
-
-
0032437793
-
Isolation and characterization of fluorophore-binding RNA aptamers
-
DOI 10.1016/S1359-0278(98)00059-5
-
Holeman LA, Robinson SL, Szostak JW, Wilson C. 1998. Isolation and characterization of fluorophore-binding RNA aptamers. Fold Des 3: 423-431. (Pubitemid 29023608)
-
(1998)
Folding and Design
, vol.3
, Issue.6
, pp. 423-431
-
-
Holeman, L.A.1
Robinson, S.L.2
Szostak, J.W.3
Wilson, C.4
-
24
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
DOI 10.1038/nbt986
-
Isaacs FJ, Dwyer DJ, Ding CM, Pervouchine DD, Cantor CR, Collins JJ. 2004. Engineered riboregulators enable post-transcriptional control of gene expression. Nat Biotechnol 22: 841-847. (Pubitemid 38886602)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.7
, pp. 841-847
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Ding, C.3
Pervouchine, D.D.4
Cantor, C.R.5
Collins, J.J.6
-
25
-
-
84878226171
-
Real-time detection of isothermal amplification reactions with thermostable catalytic hairpin assembly
-
Jiang YS, Li B, Milligan JN, Bhadra S, Ellington AD. 2013. Real-time detection of isothermal amplification reactions with thermostable catalytic hairpin assembly. J Am Chem Soc 135: 7430-7433.
-
(2013)
J Am Chem Soc
, vol.135
, pp. 7430-7433
-
-
Jiang, Y.S.1
Li, B.2
Milligan, J.N.3
Bhadra, S.4
Ellington, A.D.5
-
26
-
-
84875784381
-
RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP
-
Kellenberger CA, Wilson SC, Sales-Lee J, Hammond MC. 2013. RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP. J Am Chem Soc 135: 4906-4909.
-
(2013)
J Am Chem Soc
, vol.135
, pp. 4906-4909
-
-
Kellenberger, C.A.1
Wilson, S.C.2
Sales-Lee, J.3
Hammond, M.C.4
-
27
-
-
79551599731
-
Synthetic in vitro transcriptional oscillators
-
Kim J, Winfree E. 2011. Synthetic in vitro transcriptional oscillators. Mol Syst Biol 7: 465.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 465
-
-
Kim, J.1
Winfree, E.2
-
28
-
-
33846116559
-
Construction of an in vitro bistable circuit from synthetic transcriptional switches
-
Kim J, White KS, Winfree E. 2006. Construction of an in vitro bistable circuit from synthetic transcriptional switches. Mol Syst Biol 2: 68.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 68
-
-
Kim, J.1
White, K.S.2
Winfree, E.3
-
29
-
-
24744465188
-
Binary malachite green aptamer for fluorescent detection of nucleic acids
-
DOI 10.1021/ja0529788
-
Kolpashchikov DM. 2005. Binary malachite green aptamer for fluorescent detection of nucleic acids. J Am Chem Soc 127: 12442-12443. (Pubitemid 41292134)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.36
, pp. 12442-12443
-
-
Kolpashchikov, D.M.1
-
30
-
-
0029121625
-
Relative thermodynamic stability of DNA, RNA, and DNA:RNA hybrid duplexes: Relationship with base composition and structure
-
Lesnik EA, Freier SM. 1995. Relative thermodynamic stability of DNA, RNA, and DNA:RNA hybrid duplexes: relationship with base composition and structure. Biochemistry 34: 10807-10815.
-
(1995)
Biochemistry
, vol.34
, pp. 10807-10815
-
-
Lesnik, E.A.1
Freier, S.M.2
-
31
-
-
39749179700
-
Aptamer-based optical probes with separated molecular recognition and signal transduction modules
-
DOI 10.1021/ja076787b
-
Li N, Ho CM. 2008. Aptamer-based optical probes with separated molecular recognition and signal transduction modules. J Am Chem Soc 130: 2380-2381. (Pubitemid 351304721)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.8
, pp. 2380-2381
-
-
Li, N.1
Ho, C.-M.2
-
32
-
-
80052504402
-
Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods
-
Li B, Ellington AD, Chen X. 2011. Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods. Nucleic Acids Res 39: e110.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Li, B.1
Ellington, A.D.2
Chen, X.3
-
33
-
-
84867045168
-
Adapting enzyme-free DNA circuits to the detection of loop-mediated isothermal amplification reactions
-
Li B, Chen X, Ellington AD. 2012. Adapting enzyme-free DNA circuits to the detection of loop-mediated isothermal amplification reactions. Anal Chem 84: 8371-8377.
-
(2012)
Anal Chem
, vol.84
, pp. 8371-8377
-
-
Li, B.1
Chen, X.2
Ellington, A.D.3
-
34
-
-
29344462970
-
Fast colorimetric sensing of adenosine and cocaine based on a general sensor design involving aptamers and nanoparticles
-
DOI 10.1002/anie.200502589
-
Liu JW, Lu Y. 2006. Fast colorimetric sensing of adenosine and cocaine based on a general sensor design involving aptamers and nanoparticles. Angew Chem Int Ed 45: 90-94. (Pubitemid 43003993)
-
(2006)
Angewandte Chemie - International Edition
, vol.45
, Issue.1
, pp. 90-94
-
-
Liu, J.1
Lu, Y.2
-
36
-
-
77951251659
-
Folding-based electrochemical biosensors: The case for responsive nucleic acid architectures
-
Lubin AA, Plaxco KW. 2010. Folding-based electrochemical biosensors: the case for responsive nucleic acid architectures. Acc Chem Res 43: 496-505.
-
(2010)
Acc Chem Res
, vol.43
, pp. 496-505
-
-
Lubin, A.A.1
Plaxco, K.W.2
-
37
-
-
79957700542
-
Versatile RNA-sensing transcriptional regulators for engineering genetic networks
-
Lucks JB, Qi L, Mutalik VK, Wang D, Arkin AP. 2011. Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc Natl Acad Sci 108: 8617-8622.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 8617-8622
-
-
Lucks, J.B.1
Qi, L.2
Mutalik, V.K.3
Wang, D.4
Arkin, A.P.5
-
38
-
-
84859842558
-
Rationally designed families of orthogonal RNA regulators of translation
-
Mutalik VK, Qi L, Guimaraes JC, Lucks JB, Arkin AP. 2012. Rationally designed families of orthogonal RNA regulators of translation. Nat Chem Biol 8: 447-454.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 447-454
-
-
Mutalik, V.K.1
Qi, L.2
Guimaraes, J.C.3
Lucks, J.B.4
Arkin, A.P.5
-
39
-
-
84865016402
-
Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy
-
Nakayama S, Luo YL, Zhou J, Dayie TK, Sintim HO. 2012. Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy. Chem Commun 48: 9059-9061.
-
(2012)
Chem Commun
, vol.48
, pp. 9059-9061
-
-
Nakayama, S.1
Luo, Y.L.2
Zhou, J.3
Dayie, T.K.4
Sintim, H.O.5
-
40
-
-
3843054927
-
Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells
-
Nitin N, Santangelo PJ, Kim G, Nie SM, Bao G. 2004. Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells. Nucleic Acids Res 32: e58.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Nitin, N.1
Santangelo, P.J.2
Kim, G.3
Nie, S.M.4
Bao, G.5
-
41
-
-
0037462083
-
Structure-switching signaling aptamers
-
DOI 10.1021/ja028962o
-
Nutiu R, Li Y. 2003. Structure-switching signaling aptamers. J Am Chem Soc 125: 4771-4778. (Pubitemid 36505368)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.16
, pp. 4771-4778
-
-
Nutiu, R.1
Li, Y.2
-
42
-
-
79960959180
-
RNA mimics of green fluorescent protein
-
Paige JS, Wu KY, Jaffrey SR. 2011. RNA mimics of green fluorescent protein. Science 333: 642-646.
-
(2011)
Science
, vol.333
, pp. 642-646
-
-
Paige, J.S.1
Wu, K.Y.2
Jaffrey, S.R.3
-
44
-
-
65849084573
-
Light-up properties of complexes between thiazole orange-small molecule conjugates and aptamers
-
Pei R, Rothman J, Xie YL, Stojanovic MN. 2009. Light-up properties of complexes between thiazole orange-small molecule conjugates and aptamers. Nucleic Acids Res 37: e59.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Pei, R.1
Rothman, J.2
Xie, Y.L.3
Stojanovic, M.N.4
-
45
-
-
34547659860
-
Recombinant RNA technology: The tRNA scaffold
-
DOI 10.1038/nmeth1058, PII NMETH1058
-
Ponchon L, Dardel F. 2007. Recombinant RNA technology: the tRNA scaffold. Nat Methods 4: 571-576. (Pubitemid 47214776)
-
(2007)
Nature Methods
, vol.4
, Issue.7
, pp. 571-576
-
-
Ponchon, L.1
Dardel, F.2
-
46
-
-
84896951733
-
The Spinach RNA aptamer as a characterization tool for synthetic biology
-
doi: 10.1021/sb400089c
-
Pothoulakis G, Ceroni F, Reeve B, Ellis T. 2013. The Spinach RNA aptamer as a characterization tool for synthetic biology. ACS Synth Biol doi: 10.1021/sb400089c.
-
(2013)
ACS Synth Biol
-
-
Pothoulakis, G.1
Ceroni, F.2
Reeve, B.3
Ellis, T.4
-
47
-
-
79957946108
-
Scaling up digital circuit computation with DNA strand displacement cascades
-
Qian L, Winfree E. 2011a. Scaling up digital circuit computation with DNA strand displacement cascades. Science 332: 1196-1201.
-
(2011)
Science
, vol.332
, pp. 1196-1201
-
-
Qian, L.1
Winfree, E.2
-
48
-
-
79957940295
-
A simple DNA gate motif for synthesizing large-scale circuits
-
Qian L, Winfree E. 2011b. A simple DNA gate motif for synthesizing large-scale circuits. J R Soc Interface 8: 1281-1297.
-
(2011)
J R Soc Interface
, vol.8
, pp. 1281-1297
-
-
Qian, L.1
Winfree, E.2
-
49
-
-
79960650829
-
Neural network computation with DNA strand displacement cascades
-
Qian L, Winfree E, Bruck J. 2011. Neural network computation with DNA strand displacement cascades. Nature 475: 368-372.
-
(2011)
Nature
, vol.475
, pp. 368-372
-
-
Qian, L.1
Winfree, E.2
Bruck, J.3
-
50
-
-
50249150245
-
Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: A blue fluorescent RNA
-
Sando S, Narita A, Hayami M, Aoyama Y. 2008. Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA. Chem Commun 33: 3858-3860.
-
(2008)
Chem Commun
, vol.33
, pp. 3858-3860
-
-
Sando, S.1
Narita, A.2
Hayami, M.3
Aoyama, Y.4
-
51
-
-
33845411737
-
Enzyme-free nucleic acid logic circuits
-
DOI 10.1126/science.1132493
-
Seelig G, Soloveichik D, Zhang DY, Winfree E. 2006. Enzyme-free nucleic acid logic circuits. Science 314: 1585-1588. (Pubitemid 44907149)
-
(2006)
Science
, vol.314
, Issue.5805
, pp. 1585-1588
-
-
Seelig, G.1
Soloveichik, D.2
Zhang, D.Y.3
Winfree, E.4
-
52
-
-
0029100233
-
Predicting thermodynamic properties of RNA
-
Serra MJ, Turner DH. 1995. Predicting thermodynamic properties of RNA. Methods Enzymol 259: 242-261.
-
(1995)
Methods Enzymol
, vol.259
, pp. 242-261
-
-
Serra, M.J.1
Turner, D.H.2
-
53
-
-
84883455570
-
Imaging bacterial protein expression using genetically encoded RNA sensors
-
Song W, Strack RL, Jaffrey SR. 2013. Imaging bacterial protein expression using genetically encoded RNA sensors. Nat Methods 10: 873-875.
-
(2013)
Nat Methods
, vol.10
, pp. 873-875
-
-
Song, W.1
Strack, R.L.2
Jaffrey, S.R.3
-
54
-
-
27544478113
-
A strategy for the development of small-molecule-based sensors that strongly fluoresce when bound to a specific RNA
-
DOI 10.1021/ja0530319
-
Sparano BA, Koide K. 2005. A strategy for the development of small-molecule-based sensors that strongly fluoresce when bound to a specific RNA. J Am Chem Soc 127: 14954-14955. (Pubitemid 41547324)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.43
, pp. 14954-14955
-
-
Sparano, B.A.1
Koide, K.2
-
55
-
-
34247523672
-
Fluorescent sensors for specific RNA: A general paradigm using chemistry and combinatorial biology
-
DOI 10.1021/ja070111z
-
Sparano BA, Koide K. 2007. Fluorescent sensors for specific RNA: a general paradigm using chemistry and combinatorial biology. J Am Chem Soc 129: 4785-4794. (Pubitemid 46648777)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.15
, pp. 4785-4794
-
-
Sparano, B.A.1
Koide, K.2
-
56
-
-
84887968813
-
On the biophysics and kinetics of toe-hold-mediated DNA strand displacement
-
Srinivas N, Ouldridge TE, Sulc P, Schaeffer JM, Yurke B, Louis AA, Doye JP, Winfree E. 2013. On the biophysics and kinetics of toe-hold-mediated DNA strand displacement. Nucleic Acids Res 41: 10641-10658.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 10641-10658
-
-
Srinivas, N.1
Ouldridge, T.E.2
Sulc, P.3
Schaeffer, J.M.4
Yurke, B.5
Louis, A.A.6
Doye, J.P.7
Winfree, E.8
-
58
-
-
84888883550
-
A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA
-
Strack RL, Disney MD, Jaffrey SR. 2013. A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA. Nat Methods 10: 1219-1224.
-
(2013)
Nat Methods
, vol.10
, pp. 1219-1224
-
-
Strack, R.L.1
Disney, M.D.2
Jaffrey, S.R.3
-
59
-
-
84891715447
-
Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria
-
Strack RL, Song W, Jaffrey SR. 2014. Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria. Nat Protoc 9: 146-155.
-
(2014)
Nat Protoc
, vol.9
, pp. 146-155
-
-
Strack, R.L.1
Song, W.2
Jaffrey, S.R.3
-
60
-
-
50249098787
-
Aptamer switch probe based on intramolecular displacement
-
Tang Z, Mallikaratchy P, Yang R, Kim YM, Zhu Z, Wang H, Tan W. 2008. Aptamer switch probe based on intramolecular displacement. J Am Chem Soc 130: 11268-11269.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 11268-11269
-
-
Tang, Z.1
Mallikaratchy, P.2
Yang, R.3
Kim, Y.M.4
Zhu, Z.5
Wang, H.6
Tan, W.7
-
61
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage-T4 DNA-polymerase
-
Tuerk C, Gold L. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage-T4 DNA-polymerase. Science 249: 505-510.
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
62
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
DOI 10.1073/pnas.092538799
-
Wang Y, Liu CL, Storey JD, Tibshirani RJ, Herschlag D, Brown PO. 2002. Precision and functional specificity in mRNA decay. Proc Natl Acad Sci 99: 5860-5865. (Pubitemid 34493230)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.9
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
63
-
-
23144463133
-
Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
-
DOI 10.1093/nar/gki447
-
Xayaphoummine A, Bucher T, Isambert H. 2005. Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. Nucleic Acids Res 33: W605-W610. (Pubitemid 44529994)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Xayaphoummine, A.1
Bucher, T.2
Isambert, H.3
-
64
-
-
0041523923
-
Decay rates of human mRNAs: Correlation with functional characteristics and sequence attributes
-
Yang E, van Nimwegen E, Zavolan M, Rajewsky N, Schroeder M, Magnasco M, Darnell JE. 2003. Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Res 13: 1863-1872. (Pubitemid 36987192)
-
(2003)
Genome Research
, vol.13
, Issue.8
, pp. 1863-1872
-
-
Yang, E.1
Van Nimwegen, E.2
Zavolan, M.3
Rajewsky, N.4
Schroeder, M.5
Magnasco, M.6
Darnell Jr., J.E.7
-
65
-
-
38349121586
-
Programming biomolecular self-assembly pathways
-
Yin P, Choi HM, Calvert CR, Pierce NA. 2008. Programming biomolecular self-assembly pathways. Nature 451: 318-322.
-
(2008)
Nature
, vol.451
, pp. 318-322
-
-
Yin, P.1
Choi, H.M.2
Calvert, C.R.3
Pierce, N.A.4
-
66
-
-
0034632783
-
A DNA-fuelled molecular machine made of DNA
-
Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL. 2000. A DNA-fuelled molecular machine made of DNA. Nature 406: 605-608.
-
(2000)
Nature
, vol.406
, pp. 605-608
-
-
Yurke, B.1
Turberfield, A.J.2
Mills, A.P.3
Simmel, F.C.4
Neumann, J.L.5
-
67
-
-
78149355812
-
NUPACK: Analysis and design of nucleic acid systems
-
Zadeh JN, Steenberg CD, Bois JS, Wolfe BR, Pierce MB, Khan AR, Dirks RM, Pierce NA. 2011. NUPACK: analysis and design of nucleic acid systems. J Comput Chem 32: 170-173.
-
(2011)
J Comput Chem
, vol.32
, pp. 170-173
-
-
Zadeh, J.N.1
Steenberg, C.D.2
Bois, J.S.3
Wolfe, B.R.4
Pierce, M.B.5
Khan, A.R.6
Dirks, R.M.7
Pierce, N.A.8
-
68
-
-
79251588725
-
DNA-based fixed gain amplifiers and linear classifier circuits
-
Springer-Verlag, Heidelberg, Berlin, Germany
-
Zhang DY, Seelig G. 2011a. DNA-based fixed gain amplifiers and linear classifier circuits. In DNA Computing and Molecular Programming, Vol. 6518, pp. 176-186. Springer-Verlag, Heidelberg, Berlin, Germany.
-
(2011)
DNA Computing and Molecular Programming
, vol.6518
, pp. 176-186
-
-
Zhang, D.Y.1
Seelig, G.2
-
69
-
-
79251621970
-
Dynamic DNA nanotechnology using strand-displacement reactions
-
Zhang DY, Seelig G. 2011b. Dynamic DNA nanotechnology using strand-displacement reactions. Nat Chem 3: 103-113.
-
(2011)
Nat Chem
, vol.3
, pp. 103-113
-
-
Zhang, D.Y.1
Seelig, G.2
-
70
-
-
72249110882
-
Control of DNA strand displacement kinetics using toehold exchange
-
Zhang DY, Winfree E. 2009. Control of DNA strand displacement kinetics using toehold exchange. J Am Chem Soc 131: 17303-17314.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 17303-17314
-
-
Zhang, D.Y.1
Winfree, E.2
-
71
-
-
84863116178
-
Optimizing the specificity of nucleic acid hybridization
-
Zhang DY, Chen SX, Yin P. 2012. Optimizing the specificity of nucleic acid hybridization. Nat Chem 4: 208-214.
-
(2012)
Nat Chem
, vol.4
, pp. 208-214
-
-
Zhang, D.Y.1
Chen, S.X.2
Yin, P.3
-
72
-
-
84898743524
-
Single-molecule tracking of the transcription cycle by sub-second RNA detection
-
Zhang Z, Revyakin A, Grimm JB, Lavis LD, Tjian R. 2014. Single-molecule tracking of the transcription cycle by sub-second RNA detection. Elife 3: e01775.
-
(2014)
Elife
, vol.3
-
-
Zhang, Z.1
Revyakin, A.2
Grimm, J.B.3
Lavis, L.D.4
Tjian, R.5
|