-
1
-
-
0029163460
-
The leucyl/phenylalanyl-tRNA-protein transferase. Overexpression and characterization of substrate recognition, domain structure, and secondary structure
-
Abramochkin G, Shrader TE. 1995. The leucyl/phenylalanyl-tRNA-protein transferase. Overexpression and characterization of substrate recognition, domain structure, and secondary structure. J Biol Chem 270: 20621-20628.
-
(1995)
J Biol Chem
, vol.270
, pp. 20621-20628
-
-
Abramochkin, G.1
Shrader, T.E.2
-
2
-
-
0029788178
-
Aminoacyl-tRNA recognition by the leucyl/phenylalanyl-tRNA-protein transferase
-
DOI 10.1074/jbc.271.37.22901
-
Abramochkin G, Shrader TE. 1996. Aminoacyl-tRNA recognition by the leucyl/phenylalanyl-tRNA-protein transferase. J Biol Chem 271: 22901-22907. (Pubitemid 26304741)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.37
, pp. 22901-22907
-
-
Abramochkin, G.1
Shrader, T.E.2
-
3
-
-
77449133028
-
Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu
-
Agirrezabala X, Frank J. 2009. Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu. Q Rev Biophys 42: 159-200.
-
(2009)
Q Rev Biophys
, vol.42
, pp. 159-200
-
-
Agirrezabala, X.1
Frank, J.2
-
4
-
-
0028216870
-
Escherichia coli elongation-factor-Tu mutants with decreased affinity for aminoacyl-tRNA
-
Andersen C, Wiborg O. 1994. Escherichia coli elongation-factor-Tu mutants with decreased affinity for aminoacyl-tRNA. Eur J Biochem 220: 739-744. (Pubitemid 24107200)
-
(1994)
European Journal of Biochemistry
, vol.220
, Issue.3
, pp. 739-744
-
-
Andersen, C.1
Wiborg, O.2
-
6
-
-
23944520820
-
Predicting the binding affinities of misacylated tRNAs for Thermus thermophilus EF-Tu.GTP
-
DOI 10.1021/bi050204y
-
Asahara H, Uhlenbeck OC. 2005. Predicting the binding affinities of misacylated tRNAs for Thermus thermophilus EF-Tu.GTP. Biochemistry 44: 11254-11261. (Pubitemid 41209060)
-
(2005)
Biochemistry
, vol.44
, Issue.33
, pp. 11254-11261
-
-
Asahara, H.1
Uhlenbeck, O.C.2
-
8
-
-
0027430589
-
Discrimination among E. coli tRNAs with a long variable arm
-
Asahara H, Himeno H, Tamura K, Nameki N, Hasegawa T, Shimizu M. 1993b. Discrimination among E. coli tRNAs with a long variable arm. Nucleic Acids Symp Ser 29: 207-208.
-
(1993)
Nucleic Acids Symp Ser
, vol.29
, pp. 207-208
-
-
Asahara, H.1
Himeno, H.2
Tamura, K.3
Nameki, N.4
Hasegawa, T.5
Shimizu, M.6
-
9
-
-
0032582796
-
In vitro selection of RNAs aminoacylated by Escherichia coli Leucyl-tRNA synthetase
-
DOI 10.1006/jmbi.1998.2111
-
Asahara H, Nameki N, Hasegawa T. 1998. In vitro selection of RNAs aminoacylated by Escherichia coli leucyl-tRNA synthetase. J Mol Biol 283: 605-618. (Pubitemid 28486724)
-
(1998)
Journal of Molecular Biology
, vol.283
, Issue.3
, pp. 605-618
-
-
Asahara, H.1
Nameki, N.2
Hasegawa, T.3
-
10
-
-
0024562943
-
The degradation signal in a short-lived protein
-
DOI 10.1016/0092-8674(89)90635-1
-
Bachmair A, Varshavsky A. 1989. The degradation signal in a short-lived protein. Cell 56: 1019-1032. (Pubitemid 19091014)
-
(1989)
Cell
, vol.56
, Issue.6
, pp. 1019-1032
-
-
Bachmair, A.1
Varshavsky, A.2
-
11
-
-
35348989769
-
The Transamidosome: A Dynamic Ribonucleoprotein Particle Dedicated to Prokaryotic tRNA-Dependent Asparagine Biosynthesis
-
DOI 10.1016/j.molcel.2007.08.017, PII S1097276507005606
-
Bailly M, Blaise M, Lorber B, Becker HD, Kern D. 2007. The transamidosome: Adynamic ribonucleoprotein particle dedicated to prokaryotic tRNA-dependent asparagine biosynthesis. Mol Cell 28: 228-239. (Pubitemid 47599997)
-
(2007)
Molecular Cell
, vol.28
, Issue.2
, pp. 228-239
-
-
Bailly, M.1
Blaise, M.2
Lorber, B.3
Becker, H.D.4
Kern, D.5
-
12
-
-
71549147812
-
tRNAs: Cellular barcodes for amino acids
-
Banerjee R, Chen S, Dare K, Gilreath M, Praetorius-Ibba M, Raina M, Reynolds NM, Rogers T, Roy H, Yadavalli SS, et al. 2010. tRNAs: cellular barcodes for amino acids. FEBS Lett 584: 387-395.
-
(2010)
FEBS Lett
, vol.584
, pp. 387-395
-
-
Banerjee, R.1
Chen, S.2
Dare, K.3
Gilreath, M.4
Praetorius-Ibba, M.5
Raina, M.6
Reynolds, N.M.7
Rogers, T.8
Roy, H.9
Yadavalli, S.S.10
-
14
-
-
0036054290
-
X-ray crystal structure of Staphylococcus aureus FemA
-
Benson TE, Prince DB, Mutchler VT, Curry KA, Ho AM, Sarver RW, Hagadorn JC, Choi GH, Garlick RL. 2002. X-ray crystal structure of Staphylococcus aureus FemA. Structure 10: 1107-1115.
-
(2002)
Structure
, vol.10
, pp. 1107-1115
-
-
Benson, T.E.1
Prince, D.B.2
Mutchler, V.T.3
Curry, K.A.4
Ho, A.M.5
Sarver, R.W.6
Hagadorn, J.C.7
Choi, G.H.8
Garlick, R.L.9
-
15
-
-
1242283845
-
Crystal Structures of Weissella viridescens FemX and Its Complex with UDP-MurNAc-Pentapeptide: Insights into FemABX Family Substrates Recognition
-
DOI 10.1016/S0969-2126(04)00009-7
-
Biarrotte-Sorin S, Maillard AP, Delettre J, Sougakoff W, Arthur M, Mayer C. 2004. Crystal structures of Weissella viridescens FemX and its complex with UDP-MurNAc-pentapeptide: insights into FemABX family substrates recognition. Structure 12: 257-267. (Pubitemid 38224548)
-
(2004)
Structure
, vol.12
, Issue.2
, pp. 257-267
-
-
Biarrotte-Sorin, S.1
Maillard, A.P.2
Delettre, J.3
Sougakoff, W.4
Arthur, M.5
Mayer, C.6
-
16
-
-
58149189877
-
GtRNAdb: A database of transfer RNA genes detected in genomic sequence
-
Chan PP, Lowe TM. 2009. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37: D93-D97.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chan, P.P.1
Lowe, T.M.2
-
17
-
-
2442697841
-
The affinity of elongation factor Tu for an aminoacyl-tRNA is modulated by the esterified amino acid
-
DOI 10.1021/bi036290o
-
Dale T, Sanderson LE, Uhlenbeck OC. 2004. The affinity of elongation factor Tu for an aminoacyl-tRNA is modulated by the esterified amino acid. Biochemistry 43: 6159-6166. (Pubitemid 38669484)
-
(2004)
Biochemistry
, vol.43
, Issue.20
, pp. 6159-6166
-
-
Dale, T.1
Sanderson, L.E.2
Uhlenbeck, O.C.3
-
18
-
-
14644396660
-
Selective charging of tRNA isoacceptors induced by amino-acid starvation
-
DOI 10.1038/sj.embor.7400341
-
Dittmar KA, Sorensen MA, Elf J, Ehrenberg M, Pan T. 2005. Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep 6: 151-157. (Pubitemid 40309412)
-
(2005)
EMBO Reports
, vol.6
, Issue.2
, pp. 151-157
-
-
Dittmar, K.A.1
Sorensen, M.A.2
Elf, J.3
Ehrenberg, M.4
Pan, T.5
-
19
-
-
0030564828
-
Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
-
DOI 10.1006/jmbi.1996.0428
-
Dong H, Nilsson L, Kurland CG. 1996. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J Mol Biol 260: 649-663. (Pubitemid 26270960)
-
(1996)
Journal of Molecular Biology
, vol.260
, Issue.5
, pp. 649-663
-
-
Dong, H.1
Nilsson, L.2
Kurland, C.G.3
-
20
-
-
33847297727
-
The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli
-
DOI 10.1110/ps.062616107
-
Dong X, Kato-Murayama M, Muramatsu T, Mori H, Shirouzu M, Bessho Y, Yokoyama S. 2007. The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli. Protein Sci 16: 528-534. (Pubitemid 46327563)
-
(2007)
Protein Science
, vol.16
, Issue.3
, pp. 528-534
-
-
Dong, X.1
Kato-Murayama, M.2
Muramatsu, T.3
Mori, H.4
Shirouzu, M.5
Bessho, Y.6
Yokoyama, S.7
-
21
-
-
77951567636
-
The bacterial N-end rule pathway: Expect the unexpected
-
Dougan DA, Truscott KN, Zeth K. 2010. The bacterial N-end rule pathway: expect the unexpected. Mol Microbiol 76: 545-558.
-
(2010)
Mol Microbiol
, vol.76
, pp. 545-558
-
-
Dougan, D.A.1
Truscott, K.N.2
Zeth, K.3
-
22
-
-
64749088445
-
Quantification of the post-translational addition of amino acids to proteins by MALDITOF mass spectrometry
-
Ebhardt HA, Xu Z, Fung AW, Fahlman RP. 2009. Quantification of the post-translational addition of amino acids to proteins by MALDITOF mass spectrometry. Anal Chem 81: 1937-1943.
-
(2009)
Anal Chem
, vol.81
, pp. 1937-1943
-
-
Ebhardt, H.A.1
Xu, Z.2
Fung, A.W.3
Fahlman, R.P.4
-
23
-
-
0038179369
-
Selective charging of tRNA isoacceptors explains patterns of codon usage
-
DOI 10.1126/science.1083811
-
Elf J, Nilsson D, Tenson T, Ehrenberg M. 2003. Selective charging of tRNA isoacceptors explains patterns of codon usage. Science 300: 1718-1722. (Pubitemid 36712562)
-
(2003)
Science
, vol.300
, Issue.5626
, pp. 1718-1722
-
-
Elf, J.1
Nilsson, D.2
Tenson, T.3
Ehrenberg, M.4
-
24
-
-
0025599976
-
Growth rate dependence of transfer RNA abundance in Escherichia coli
-
Emilsson V, Kurland CG. 1990. Growth rate dependence of transfer RNA abundance in Escherichia coli. EMBO J 9: 4359-4366. (Pubitemid 120025992)
-
(1990)
EMBO Journal
, vol.9
, Issue.13
, pp. 4359-4366
-
-
Emilsson, V.1
Kurland, C.G.2
-
25
-
-
2942592157
-
Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites
-
DOI 10.1021/bi0495836
-
Fahlman RP, Uhlenbeck OC. 2004. Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites. Biochemistry 43: 7575-7583. (Pubitemid 38745773)
-
(2004)
Biochemistry
, vol.43
, Issue.23
, pp. 7575-7583
-
-
Fahlman, R.P.1
Uhlenbeck, O.C.2
-
26
-
-
0015527719
-
Accumulation and turn-over of guanosine tetraphosphate in Escherichia coli
-
Fiil NP, von Meyenburg K, Friesen JD. 1972. Accumulation and turn-over of guanosine tetraphosphate in Escherichia coli. J Mol Biol 71: 769-783.
-
(1972)
J Mol Biol
, vol.71
, pp. 769-783
-
-
Fiil, N.P.1
Von Meyenburg, K.2
Friesen, J.D.3
-
27
-
-
63249135046
-
Wv transferase for bacterial cell wall synthesis
-
Wv transferase for bacterial cell wall synthesis. Nucleic Acids Res 37: 1589-1601.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1589-1601
-
-
Fonvielle, M.1
Chemama, M.2
Villet, R.3
Lecerf, M.4
Bouhss, A.5
Valery, J.M.6
Etheve-Quelquejeu, M.7
Arthur, M.8
-
28
-
-
84880170595
-
Ala to peptidoglycan precursors
-
Ala to peptidoglycan precursors. Angew Chem Int Ed Engl 52: 7278-7281.
-
(2013)
Angew Chem Int Ed Engl
, vol.52
, pp. 7278-7281
-
-
Fonvielle, M.1
Li De La Sierra-Gallay, I.2
El-Sagheer, A.H.3
Lecerf, M.4
Patin, D.5
Mellal, D.6
Mayer, C.7
Blanot, D.8
Gale, N.9
Brown, T.10
-
29
-
-
71549148346
-
tRNA as an active chemical scaffold for diverse chemical transformations
-
Francklyn CS, Minajigi A. 2010. tRNA as an active chemical scaffold for diverse chemical transformations. FEBS Lett 584: 366-375.
-
(2010)
FEBS Lett
, vol.584
, pp. 366-375
-
-
Francklyn, C.S.1
Minajigi, A.2
-
30
-
-
79957773104
-
An alternative mechanism for the catalysis of peptide bond formation by L/F transferase: Substrate binding and orientation
-
Fung AW, Ebhardt HA, Abeysundara H, Moore J, Xu Z, Fahlman RP. 2011. An alternative mechanism for the catalysis of peptide bond formation by L/F transferase: substrate binding and orientation. J Mol Biol 409: 617-629.
-
(2011)
J Mol Biol
, vol.409
, pp. 617-629
-
-
Fung, A.W.1
Ebhardt, H.A.2
Abeysundara, H.3
Moore, J.4
Xu, Z.5
Fahlman, R.P.6
-
31
-
-
84901922703
-
Probing the leucyl/phenylalanyl tRNA protein transferase active site with tRNA substrate analogues
-
Fung AW, Ebhardt HA, Krishnakumar KS, Moore J, Xu Z, Strazewski P, Fahlman RP. 2014. Probing the leucyl/phenylalanyl tRNA protein transferase active site with tRNA substrate analogues. Protein Pept Lett 21: 603-614.
-
(2014)
Protein Pept Lett
, vol.21
, pp. 603-614
-
-
Fung, A.W.1
Ebhardt, H.A.2
Krishnakumar, K.S.3
Moore, J.4
Xu, Z.5
Strazewski, P.6
Fahlman, R.P.7
-
33
-
-
0024474145
-
Universality and structure of the N-end rule
-
Gonda DK, Bachmair A, Wunning I, Tobias JW, Lane WS, Varshavsky A. 1989. Universality and structure of the N-end rule. J Biol Chem 264: 16700-16712.
-
(1989)
J Biol Chem
, vol.264
, pp. 16700-16712
-
-
Gonda, D.K.1
Bachmair, A.2
Wunning, I.3
Tobias, J.W.4
Lane, W.S.5
Varshavsky, A.6
-
34
-
-
77955268037
-
The plant N-end rule pathway: Structure and functions
-
Graciet E, Wellmer F. 2010. The plant N-end rule pathway: structure and functions. Trends Plant Sci 15: 447-453.
-
(2010)
Trends Plant Sci
, vol.15
, pp. 447-453
-
-
Graciet, E.1
Wellmer, F.2
-
35
-
-
0029893784
-
Analysis of cysteine residues in peptides and proteins alkylated with volatile reagents
-
DOI 10.1007/BF00807326
-
Hale JE, Butler JP, Pourmand RR. 1996. Analysis of cysteine residues in peptides and proteins alkylated with volatile reagents. Amino Acids 10: 243-252. (Pubitemid 26159932)
-
(1996)
Amino Acids
, vol.10
, Issue.3
, pp. 243-252
-
-
Hale, J.E.1
Butler, J.P.2
Pourmand, R.R.3
-
36
-
-
4444313548
-
A simplified procedure for the reduction and alkylation of cysteine residues in proteins prior to proteolytic digestion and mass spectral analysis
-
DOI 10.1016/j.ab.2004.04.013, PII S0003269704003318
-
Hale JE, Butler JP, Gelfanova V, You JS, Knierman MD. 2004. A simplified procedure for the reduction and alkylation of cysteine residues in proteins prior to proteolytic digestion and mass spectral analysis. Anal Biochem 333: 174-181. (Pubitemid 39209235)
-
(2004)
Analytical Biochemistry
, vol.333
, Issue.1
, pp. 174-181
-
-
Hale, J.E.1
Butler, J.P.2
Gelfanova, V.3
You, J.-S.4
Knierman, M.D.5
-
37
-
-
0017328671
-
Differential utilization of leucyl tRNAs by Escherichia coli
-
Holmes WM, Goldman E, Miner TA, Hatfield GW. 1977. Differential utilization of leucyl-tRNAs by Escherichia coli. Proc Natl Acad Sci 74: 1393-1397. (Pubitemid 8086902)
-
(1977)
Proceedings of the National Academy of Sciences of the United States of America
, vol.74
, Issue.4
, pp. 1393-1397
-
-
Holmes, W.M.1
Goldman, E.2
Miner, T.A.3
Hatfield, G.W.4
-
38
-
-
11144357971
-
Aminoacyl-tRNAs: Setting the limits of the genetic code
-
DOI 10.1101/gad.1187404
-
Ibba M, Soll D. 2004. Aminoacyl-tRNAs: setting the limits of the genetic code. Genes Dev 18: 731-738. (Pubitemid 38480885)
-
(2004)
Genes and Development
, vol.18
, Issue.7
, pp. 731-738
-
-
Ibba, M.1
Soll, D.2
-
39
-
-
33745993606
-
Arginylation of β-actin regulates actin cytoskeleton and cell motility
-
DOI 10.1126/science.1129344
-
Karakozova M, Kozak M, Wong CC, Bailey AO, Yates JR III, Mogilner A, Zebroski H, Kashina A. 2006. Arginylation of β-actin regulates actin cytoskeleton and cell motility. Science 313: 192-196. (Pubitemid 44066244)
-
(2006)
Science
, vol.313
, Issue.5784
, pp. 192-196
-
-
Karakozova, M.1
Kozak, M.2
Wong, C.C.L.3
Bailey, A.O.4
Yates III, J.R.5
Mogilner, A.6
Zebroski, H.7
Kashina, A.8
-
40
-
-
84879335491
-
Kinetic analysis of the leucyl/phenylalanyl-tRNA-protein transferase with acceptor peptides possessing different N-terminal penultimate residues
-
Kawaguchi J, Maejima K, Kuroiwa H, Taki M. 2013. Kinetic analysis of the leucyl/phenylalanyl-tRNA-protein transferase with acceptor peptides possessing different N-terminal penultimate residues. FEBS Open Bio 3: 252-255.
-
(2013)
FEBS Open Bio
, vol.3
, pp. 252-255
-
-
Kawaguchi, J.1
Maejima, K.2
Kuroiwa, H.3
Taki, M.4
-
41
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research
-
Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H, Mori H. 2005. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res 12: 291-299.
-
(2005)
DNA Res
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
-
42
-
-
0035812828
-
Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation
-
DOI 10.1126/science.1064242
-
LaRiviere FJ, Wolfson AD, Uhlenbeck OC. 2001. Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation. Science 294: 165-168. (Pubitemid 32952970)
-
(2001)
Science
, vol.294
, Issue.5540
, pp. 165-168
-
-
LaRiviere, F.J.1
Wolfson, A.D.2
Uhlenbeck, O.C.3
-
44
-
-
0014667057
-
A soluble enzyme from Escherichia coli which catalyzes the transfer of leucine and phenylalanine from tRNA to acceptor proteins
-
Leibowitz MJ, Soffer RL. 1969. A soluble enzyme from Escherichia coli which catalyzes the transfer of leucine and phenylalanine from tRNA to acceptor proteins. Biochem Biophys Res Commun 36: 47-53.
-
(1969)
Biochem Biophys Res Commun
, vol.36
, pp. 47-53
-
-
Leibowitz, M.J.1
Soffer, R.L.2
-
45
-
-
0015218619
-
Enzymatic modification of proteins. VII. Substrate specificity of leucyl, phenylalanyl-transfer ribonucleic acid-protein transferase
-
Leibowitz MJ, Soffer RL. 1971. Enzymatic modification of proteins. VII. Substrate specificity of leucyl, phenylalanyl-transfer ribonucleic acid-protein transferase. J Biol Chem 246: 5207-5212.
-
(1971)
J Biol Chem
, vol.246
, pp. 5207-5212
-
-
Leibowitz, M.J.1
Soffer, R.L.2
-
46
-
-
0022412615
-
Kinetic studies of Escherichia coli elongation factor Tu-guanosine 5'-triphosphate-aminoacyl-tRNA complexes
-
DOI 10.1021/bi00344a019
-
Louie A, Jurnak F. 1985. Kinetic studies of Escherichia coli elongation factor Tu-guanosine 5′-triphosphate-aminoacyl-tRNA complexes. Biochemistry 24: 6433-6439. (Pubitemid 16207114)
-
(1985)
Biochemistry
, vol.24
, Issue.23
, pp. 6433-6439
-
-
Louie, A.1
Jurnak, F.2
-
47
-
-
0021344828
-
Relative affinities of all Escherichia coli aminoacyl-tRNAs for elongation factor Tu-GTP
-
Louie A, Ribeiro NS, Reid BR, Jurnak F. 1984. Relative affinities of all Escherichia coli aminoacyl-tRNAs for elongation factor Tu-GTP. J Biol Chem 259: 5010-5016. (Pubitemid 14140600)
-
(1984)
Journal of Biological Chemistry
, vol.259
, Issue.8
, pp. 5010-5016
-
-
Louie, A.1
Ribeiro, N.S.2
Reid, B.R.3
Jurnak, F.4
-
48
-
-
18944398046
-
Structure-based site-directed mutagenesis of the UDP-MurNAc-pentapeptide- binding cavity of the FemX alanyl transferase from Weissella viridescens
-
DOI 10.1128/JB.187.11.3833-3838.2005
-
Maillard AP, Biarrotte-Sorin S, Villet R, Mesnage S, Bouhss A, Sougakoff W, Mayer C, Arthur M. 2005. Structure-based site-directed mutagenesis of the UDP-MurNAc-pentapeptide-binding cavity of the FemX alanyl transferase from Weissella viridescens. J Bacteriol 187: 3833-3838. (Pubitemid 40705588)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.11
, pp. 3833-3838
-
-
Maillard, A.P.1
Biarrotte-Sorin, S.2
Villet, R.3
Mesnage, S.4
Bouhss, A.5
Sougakoff, W.6
Mayer, C.7
Arthur, M.8
-
50
-
-
33947713897
-
The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies
-
DOI 10.1016/j.tcb.2007.02.001, PII S0962892407000281
-
Mogk A, Schmidt R, Bukau B. 2007. The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies. Trends Cell Biol 17: 165-172. (Pubitemid 46507804)
-
(2007)
Trends in Cell Biology
, vol.17
, Issue.4
, pp. 165-172
-
-
Mogk, A.1
Schmidt, R.2
Bukau, B.3
-
51
-
-
67649552963
-
Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli
-
Ninnis RL, Spall SK, Talbo GH, Truscott KN, Dougan DA. 2009. Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli. EMBO J 28: 1732-1744.
-
(2009)
EMBO J
, vol.28
, pp. 1732-1744
-
-
Ninnis, R.L.1
Spall, S.K.2
Talbo, G.H.3
Truscott, K.N.4
Dougan, D.A.5
-
52
-
-
59649084249
-
How nature morphs peptide scaffolds into antibiotics
-
Nolan EM, Walsh CT. 2009. How nature morphs peptide scaffolds into antibiotics. Chembiochem 10: 34-53.
-
(2009)
Chembiochem
, vol.10
, pp. 34-53
-
-
Nolan, E.M.1
Walsh, C.T.2
-
53
-
-
0025105909
-
Ternary complexes of Escherichia coli aminoacyl-tRNAs with the elongation factor Tu and GTP: Thermodynamic and structural studies
-
DOI 10.1016/0167-4781(90)90170-7
-
Ott G, Schiesswohl M, Kiesewetter S, Forster C, Arnold L, Erdmann VA, Sprinzl M. 1990. Ternary complexes of Escherichia coli aminoacyl-tRNAs with the elongation factor Tu and GTP: Thermodynamic and structural studies. Biochim Biophys Acta 1050: 222-225. (Pubitemid 20285341)
-
(1990)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1050
, Issue.1-3
, pp. 222-225
-
-
Ott, G.1
Schiesswohl, M.2
Kiesewetter, S.3
Forster, C.4
Arnold, L.5
Erdmann, V.A.6
Sprinzl, M.7
-
54
-
-
0019577870
-
The elongation factor Tu • guanosine tetraphosphate complex
-
Pingoud A, Block W. 1981. The elongation factor Tu • guanosine tetraphosphate complex. Eur J Biochem 116: 631-634.
-
(1981)
Eur J Biochem
, vol.116
, pp. 631-634
-
-
Pingoud, A.1
Block, W.2
-
55
-
-
0032493356
-
PRT1 of Arabidopsis thaliana encodes a component of the plant N-end rule pathway
-
DOI 10.1073/pnas.95.14.7904
-
Potuschak T, Stary S, Schlogelhofer P, Becker F, Nejinskaia V, Bachmair A. 1998. PRT1 of Arabidopsis thaliana encodes a component of the plant N-end rule pathway. Proc Natl Acad Sci 95: 7904-7908. (Pubitemid 28326039)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.14
, pp. 7904-7908
-
-
Potuschak, T.1
Stary, S.2
Schlogelhofer, P.3
Becker, F.4
Nejinskaia, V.5
Bachmair, A.6
-
56
-
-
33747754168
-
Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases
-
DOI 10.1038/sj.embor.7400747, PII 7400747
-
Rai R, Mushegian A, Makarova K, Kashina A. 2006. Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases. EMBO Rep 7: 800-805. (Pubitemid 44275398)
-
(2006)
EMBO Reports
, vol.7
, Issue.8
, pp. 800-805
-
-
Rai, R.1
Mushegian, A.2
Makarova, K.3
Kashina, A.4
-
57
-
-
0016244393
-
Utilization of isoaccepting leucyl-tRNA in the soluble incorporation system and protein synthesizing systems from E.Coli
-
Rao PM, Kaji H. 1974. Utilization of isoaccepting leucyl-tRNA in the soluble incorporation system and protein synthesizing systems from E.coli. FEBS Lett 43: 199-202.
-
(1974)
FEBS Lett
, vol.43
, pp. 199-202
-
-
Rao, P.M.1
Kaji, H.2
-
58
-
-
0021231777
-
ppGpp inhibition of elongation factors Tu, G and Ts during polypeptide synthesis
-
DOI 10.1007/BF00327920
-
Rojas AM, Ehrenberg M, Andersson SG, Kurland CG. 1984. ppGpp inhibition of elongation factors Tu, G and Ts during polypeptide synthesis. Mol Gen Genet 197: 36-45. (Pubitemid 14010902)
-
(1984)
Molecular and General Genetics
, vol.197
, Issue.1
, pp. 36-45
-
-
Rojas, A.-M.1
Ehrenberg, M.2
Andersson, S.G.E.3
Kurland, C.G.4
-
60
-
-
81155162510
-
Posttranslational arginylation as a global biological regulator
-
Saha S, Kashina A. 2011. Posttranslational arginylation as a global biological regulator. Dev Biol 358: 1-8.
-
(2011)
Dev Biol
, vol.358
, pp. 1-8
-
-
Saha, S.1
Kashina, A.2
-
61
-
-
34248993209
-
The 51-63 base pair of tRNA confers specificity for binding by EF-Tu
-
DOI 10.1261/rna.485307
-
Sanderson LE, Uhlenbeck OC. 2007a. The 51-63 base pair of tRNA confers specificity for binding by EF-Tu. RNA 13: 835-840. (Pubitemid 46799817)
-
(2007)
RNA
, vol.13
, Issue.6
, pp. 835-840
-
-
Sanderson, L.E.1
Uhlenbeck, O.C.2
-
62
-
-
33947324018
-
Phe
-
DOI 10.1016/j.jmb.2007.01.075, PII S0022283607001404
-
Sanderson LE, Uhlenbeck OC. 2007b. Directed mutagenesis identifies amino acid residues involved in elongation factor Tu binding to yeast Phe-tRNAPhe. J Mol Biol 368: 119-130. (Pubitemid 46441218)
-
(2007)
Journal of Molecular Biology
, vol.368
, Issue.1
, pp. 119-130
-
-
Sanderson, L.E.1
Uhlenbeck, O.C.2
-
63
-
-
0017074380
-
Transfer of methionyl residues by leucyl, phenylalanyl-tRNA-protein transferase
-
Scarpulla RC, Deutch CE, Soffer RL. 1976. Transfer of methionyl residues by leucyl, phenylalanyl-tRNA-protein transferase. Biochem Biophys Res Commun 71: 584-589.
-
(1976)
Biochem Biophys Res Commun
, vol.71
, pp. 584-589
-
-
Scarpulla, R.C.1
Deutch, C.E.2
Soffer, R.L.3
-
64
-
-
70350654363
-
What recent ribosome structures have revealed about the mechanism of translation
-
Schmeing TM, Ramakrishnan V. 2009. What recent ribosome structures have revealed about the mechanism of translation. Nature 461: 1234-1242.
-
(2009)
Nature
, vol.461
, pp. 1234-1242
-
-
Schmeing, T.M.1
Ramakrishnan, V.2
-
65
-
-
83755224662
-
Is the sequence-specific binding of aminoacyl-tRNAs by EF-Tu universal among bacteria?
-
Schrader JM, Uhlenbeck OC. 2011. Is the sequence-specific binding of aminoacyl-tRNAs by EF-Tu universal among bacteria? Nucleic Acids Res 39: 9746-9758.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 9746-9758
-
-
Schrader, J.M.1
Uhlenbeck, O.C.2
-
66
-
-
60849128493
-
Understanding the sequence specificity of tRNA binding to elongation factor Tu using tRNA mutagenesis
-
Schrader JM, Chapman SJ, Uhlenbeck OC. 2009. Understanding the sequence specificity of tRNA binding to elongation factor Tu using tRNA mutagenesis. J Mol Biol 386: 1255-1264.
-
(2009)
J Mol Biol
, vol.386
, pp. 1255-1264
-
-
Schrader, J.M.1
Chapman, S.J.2
Uhlenbeck, O.C.3
-
67
-
-
79955113244
-
Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding
-
Schrader JM, Chapman SJ, Uhlenbeck OC. 2011. Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding. Proc Natl Acad Sci 108: 5215-5220.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 5215-5220
-
-
Schrader, J.M.1
Chapman, S.J.2
Uhlenbeck, O.C.3
-
68
-
-
67349099562
-
Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS
-
Schuenemann VJ, Kralik SM, Albrecht R, Spall SK, Truscott KN, Dougan DA, Zeth K. 2009. Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS. EMBO Rep 10: 508-514.
-
(2009)
EMBO Rep
, vol.10
, pp. 508-514
-
-
Schuenemann, V.J.1
Kralik, S.M.2
Albrecht, R.3
Spall, S.K.4
Truscott, K.N.5
Dougan, D.A.6
Zeth, K.7
-
69
-
-
41849117355
-
From one amino acid to another: tRNA-dependent amino acid biosynthesis
-
DOI 10.1093/nar/gkn015
-
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D. 2008. From one amino acid to another: tRNA-dependent amino acid biosynthesis. Nucleic Acids Res 36: 1813-1825. (Pubitemid 351494228)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.6
, pp. 1813-1825
-
-
Sheppard, K.1
Yuan, J.2
Hohn, M.J.3
Jester, B.4
Devine, K.M.5
Soll, D.6
-
70
-
-
0033862354
-
The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: A classic structure revisited
-
DOI 10.1017/S1355838200000364
-
Shi H, Moore PB. 2000. The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: a classic structure revisited. RNA 6: 1091-1105. (Pubitemid 30620393)
-
(2000)
RNA
, vol.6
, Issue.8
, pp. 1091-1105
-
-
Shi, H.1
Moore, P.B.2
-
71
-
-
0027255191
-
The N-end rule in Escherichia coli: Cloning and analysis of the leucyl, phenylalanyl-tRNA-protein transferase gene aat
-
Shrader TE, Tobias JW, Varshavsky A. 1993. The N-end rule in Escherichia coli: cloning and analysis of the leucyl, phenylalanyl-tRNA-protein transferase gene aat. J Bacteriol 175: 4364-4374. (Pubitemid 23206937)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.14
, pp. 4364-4374
-
-
Shrader, T.E.1
Tobias, J.W.2
Varshavsky, A.3
-
74
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
DOI 10.1093/nar/26.1.148
-
Sprinzl M, Horn C, Brown M, Ioudovitch A, Steinberg S. 1998. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 26: 148-153. (Pubitemid 28295271)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.1
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Loudovltch, A.4
Steinberg, S.5
-
75
-
-
0027976415
-
Discrimination against misacylated tRNA by chloroplast elongation factor Tu
-
Stanzel M, Schon A, Sprinzl M. 1994. Discrimination against misacylated tRNA by chloroplast elongation factor Tu. Eur J Biochem 219: 435-439. (Pubitemid 24053659)
-
(1994)
European Journal of Biochemistry
, vol.219
, Issue.1-2
, pp. 435-439
-
-
Stanzel, M.1
Schon, A.2
Sprinzl, M.3
-
76
-
-
0038381426
-
Common location of determinants in initiator transfer RNAs for initiator-elongator discrimination in bacteria and in eukaryotes
-
DOI 10.1074/jbc.M212890200
-
Stortchevoi A, Varshney U, RajBhandary UL. 2003. Common location of determinants in initiator transfer RNAs for initiator-elongator discrimination in bacteria and in eukaryotes. J Biol Chem 278: 17672-17679. (Pubitemid 36799369)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.20
, pp. 17672-17679
-
-
Stortchevoi, A.1
Varshney, U.2
RajBhandary, U.L.3
-
77
-
-
33845706511
-
Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
-
DOI 10.1038/sj.emboj.7601433, PII 7601433
-
Suto K, Shimizu Y, Watanabe K, Ueda T, Fukai S, Nureki O, Tomita K. 2006. Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog. EMBO J 25: 5942-5950. (Pubitemid 44967775)
-
(2006)
EMBO Journal
, vol.25
, Issue.24
, pp. 5942-5950
-
-
Suto, K.1
Shimizu, Y.2
Watanabe, K.3
Ueda, T.4
Fukai, S.5
Nureki, O.6
Tomita, K.7
-
78
-
-
0026316101
-
The N-end rule in bacteria
-
Tobias JW, Shrader TE, Rocap G, Varshavsky A. 1991. The N-end rule in bacteria. Science 254: 1374-1377. (Pubitemid 21917472)
-
(1991)
Science
, vol.254
, Issue.5036
, pp. 1374-1377
-
-
Tobias, J.W.1
Shrader, T.E.2
Rocap, G.3
Varshavsky, A.4
-
79
-
-
36749012916
-
Idiosyncratic features in tRNAs participating in bacterial cell wall synthesis
-
DOI 10.1093/nar/gkm778
-
Villet R, Fonvielle M, Busca P, Chemama M, Maillard AP, Hugonnet JE, Dubost L, Marie A, Josseaume N, Mesnage S, et al. 2007. Idiosyncratic features in tRNAs participating in bacterial cell wall synthesis. Nucleic Acids Res 35: 6870-6883. (Pubitemid 350201807)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.20
, pp. 6870-6883
-
-
Villet, R.1
Fonvielle, M.2
Busca, P.3
Chemama, M.4
Maillard, A.P.5
Hugonnet, J.-E.6
Dubost, L.7
Marie, A.8
Josseaume, N.9
Mesnage, S.10
Mayer, C.11
Valery, J.-M.12
Etheve-Quelquejeu, M.13
Arthur, M.14
-
80
-
-
80053069963
-
N-terminal protein modification using simple aminoacyl transferase substrates
-
Wagner AM, Fegley MW, Warner JB, Grindley CL, Marotta NP, Petersson EJ. 2011. N-terminal protein modification using simple aminoacyl transferase substrates. J Am Chem Soc 133: 15139-15147.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 15139-15147
-
-
Wagner, A.M.1
Fegley, M.W.2
Warner, J.B.3
Grindley, C.L.4
Marotta, N.P.5
Petersson, E.J.6
-
81
-
-
54049111071
-
Tuning the strength of a bacterial N-end rule degradation signal
-
Wang KH, Oakes ES, Sauer RT, Baker TA. 2008a. Tuning the strength of a bacterial N-end rule degradation signal. J Biol Chem 283: 24600-24607.
-
(2008)
J Biol Chem
, vol.283
, pp. 24600-24607
-
-
Wang, K.H.1
Oakes, E.S.2
Sauer, R.T.3
Baker, T.A.4
-
82
-
-
55049110221
-
The molecular basis of N-end rule recognition
-
Wang KH, Roman-Hernandez G, Grant RA, Sauer RT, Baker TA. 2008b. The molecular basis of N-end rule recognition. Mol Cell 32: 406-414.
-
(2008)
Mol Cell
, vol.32
, pp. 406-414
-
-
Wang, K.H.1
Roman-Hernandez, G.2
Grant, R.A.3
Sauer, R.T.4
Baker, T.A.5
-
83
-
-
35348938968
-
Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
-
DOI 10.1038/nature06167, PII NATURE06167
-
Watanabe K, Toh Y, Suto K, Shimizu Y, Oka N, Wada T, Tomita K. 2007. Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase. Nature 449: 867-871. (Pubitemid 47598606)
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 867-871
-
-
Watanabe, K.1
Toh, Y.2
Suto, K.3
Shimizu, Y.4
Oka, N.5
Wada, T.6
Tomita, K.7
-
84
-
-
0036809217
-
Dissection of the mechanism for the stringent factor RelA
-
DOI 10.1016/S1097-2765(02)00656-1
-
Wendrich TM, Blaha G, Wilson DN, Marahiel MA, Nierhaus KH. 2002. Dissection of the mechanism for the stringent factor RelA. Mol Cell 10: 779-788. (Pubitemid 35335633)
-
(2002)
Molecular Cell
, vol.10
, Issue.4
, pp. 779-788
-
-
Wendrich, T.M.1
Blaha, G.2
Wilson, D.N.3
Marahiel, M.A.4
Nierhaus, K.H.5
-
86
-
-
67649336912
-
Magic spot: (p) ppGpp
-
Wu J, Xie J. 2009. Magic spot: (p) ppGpp. J Cell Physiol 220: 297-302.
-
(2009)
J Cell Physiol
, vol.220
, pp. 297-302
-
-
Wu, J.1
Xie, J.2
-
87
-
-
69949167078
-
Genome-wide analysis of tRNA charging and activation of the eIF2 kinase Gcn2p
-
Zaborske JM, Narasimhan J, Jiang L, Wek SA, Dittmar KA, Freimoser F, Pan T, Wek RC. 2009. Genome-wide analysis of tRNA charging and activation of the eIF2 kinase Gcn2p. J Biol Chem 284: 25254-25267.
-
(2009)
J Biol Chem
, vol.284
, pp. 25254-25267
-
-
Zaborske, J.M.1
Narasimhan, J.2
Jiang, L.3
Wek, S.A.4
Dittmar, K.A.5
Freimoser, F.6
Pan, T.7
Wek, R.C.8
-
88
-
-
77956663124
-
Differential arginylation of actin isoforms is regulated by coding sequence-dependent degradation
-
Zhang F, Saha S, Shabalina SA, Kashina A. 2010. Differential arginylation of actin isoforms is regulated by coding sequence-dependent degradation. Science 329: 1534-1537.
-
(2010)
Science
, vol.329
, pp. 1534-1537
-
-
Zhang, F.1
Saha, S.2
Shabalina, S.A.3
Kashina, A.4
|