Common location of determinants in initiator transfer RNAs for initiator-elongator discrimination in bacteria and in eukaryotes

Journal of Biological Chemistry

Volumn 278, Issue 20, 2003, Pages 17672-17679

  Stortchevoi, Alexei ^c   Varshney, Umesh ^a   RajBhandary, Uttam L ^b  

^a INDIAN INSTITUTE OF SCIENCE   (India)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c NONE

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; BIOCHEMISTRY; ESCHERICHIA COLI;

MUTATION;

RNA;

AMINOACYL TRANSFER RNA; ELONGATION FACTOR TU; GLUTAMINE; GUANOSINE TRIPHOSPHATE; METHIONINE; TRANSFER RNA; ADENOSINE TRIPHOSPHATE; BETA LACTAMASE; GREEN FLUORESCENT PROTEIN; PHOTOPROTEIN;

ANTICODON; ARTICLE; BACTERIAL MUTATION; BASE MISPAIRING; BINDING AFFINITY; BINDING ASSAY; ESCHERICHIA COLI; EUKARYOTE; NONHUMAN; PRIORITY JOURNAL; PROTEIN SYNTHESIS; RNA TRANSLATION; CHEMISTRY; CONFORMATION; DOSE RESPONSE; IMMUNOBLOTTING; KINETICS; METABOLISM; MUTATION; NORTHERN BLOTTING; PLASMID; PROTEIN BINDING; TIME;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; EUKARYOTA;

ADENOSINE TRIPHOSPHATE; BETA-LACTAMASES; BLOTTING, NORTHERN; DOSE-RESPONSE RELATIONSHIP, DRUG; ESCHERICHIA COLI; GREEN FLUORESCENT PROTEINS; GUANOSINE TRIPHOSPHATE; IMMUNOBLOTTING; KINETICS; LUMINESCENT PROTEINS; METHIONINE; MUTATION; NUCLEIC ACID CONFORMATION; PEPTIDE ELONGATION FACTOR TU; PLASMIDS; PROTEIN BINDING; RNA, TRANSFER; TIME FACTORS;

EID: 0038381426     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M212890200     Document Type: Article

References (59)

1. Clark, B. F., and Marcker, K. A. (1966) J. Mol. Biol. 17, 394-406
2. Kozak, M. (1983) Microbiol. Rev. 47, 1-45
3. RajBhandary, U. L., and Chow, C. M. (1995) in tRNA: Structure, Biosynthesis, and Function (Söll, D., and RajBhandary, U. L., eds) pp. 511-528, American Society for Microbiology, Washington, D. C.
4. RajBhandary, U. L. (1994) J. Bacteriol. 176, 547-552
5. Marcker, K. A., and Sanger, F. (1964) J. Mol. Biol. 8, 835-840
6. Dickerman, H. W., Steers, E., Redfield, B. G., and Weissbach, H. (1967) J. Biol. Chem. 242, 1522-1525
7. Canonaco, M. A., Calogero, R. A., and Gualerzi, C. O. (1986) FEBS Lett. 207, 198-204
8. Sundari, R. M., Stringer, E. A., Schulman, L. H., and Maitra, U. (1976) J. Biol. Chem. 251, 3338-3345
9. Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F., and Nyborg, J. (1995) Science 270, 1464-1472
10. Seong, B. L., and RajBhandary, U. L. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 8859-8863
11. Seong, B. L., Lee, C. P., and RajBhandary, U. L. (1989) J. Biol. Chem. 264, 6504-6508
12. Seong, B. L., and RajBhandary, U. L. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 334-338
13. Förster, C., Chakraburtty, K., and Sprinzl, M. (1993) Nucleic Acids Res. 21, 5679-5683
14. Dreher, T. W., Uhlenbeck, O. C., and Browning, K. S. (1999) J. Biol. Chem. 274, 666-672
15. Åström, S. U., and Byström, A. S. (1994) Cell 79, 535-546
16. Åström, S. U., von Pawel-Rammingen, U., and Byström, A. S. (1993) J. Mol. Biol. 233, 43-58
17. Drabkin, H. J., Estrella, M., and RajBhandary, U. L. (1998) Mol. Cell. Biol. 18, 1459-1466
18. Desgres, J., Keith, G., Kuo, K. C., and Gehrke, C. W. (1989) Nucleic Acids Res. 17, 865-882
19. Simsek, M., and RajBhandary, U. L. (1972) Biochem. Biophys. Res. Commun. 49, 508-515
20. Ghosh, H. P., Ghosh, K., Simsek, M., and RajBhandary, U. L. (1982) Nueleic Acids Res. 10, 3241-3247
21. Simsek, M., RajBhandary, U. L., Boisnard, M., and Petrissant, G. (1974) Nature 247, 518-520
22. Piper, P. W., and Clark, B. F. (1974) Nature 247, 516-518
23. Forchhammer, K., Leinfelder, W., and Böck, A. (1989) Nature 342, 453-456
24. Rudinger, J., Hillenbrandt, R., Sprinzl, M., and Giegé, R. (1996) EMBO J. 15, 650-657
25. Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. (1998) Nucleic Acids Res. 26, 148-153
26. Varshney, U., Lee, C. P., and RajBhandary, U. L. (1991) J. Biol. Chem. 266, 24712-24718
27. Zhang, Y., Li, X., and Spremulli, L. L. (1996) FEBS Lett. 391, 330-332
28. Ramesh, V., Gite, S., and RajBhandary, U. L. (1998) Biochemistry 37, 15925-15932
29. Miller, J. H. (1992) A Short Course in Bacterial Genetics, A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria, pp. 72-74, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
30. Varshney, U., Lee, C. P., Seong, B. L., and RajBhandary, U. L. (1991) J. Biol. Chem. 266, 18018-18024
31. LaRiviere, F. J., Wolfson, A. D., and Uhlenbeck, O. C. (2001) Science 294, 165-168
32. Schulman, L. H., and Pelka, H. (1985) Biochemistry 24, 7309-7314
33. Varshney, U., and RajBhandary, U. L. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 1586-1590
34. Perona, J. J., Swanson, R. N., Rould, M. A., Steitz, T. A., and Söll, D. (1989) Science 246, 1152-1154
35. Lee, C. P., Seong, B. L., and RajBhandary, U. L. (1991) J. Biol. Chem. 266, 18012-18017
36. Schmitt, E., Panvert, M., Blanquet, S., and Mechulam, Y. (1998) EMBO J. 17, 6819-6826
37. Ramesh, V., Gite, S., Li, Y., and RajBhandary, U. L. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 13524-13529
38. Lee, C. P., Dyson, M. R., Mandal, N., Varshney, U., Bahramian, B., and RajBhandary, U. L. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 9262-9266
39. Louie, A., Ribeiro, N. S., Reid, B. R., and Jurnak, F. (1984) J. Biol. Chem. 259, 5010-5016
40. Pleiss, J. A., and Uhlenbeck, O. C. (2001) J. Mol. Biol. 308, 895-905
41. Basavappa, R., and Sigler, P. B. (1991) EMBO J. 10, 3105-3111
42. Kiesewetter, S., Ott, G., and Sprinzl, M. (1990) Nucleic Acids Res. 18, 4677-4682
43. Knowlton, R. G., and Yarus, M. (1980) J. Mol. Biol. 139, 721-732
44. Soll, L., and Berg, P. (1969) Nature 223, 1340-1342
45. Celis, J. E., Coulondre, C., and Miller, J. H. (1976) J. Mol. Biol. 104, 729-734
46. Asahara, H., and Uhlenbeck, O. C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 3499-3504
47. Varshney, U., Lee, C. P., and RajBhandary, U. L. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 2305-2309
48. Wu, X. Q., Iyengar, P., and RajBhandary, U. L. (1996) EMBO J. 15, 4734-4739
49. Giege, R., Ebel, J. P., and Clark, B. F. (1973) FEBS Lett. 30, 291-295
50. Takeuchi, N., Vial, L., Panvert, M., Schmitt, E., Watanabe, K., Mechulam, Y., and Blanquet, S. (2001) J. Biol. Chem. 276, 20064-20068
51. Wu, X. Q., and RajBhandary, U. L. (1997) J. Biol. Chem. 272, 1891-1895
52. Wagner, T., Gross, M., and Sigler, P. B. (1984) J. Biol. Chem. 259, 4706-4709
53. Drabkin, H. J., and RajBhandary, U. L. (1998) Mol. Cell. Biol. 18, 5140-5147
54. Thanedar, S., Kumar, N. V., and Varshney, U. (2000) J., Biol. Chem. 275, 20361-20367
55. Guillon, J. M., Mechulam, Y., Blanquet, S., and Fayat, G. (1993) J. Bacteriol. 175, 4507-4514
56. Li, S., Kumar, N. V., Varshney, U., and RajBhandary, U. L. (1996) J. Biol. Chem. 271, 1022-1028
57. Meinnel, T., and Blanquet, S. (1993) J. Bacteriol. 175, 7737-7740
58. Hershey, J. W. B. (1987) in Escherichia coli and Salmonella typhimurium (Niehardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M., and Umbarger, H. E., eds) Vol. 1, pp. 613-647, American Society for Microbiology, Washington, D. C.
59. Kössel, H., and RajBhandary, U. L. (1968) J. Mol. Biol. 35, 539-560