메뉴 건너뛰기




Volumn 2014, Issue 3, 2014, Pages

Single-molecule tracking of the transcription cycle by sub-second RNA detection

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE; SINGLE STRANDED RNA;

EID: 84898743524     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/elife.01775     Document Type: Article
Times cited : (59)

References (67)
  • 1
    • 0023711743 scopus 로고
    • Transcription termination in Escherichia coli. Measurement of the rate of enzyme release from Rho-independent terminators
    • doi: 10.1016/0022-2836(88)90457-3
    • Arndt KM, Chamberlin MJ. 1988. Transcription termination in Escherichia coli. Measurement of the rate of enzyme release from Rho-independent terminators. Journal of Molecular Biology 202:271-285. doi: 10.1016/0022-2836(88)90457-3.
    • (1988) Journal of Molecular Biology , vol.202 , pp. 271-285
    • Arndt, K.M.1    Chamberlin, M.J.2
  • 2
    • 33745041963 scopus 로고    scopus 로고
    • Single-molecule analysis of RNA polymerase transcription
    • doi: 10.1146/annurev.biophys.35.010406.150153
    • Bai L, Santangelo T, Wang M. 2006. Single-molecule analysis of RNA polymerase transcription. Annual Review of Biophysics and Biomolecular Structure 35:343-360. doi: 10.1146/annurev.biophys.35.010406.150153.
    • (2006) Annual Review of Biophysics and Biomolecular Structure , vol.35 , pp. 343-360
    • Bai, L.1    Santangelo, T.2    Wang, M.3
  • 4
    • 0028027513 scopus 로고
    • Characterization of a set of T7 RNA polymerase active site mutants
    • Bonner G, Lafer EM, Sousa R. 1994. Characterization of a set of T7 RNA polymerase active site mutants. Journal of Biological Chemistry 269:25120-25128.
    • (1994) Journal of Biological Chemistry , vol.269 , pp. 25120-25128
    • Bonner, G.1    Lafer, E.M.2    Sousa, R.3
  • 6
    • 0028881098 scopus 로고
    • The biophysics of DNA hybridization with immobilized oligonucleotide probes
    • doi: 10.1016/S0006-3495(95)80095-0
    • Chan V, Graves DJ, McKenzie SE. 1995. The biophysics of DNA hybridization with immobilized oligonucleotide probes. Biophysical Journal 69:2243-2255. doi: 10.1016/S0006-3495(95)80095-0.
    • (1995) Biophysical Journal , vol.69 , pp. 2243-2255
    • Chan, V.1    Graves, D.J.2    McKenzie, S.E.3
  • 7
    • 84862666457 scopus 로고    scopus 로고
    • A movie of RNA polymerase ii transcription
    • doi: 10.1016/j.cell.2012.06.006
    • Cheung ACM, Cramer P. 2012. A movie of RNA polymerase ii transcription. Cell 149:1431-1437. doi: 10.1016/j.cell.2012.06.006.
    • (2012) Cell , vol.149 , pp. 1431-1437
    • Cheung, A.C.M.1    Cramer, P.2
  • 8
    • 0031779081 scopus 로고    scopus 로고
    • RNA polymerase-promoter interactions: The comings and goings of RNA Polymerase
    • DeHaseth PL, Zupancic ML, Record MT. 1998. RNA polymerase-promoter interactions: the comings and goings of RNA Polymerase. Journal of Bacteriology 180:3019-3025.
    • (1998) Journal of Bacteriology , vol.180 , pp. 3019-3025
    • DeHaseth, P.L.1    Zupancic, M.L.2    Record, M.T.3
  • 10
    • 0038756088 scopus 로고    scopus 로고
    • Cooperation between RNA polymerase molecules in transcription elongation
    • doi: 10.1126/science.1083219
    • Epshtein V, Nudler E. 2003. Cooperation between RNA polymerase molecules in transcription elongation. Science 300:801-805. doi: 10.1126/science.1083219.
    • (2003) Science , vol.300 , pp. 801-805
    • Epshtein, V.1    Nudler, E.2
  • 11
    • 33746743013 scopus 로고    scopus 로고
    • Viewing dynamic assembly of molecular complexes by multi-wavelength single-molecule fluorescence
    • doi: 10.1529/biophysj.106.084004
    • Friedman LJ, Chung J, Gelles J. 2006. Viewing dynamic assembly of molecular complexes by multi-wavelength single-molecule fluorescence. Biophysical Journal 91:1023-1031. doi: 10.1529/biophysj.106.084004.
    • (2006) Biophysical Journal , vol.91 , pp. 1023-1031
    • Friedman, L.J.1    Chung, J.2    Gelles, J.3
  • 12
    • 84857311371 scopus 로고    scopus 로고
    • Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation
    • doi: 10.1016/j.cell.2012.01.018
    • Friedman LJ, Gelles J. 2012. Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation. Cell 148:679-689. doi: 10.1016/j.cell.2012.01.018.
    • (2012) Cell , vol.148 , pp. 679-689
    • Friedman, L.J.1    Gelles, J.2
  • 14
  • 15
    • 33746207804 scopus 로고    scopus 로고
    • Secondary structure effects on DNA hybridization kinetics: A solution versus surface comparison
    • doi: 10.1093/nar/gkl422
    • Gao Y, Wolf LK, Georgiadis RM. 2006. Secondary structure effects on DNA hybridization kinetics: a solution versus surface comparison. Nucleic Acids Research 34:3370-3377. doi: 10.1093/nar/gkl422.
    • (2006) Nucleic Acids Research , vol.34 , pp. 3370-3377
    • Gao, Y.1    Wolf, L.K.2    Georgiadis, R.M.3
  • 16
    • 0016219032 scopus 로고
    • Characterization of T7-specific ribonucleic acid polymerase: IV. Resolution of the major in vitro transcripts by gel electrophoresis
    • Golomb M, Chamberlin M. 1974. Characterization of T7-specific ribonucleic acid polymerase: IV. Resolution of the major in vitro transcripts by gel electrophoresis. Journal of Biological Chemistry 249:2858-2863.
    • (1974) Journal of Biological Chemistry , vol.249 , pp. 2858-2863
    • Golomb, M.1    Chamberlin, M.2
  • 17
    • 0036111913 scopus 로고    scopus 로고
    • Magnetic tweezers: Micromanipulation and force measurement at the molecular level
    • doi: 10.1016/S0006-3495(02)75672-5
    • Gosse C, Croquette V. 2002. Magnetic tweezers: micromanipulation and force measurement at the molecular level. Biophysical Journal 82:3314-3329. doi: 10.1016/S0006-3495(02)75672-5.
    • (2002) Biophysical Journal , vol.82 , pp. 3314-3329
    • Gosse, C.1    Croquette, V.2
  • 19
    • 80051967505 scopus 로고    scopus 로고
    • Stochastic state transitions give rise to phenotypic equilibrium in populations of cancer cells
    • doi: 10.1016/j.cell.2011.07.026
    • Gupta PB, Fillmore CM, Jiang G, Shapira SD, Tao K, Kuperwasser C, Lander ES. 2011. Stochastic state transitions give rise to phenotypic equilibrium in populations of cancer cells. Cell 146:633-644. doi: 10.1016/j.cell.2011.07.026.
    • (2011) Cell , vol.146 , pp. 633-644
    • Gupta, P.B.1    Fillmore, C.M.2    Jiang, G.3    Shapira, S.D.4    Tao, K.5    Kuperwasser, C.6    Lander, E.S.7
  • 20
    • 70349185347 scopus 로고    scopus 로고
    • Transcription dynamics
    • doi: 10.1016/j.molcel.2009.09.005
    • Hager GL, McNally JG, Misteli T. 2009. Transcription dynamics. Molecular Cell 35:741-753. doi: 10.1016/j.molcel.2009.09.005.
    • (2009) Molecular Cell , vol.35 , pp. 741-753
    • Hager, G.L.1    McNally, J.G.2    Misteli, T.3
  • 21
    • 67650762824 scopus 로고    scopus 로고
    • Super resolution fluorescence microscopy
    • doi: 10.1146/annurev.biochem.77.061906.092014
    • Huang B, Bates M, Zhuang X. 2010. Super resolution fluorescence microscopy. Annual Review of Biochemistry 78:993-1016. doi: 10.1146/annurev.biochem.77.061906.092014.
    • (2010) Annual Review of Biochemistry , vol.78 , pp. 993-1016
    • Huang, B.1    Bates, M.2    Zhuang, X.3
  • 22
    • 0034721946 scopus 로고    scopus 로고
    • T7 RNA polymerase elongation complex structure and movement
    • doi: 10.1006/jmbi.2000.4150
    • Huang J, Sousa R. 2000. T7 RNA polymerase elongation complex structure and movement. Journal of Molecular Biology 303:347-358. doi: 10.1006/jmbi.2000.4150.
    • (2000) Journal of Molecular Biology , vol.303 , pp. 347-358
    • Huang, J.1    Sousa, R.2
  • 23
    • 0028950288 scopus 로고
    • RNA polymerase II ternary complexes may become arrested after transcribing to within 10 bases of the end of linear templates
    • doi: 10.1074/jbc.270.5.2290
    • Izban MG, Samkurashvili I, Luse DS. 1995. RNA polymerase II ternary complexes may become arrested after transcribing to within 10 bases of the end of linear templates. Journal of Biological Chemistry 270:2290-2297. doi: 10.1074/jbc.270.5.2290.
    • (1995) Journal of Biological Chemistry , vol.270 , pp. 2290-2297
    • Izban, M.G.1    Samkurashvili, I.2    Luse, D.S.3
  • 24
    • 0037134940 scopus 로고    scopus 로고
    • Intramolecular dimers: A new strategy to fluorescence quenching in dual-labeled oligonucleotide probes
    • doi: 10.1021/ja025678o
    • Johansson MK, Fidder H, Dick D, Cook RM. 2002. Intramolecular dimers: a new strategy to fluorescence quenching in dual-labeled oligonucleotide probes. Journal of the American Chemical Society 124:6950-6956. doi: 10.1021/ja025678o.
    • (2002) Journal of the American Chemical Society , vol.124 , pp. 6950-6956
    • Johansson, M.K.1    Fidder, H.2    Dick, D.3    Cook, R.M.4
  • 25
    • 33751212468 scopus 로고    scopus 로고
    • Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism
    • doi: 10.1126/science.1131399
    • Kapanidis AN, Margeat E, Ho SO, Kortkhonjia E, Weiss S, Ebright RH. 2006. Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science 314:1144-1147. doi: 10.1126/science.1131399.
    • (2006) Science , vol.314 , pp. 1144-1147
    • Kapanidis, A.N.1    Margeat, E.2    Ho, S.O.3    Kortkhonjia, E.4    Weiss, S.5    Ebright, R.H.6
  • 26
    • 35949011257 scopus 로고
    • Easily calculable measure for the complexity of spatiotemporal patterns
    • doi: 10.1103/PhysRevA.36.842
    • Kaspar F, Schuster H. 1987. Easily calculable measure for the complexity of spatiotemporal patterns. Physical Review A 36:842-848. doi: 10.1103/PhysRevA.36.842.
    • (1987) Physical Review A , vol.36 , pp. 842-848
    • Kaspar, F.1    Schuster, H.2
  • 29
    • 0026621339 scopus 로고
    • Implication of RNA structure on antisense oligonucleotide hybridization kinetics
    • doi: 10.1021/bi00163a013
    • Lima WF, Monia BP, Ecker DJ, Freier SM. 1992. Implication of RNA structure on antisense oligonucleotide hybridization kinetics. Biochemistry 31:12055-12061. doi: 10.1021/bi00163a013.
    • (1992) Biochemistry , vol.31 , pp. 12055-12061
    • Lima, W.F.1    Monia, B.P.2    Ecker, D.J.3    Freier, S.M.4
  • 30
    • 84859424298 scopus 로고    scopus 로고
    • Transcription goes digital
    • doi: 10.1038/embor.2012.31
    • Lionnet T, Singer RH. 2012. Transcription goes digital. EMBO Reports 13:313-321. doi: 10.1038/embor.2012.31.
    • (2012) EMBO Reports , vol.13 , pp. 313-321
    • Lionnet, T.1    Singer, R.H.2
  • 31
    • 84879682825 scopus 로고    scopus 로고
    • Transcription under torsion
    • doi: 10.1126/science.1235441
    • Ma J, Bai L, Wang M. 2013. Transcription under torsion. Science 340:1580-1583. doi: 10.1126/science.1235441.
    • (2013) Science , vol.340 , pp. 1580-1583
    • Ma, J.1    Bai, L.2    Wang, M.3
  • 32
    • 0036835759 scopus 로고    scopus 로고
    • Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes
    • Marras SAE, Kramer FR, Tyagi S. 2002. Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes. Nucleic Acids Research 30:e122.
    • (2002) Nucleic Acids Research , vol.30
    • Marras, S.A.E.1    Kramer, F.R.2    Tyagi, S.3
  • 33
    • 0023198428 scopus 로고
    • Kinetic analysis of T7 RNA polymerase-promoter interactions with small synthetic promoters
    • doi: 10.1021/bi00384a006
    • Martin CT, Coleman JE. 1987. Kinetic analysis of T7 RNA polymerase-promoter interactions with small synthetic promoters. Biochemistry 26:2690-2696. doi: 10.1021/bi00384a006.
    • (1987) Biochemistry , vol.26 , pp. 2690-2696
    • Martin, C.T.1    Coleman, J.E.2
  • 34
    • 0027155574 scopus 로고
    • Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing single-stranded regions
    • doi: 10.1021/bi00067a017
    • Maslak M, Martin CT. 1993. Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing single-stranded regions. Biochemistry 32:4281-4285. doi: 10.1021/bi00067a017.
    • (1993) Biochemistry , vol.32 , pp. 4281-4285
    • Maslak, M.1    Martin, C.T.2
  • 35
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • doi: 10.1093/nar/15.21.8783
    • Milligan JF, Groebe DR, Witherell GW, Uhlenbeck OC. 1987. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Research 15:8783-8798. doi: 10.1093/nar/15.21.8783.
    • (1987) Nucleic Acids Research , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 37
    • 0037308665 scopus 로고    scopus 로고
    • Bacterial RNA polymerases: The wholo story
    • doi: 10.1016/S0959-440X(02)00005-2
    • Murakami KS, Darst SA. 2003. Bacterial RNA polymerases: the wholo story. Current Opinion in Structural Biology 13:31-39. doi: 10.1016/S0959-440X(02)00005-2.
    • (2003) Current Opinion in Structural Biology , vol.13 , pp. 31-39
    • Murakami, K.S.1    Darst, S.A.2
  • 38
    • 0345047725 scopus 로고    scopus 로고
    • Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
    • doi: 10.1016/S0092-8674(03)00845-6
    • Neuman KC, Abbondanzieri EA, Landick R, Gelles J, Block SM. 2003. Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking. Cell 115:437-447. doi: 10.1016/S0092-8674(03)00845-6.
    • (2003) Cell , vol.115 , pp. 437-447
    • Neuman, K.C.1    Abbondanzieri, E.A.2    Landick, R.3    Gelles, J.4    Block, S.M.5
  • 39
    • 0027325195 scopus 로고
    • Differentiation and proliferation of hematopoietic stem cells
    • Ogawa K. 1993. Differentiation and proliferation of hematopoietic stem cells. Blood 81:2844-2853.
    • (1993) Blood , vol.81 , pp. 2844-2853
    • Ogawa, K.1
  • 40
    • 3242892432 scopus 로고    scopus 로고
    • Complexity: An internet resource for analysis of DNA sequence complexity
    • doi: 10.1093/nar/gkh466
    • Orlov YL, Potapov VN. 2004. Complexity: an internet resource for analysis of DNA sequence complexity. Nucleic Acids Research 32:W628-W633. doi: 10.1093/nar/gkh466.
    • (2004) Nucleic Acids Research , vol.32
    • Orlov, Y.L.1    Potapov, V.N.2
  • 41
    • 84878781230 scopus 로고    scopus 로고
    • Copper-catalyzed azide-alkyne click chemistry for bioconjugation
    • doi: 10.1002/9780470559277.ch110148
    • Presolski SI, Hong VP, Finn MG. 2011. Copper-catalyzed azide-alkyne click chemistry for bioconjugation. Current Protocols in Chemical Biology 3:153-162. doi: 10.1002/9780470559277.ch110148.
    • (2011) Current Protocols in Chemical Biology , vol.3 , pp. 153-162
    • Presolski, S.I.1    Hong, V.P.2    Finn, M.G.3
  • 42
    • 67650319009 scopus 로고    scopus 로고
    • Single-molecule approaches to stochastic gene expression
    • doi: 10.1146/annurev.biophys.37.032807.125928
    • Raj A, Van Oudenaarden A. 2009. Single-molecule approaches to stochastic gene expression. Annual Review of Biophysics 38:255-270. doi: 10.1146/annurev.biophys.37.032807.125928.
    • (2009) Annual Review of Biophysics , vol.38 , pp. 255-270
    • Raj, A.1    Van Oudenaarden, A.2
  • 44
    • 33751218319 scopus 로고    scopus 로고
    • Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching
    • doi: 10.1126/science.1131398
    • Revyakin A, Liu C, Ebright RH, Strick TR. 2006. Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching. Science 314:1139-1143. doi: 10.1126/science.1131398.
    • (2006) Science , vol.314 , pp. 1139-1143
    • Revyakin, A.1    Liu, C.2    Ebright, R.H.3    Strick, T.R.4
  • 45
  • 46
    • 84874113188 scopus 로고    scopus 로고
    • The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: Implications for transcription start-site selection
    • doi: 10.1016/j.jmb.2012.12.015
    • Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN. 2013. The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection. Journal of Molecular Biology 425:875-885. doi: 10.1016/j.jmb.2012.12.015.
    • (2013) Journal of Molecular Biology , vol.425 , pp. 875-885
    • Robb, N.C.1    Cordes, T.2    Hwang, L.C.3    Gryte, K.4    Duchi, D.5    Craggs, T.D.6    Santoso, Y.7    Weiss, S.8    Ebright, R.H.9    Kapanidis, A.N.10
  • 47
    • 33645028600 scopus 로고    scopus 로고
    • Folding DNA to create nanoscale shapes and patterns
    • doi: 10.1038/nature04586
    • Rothemund PWK. 2006. Folding DNA to create nanoscale shapes and patterns. Nature 440:297-302. doi: 10.1038/nature04586.
    • (2006) Nature , vol.440 , pp. 297-302
    • Rothemund, P.W.K.1
  • 49
    • 0346258014 scopus 로고    scopus 로고
    • Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
    • doi: 10.1038/nature02191
    • Shaevitz JW, Abbondanzieri EA, Landick R, Block SM. 2003. Backtracking by single RNA polymerase molecules observed at near-base-pair resolution. Nature 426:684-687. doi: 10.1038/nature02191.
    • (2003) Nature , vol.426 , pp. 684-687
    • Shaevitz, J.W.1    Abbondanzieri, E.A.2    Landick, R.3    Block, S.M.4
  • 50
    • 0942298127 scopus 로고    scopus 로고
    • Promoter binding, initiation, and elongation by bacteriophage T7 RNA polymerase. A single-molecule view of the transcription cycle
    • doi: 10.1074/jbc.M310471200
    • Skinner GM, Baumann CG, Quinn DM, Molloy JE, Hoggett JG. 2004. Promoter binding, initiation, and elongation by bacteriophage T7 RNA polymerase. A single-molecule view of the transcription cycle. Journal of Biological Chemistry 279:3239-3244. doi: 10.1074/jbc.M310471200.
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 3239-3244
    • Skinner, G.M.1    Baumann, C.G.2    Quinn, D.M.3    Molloy, J.E.4    Hoggett, J.G.5
  • 51
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
    • doi: 10.1126/science.271.5250.795
    • Smith SB, Cui Y, Bustamante C. 1996. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science 271:795-799. doi: 10.1126/science.271.5250.795.
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.B.1    Cui, Y.2    Bustamante, C.3
  • 52
    • 0037020232 scopus 로고    scopus 로고
    • The +2 NTP binding drives open complex formation in T7 RNA polymerase
    • doi: 10.1074/jbc.M201600200
    • Stano NM, Levin MK, Patel SS. 2002. The +2 NTP binding drives open complex formation in T7 RNA polymerase. Journal of Biological Chemistry 277:37292-37300. doi: 10.1074/jbc.M201600200.
    • (2002) Journal of Biological Chemistry , vol.277 , pp. 37292-37300
    • Stano, N.M.1    Levin, M.K.2    Patel, S.S.3
  • 53
    • 33645896417 scopus 로고    scopus 로고
    • Rapid binding of T7 RNA polymerase is followed by simultaneous bending and opening of the promoter DNA
    • doi: 10.1021/bi052292s
    • Tang G-Q, Patel SS. 2006. Rapid binding of T7 RNA polymerase is followed by simultaneous bending and opening of the promoter DNA. Biochemistry 45:4947-4956. doi: 10.1021/bi052292s.
    • (2006) Biochemistry , vol.45 , pp. 4947-4956
    • Tang, G.-Q.1    Patel, S.S.2
  • 55
    • 51649113736 scopus 로고    scopus 로고
    • T7 RNA polymerase studied by force measurements varying cofactor concentration
    • doi: 10.1529/biophysj.107.125096
    • Thomen P, Lopez PJ, Bockelmann U, Guillerez J, Dreyfus M, Heslot F. 2008. T7 RNA polymerase studied by force measurements varying cofactor concentration. Biophysical Journal 95:2423-2433. doi: 10.1529/biophysj.107.125096.
    • (2008) Biophysical Journal , vol.95 , pp. 2423-2433
    • Thomen, P.1    Lopez, P.J.2    Bockelmann, U.3    Guillerez, J.4    Dreyfus, M.5    Heslot, F.6
  • 56
    • 0037440736 scopus 로고    scopus 로고
    • Hybridization kinetics and thermodynamics of molecular beacons
    • doi: 10.1093/nar/gkg212
    • Tsourkas A, Behlke MA, Rose SD, Bao G. 2003. Hybridization kinetics and thermodynamics of molecular beacons. Nucleic Acids Research 31:1319-1330. doi: 10.1093/nar/gkg212.
    • (2003) Nucleic Acids Research , vol.31 , pp. 1319-1330
    • Tsourkas, A.1    Behlke, M.A.2    Rose, S.D.3    Bao, G.4
  • 57
    • 84873558007 scopus 로고    scopus 로고
    • The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion
    • doi: 10.1038/nsmb.2472
    • Wang F, Redding S, Finkelstein IJ, Gorman J, Reichman DR, Greene EC. 2012. The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion. Nature Structure Molecular Biology 20:174-181. doi: 10.1038/nsmb.2472.
    • (2012) Nature Structure Molecular Biology , vol.20 , pp. 174-181
    • Wang, F.1    Redding, S.2    Finkelstein, I.J.3    Gorman, J.4    Reichman, D.R.5    Greene, E.C.6
  • 58
    • 5444267847 scopus 로고    scopus 로고
    • Computational identification of antisense oligonucleotides that rapidly hybridize to RNA
    • doi: 10.1089/oli.2004.14.167
    • Wang J-Y, Drlica K. 2004. Computational identification of antisense oligonucleotides that rapidly hybridize to RNA. Oligonucleotides 14:167-175. doi: 10.1089/oli.2004.14.167.
    • (2004) Oligonucleotides , vol.14 , pp. 167-175
    • Wang, J.-Y.1    Drlica, K.2
  • 59
    • 0032582494 scopus 로고    scopus 로고
    • Force and velocity measured for single molecules of RNA polymerase
    • doi: 10.1126/science.282.5390.902
    • Wang MD, Schnitzer MJ, Yin H, Landick R, Gelles J, Block SM. 1998. Force and velocity measured for single molecules of RNA polymerase. Science 282:902-907. doi: 10.1126/science.282.5390.902.
    • (1998) Science , vol.282 , pp. 902-907
    • Wang, M.D.1    Schnitzer, M.J.2    Yin, H.3    Landick, R.4    Gelles, J.5    Block, S.M.6
  • 60
    • 0033548686 scopus 로고    scopus 로고
    • Fluorescence spectroscopy of single biomolecules
    • doi: 10.1126/science.283.5408.1676
    • Weiss S. 1999. Fluorescence spectroscopy of single biomolecules. Science 283:1676-1683. doi: 10.1126/science.283.5408.1676.
    • (1999) Science , vol.283 , pp. 1676-1683
    • Weiss, S.1
  • 61
    • 0036843471 scopus 로고    scopus 로고
    • An open-source oligomicroarray standard for human and mouse
    • doi: 10.1038/nbt1102-1082
    • Wright M, Church GM. 2002. An open-source oligomicroarray standard for human and mouse. Nature Biotechnology 20:1082-1083. doi: 10.1038/nbt1102-1082.
    • (2002) Nature Biotechnology , vol.20 , pp. 1082-1083
    • Wright, M.1    Church, G.M.2
  • 62
    • 67650095196 scopus 로고    scopus 로고
    • Elite and stochastic models for induced pluripotent stem cell generation
    • doi: 10.1038/nature08180
    • Yamanaka S. 2009. Elite and stochastic models for induced pluripotent stem cell generation. Nature 460:49-52. doi: 10.1038/nature08180.
    • (2009) Nature , vol.460 , pp. 49-52
    • Yamanaka, S.1
  • 63
    • 33644856670 scopus 로고    scopus 로고
    • Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides
    • doi: 10.1128/AEM.72.1.733-744.2006
    • Yilmaz LS, Okten HE, Noguera DR. 2006. Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides. Applied and Environmental Microbiology 72:733-744. doi: 10.1128/AEM.72.1.733-744.2006.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 733-744
    • Yilmaz, L.S.1    Okten, H.E.2    Noguera, D.R.3
  • 64
    • 33747647960 scopus 로고    scopus 로고
    • Observed instability of T7 RNA polymerase elongation complexes can be dominated by collision-induced "bumping"
    • doi: 10.1074/jbc.M604369200
    • Zhou Y, Martin CT. 2006. Observed instability of T7 RNA polymerase elongation complexes can be dominated by collision-induced "bumping". Journal of Biological Chemistry 281:24441-24448. doi: 10.1074/jbc.M604369200.
    • (2006) Journal of Biological Chemistry , vol.281 , pp. 24441-24448
    • Zhou, Y.1    Martin, C.T.2
  • 65
    • 27744505584 scopus 로고    scopus 로고
    • Fluorescence quenching by TEMPO: A sub-30 A single-molecule ruler
    • doi: 10.1529/biophysj.105.071027
    • Zhu P, Clamme J-P, Deniz AA. 2005. Fluorescence quenching by TEMPO: a sub-30 A single-molecule ruler. Biophysical Journal 89:L37-L39. doi: 10.1529/biophysj.105.071027.
    • (2005) Biophysical Journal , vol.89
    • Zhu, P.1    Clamme, J.-P.2    Deniz, A.A.3
  • 67
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • doi: 10.1093/nar/gkg595
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31:3406-3415. doi: 10.1093/nar/gkg595.
    • (2003) Nucleic Acids Research , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.