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Volumn 13, Issue 14, 2014, Pages 2296-2305

Structure-based discovery of the first allosteric inhibitors of cyclin-dependent kinase 2

Author keywords

Allosteric inhibitors; BEAR; Cyclin dependent kinase 2; Protein kinase; Structure based drug design; Virtual screening

Indexed keywords

BAS 00111586; BAS 00380830; BAS 00381203; BAS 00434932; BAS 00590245; BAS 00619651; BAS 00631909; BAS 00916022; BAS 01060577; BAS 01060589; BAS 01123443; BAS 01404025; BAS 01547732; BAS 02102245; BAS 02102259; BAS 02102292; CYCLIN DEPENDENT KINASE 2 INHIBITOR; STAUROSPORINE; UNCLASSIFIED DRUG; ANTINEOPLASTIC AGENT; CDK2 PROTEIN, HUMAN; CYCLIN DEPENDENT KINASE 2; LIGAND; PROTEIN BINDING; PROTEIN KINASE INHIBITOR; RETINOBLASTOMA PROTEIN;

EID: 84904488820     PISSN: 15384101     EISSN: 15514005     Source Type: Journal    
DOI: 10.4161/cc.29295     Document Type: Article
Times cited : (42)

References (41)
  • 1
    • 57749188299 scopus 로고    scopus 로고
    • Targeting cancer with small molecule kinase inhibitors
    • PMID:19104514
    • Zhang J, Yang PL, Gray NS. Targeting cancer with small molecule kinase inhibitors. Nat Rev Cancer 2009; 9:28-39; PMID:19104514; http://dx.doi.org/10. 1038/nrc2559
    • (2009) Nat Rev Cancer , vol.9 , pp. 28-39
    • Zhang, J.1    Yang, P.L.2    Gray, N.S.3
  • 2
    • 79953658137 scopus 로고    scopus 로고
    • Drug discovery and the human kinome: Recent trends
    • PMID:21256157
    • Eglen R, Reisine T. Drug discovery and the human kinome: recent trends. Pharmacol Ther 2011; 130:144-56; PMID:21256157; http://dx.doi.org/10.1016/j. pharmthera.2011.01.007
    • (2011) Pharmacol Ther , vol.130 , pp. 144-156
    • Eglen, R.1    Reisine, T.2
  • 3
    • 84875747743 scopus 로고    scopus 로고
    • αC Helix Displacement as a General Approach for Protein Kinases Allosteric Modulation
    • PMID:23195331
    • Palmieri L, Rastelli G. αC Helix Displacement as a General Approach for Protein Kinases Allosteric Modulation. Drug Discov Today 2013; 18:407-14; PMID:23195331; http://dx.doi.org/10.1016/j.drudis.2012.11.009
    • (2013) Drug Discov Today , vol.18 , pp. 407-414
    • Palmieri, L.1    Rastelli, G.2
  • 5
    • 84861722034 scopus 로고    scopus 로고
    • New directions in targeting protein kinases: Focusing upon true allosteric and bivalent inhibitors
    • PMID:22571662
    • Lamba V, Ghosh I. New directions in targeting protein kinases: focusing upon true allosteric and bivalent inhibitors. Curr Pharm Des 2012; 18:2936-45; PMID:22571662; http://dx.doi.org/10.2174/138161212800672813
    • (2012) Curr Pharm des , vol.18 , pp. 2936-2945
    • Lamba, V.1    Ghosh, I.2
  • 6
    • 84872511666 scopus 로고    scopus 로고
    • Strategies for the selective regulation of kinases with allosteric modulators: Exploiting exclusive structural features
    • PMID:23249378
    • Fang Z, Grütter C, Rauh D. Strategies for the selective regulation of kinases with allosteric modulators: exploiting exclusive structural features. ACS Chem Biol 2013; 8:58-70; PMID:23249378; http://dx.doi.org/10.1021/cb300663j
    • (2013) ACS Chem Biol , vol.8 , pp. 58-70
    • Fang, Z.1    Grütter, C.2    Rauh, D.3
  • 7
    • 67650073265 scopus 로고    scopus 로고
    • Cell cycle kinases as therapeutic targets for cancer
    • PMID:19568282
    • Lapenna S, Giordano A. Cell cycle kinases as therapeutic targets for cancer. Nat Rev Drug Discov 2009; 8:547-66; PMID:19568282; http://dx.doi.org/10. 1038/nrd2907
    • (2009) Nat Rev Drug Discov , vol.8 , pp. 547-566
    • Lapenna, S.1    Giordano, A.2
  • 8
    • 85011936850 scopus 로고    scopus 로고
    • CDK Inhibitor Triples PFS in Breast Cancer
    • CDK Inhibitor Triples PFS in Breast Cancer. Cancer Discov 2013; 3:4
    • (2013) Cancer Discov , vol.3 , pp. 4
  • 9
    • 0029665852 scopus 로고    scopus 로고
    • Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex
    • PMID:8684460
    • Russo AA, Jeffrey PD, Patten AK, Massagué J, Pavletich NP. Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex. Nature 1996; 382:325-31; PMID:8684460; http://dx.doi.org/10. 1038/382325a0
    • (1996) Nature , vol.382 , pp. 325-331
    • Russo, A.A.1    Jeffrey, P.D.2    Patten, A.K.3    Massagué, J.4    Pavletich, N.P.5
  • 10
    • 0037238799 scopus 로고    scopus 로고
    • Peptidomimetic design of CDK inhibitors targeting the recruitment site of the cyclin subunit
    • PMID:12678915
    • McInnes C, Andrews MJ, Zheleva DI, Lane DP, Fischer PM. Peptidomimetic design of CDK inhibitors targeting the recruitment site of the cyclin subunit. Curr Med Chem Anticancer Agents 2003; 3:57-69; PMID:12678915; http://dx.doi.org/10.2174/1568011033353506
    • (2003) Curr Med Chem Anticancer Agents , vol.3 , pp. 57-69
    • McInnes, C.1    Andrews, M.J.2    Zheleva, D.I.3    Lane, D.P.4    Fischer, P.M.5
  • 11
    • 6344240541 scopus 로고    scopus 로고
    • Design, synthesis, biological activity and structural analysis of cyclic peptide inhibitors targeting the substrate recruitment site of cyclin-dependent kinase complexes
    • PMID:15455144
    • Andrews MJ, McInnes C, Kontopidis G, Innes L, Cowan A, Plater A, Fischer PM. Design, synthesis, biological activity and structural analysis of cyclic peptide inhibitors targeting the substrate recruitment site of cyclin-dependent kinase complexes. Org Biomol Chem 2004; 2:2735-41; PMID:15455144; http://dx.doi.org/10.1039/b409157d
    • (2004) Org Biomol Chem , vol.2 , pp. 2735-2741
    • Andrews, M.J.1    McInnes, C.2    Kontopidis, G.3    Innes, L.4    Cowan, A.5    Plater, A.6    Fischer, P.M.7
  • 12
    • 70350357186 scopus 로고    scopus 로고
    • A novel class of cyclin-dependent kinase inhibitors identified by molecular docking act through a unique mechanism
    • PMID:19710018
    • Corsino P, Horenstein N, Ostrov D, Rowe T, Law M, Barrett A, Aslanidi G, Cress WD, Law B. A novel class of cyclin-dependent kinase inhibitors identified by molecular docking act through a unique mechanism. J Biol Chem 2009; 284:29945-55; PMID:19710018; http://dx.doi.org/10.1074/jbc.M109.055251
    • (2009) J Biol Chem , vol.284 , pp. 29945-29955
    • Corsino, P.1    Horenstein, N.2    Ostrov, D.3    Rowe, T.4    Law, M.5    Barrett, A.6    Aslanidi, G.7    Cress, W.D.8    Law, B.9
  • 13
    • 0037075887 scopus 로고    scopus 로고
    • Cyclin D-dependent kinases, INK4 inhibitors and cancer
    • PMID:11960696
    • Ortega S, Malumbres M, Barbacid M. Cyclin D-dependent kinases, INK4 inhibitors and cancer. Biochim Biophys Acta 2002; 1602:73-87; PMID:11960696
    • (2002) Biochim Biophys Acta , vol.1602 , pp. 73-87
    • Ortega, S.1    Malumbres, M.2    Barbacid, M.3
  • 14
    • 75349112388 scopus 로고    scopus 로고
    • Recent developments in cyclin-dependent kinase biochemical and structural studies
    • PMID:19822225
    • Echalier A, Endicott JA, Noble ME. Recent developments in cyclin-dependent kinase biochemical and structural studies. Biochim Biophys Acta 2010; 1804:511-9; PMID:19822225; http://dx.doi.org/10.1016/j.bbapap.2009.10.002
    • (2010) Biochim Biophys Acta , vol.1804 , pp. 511-519
    • Echalier, A.1    Endicott, J.A.2    Noble, M.E.3
  • 16
    • 84866449140 scopus 로고    scopus 로고
    • A novel approach to the discovery of small-molecule ligands of CDK2
    • PMID:22893598
    • Martin MP, Alam R, Betzi S, Ingles DJ, Zhu J-Y, Schönbrunn E. A novel approach to the discovery of small-molecule ligands of CDK2. Chembiochem 2012; 13:2128-36; PMID:22893598; http://dx.doi.org/10.1002/cbic.201200316
    • (2012) Chembiochem , vol.13 , pp. 2128-2136
    • Martin, M.P.1    Alam, R.2    Betzi, S.3    Ingles, D.J.4    Zhu, J.-Y.5    Schönbrunn, E.6
  • 17
    • 70349932423 scopus 로고    scopus 로고
    • AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
    • PMID:19399780
    • Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ. AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J Comput Chem 2009; 30:2785-91; PMID:19399780; http://dx.doi.org/ 10.1002/jcc.21256
    • (2009) J Comput Chem , vol.30 , pp. 2785-2791
    • Morris, G.M.1    Huey, R.2    Lindstrom, W.3    Sanner, M.F.4    Belew, R.K.5    Goodsell, D.S.6    Olson, A.J.7
  • 18
    • 76249112547 scopus 로고    scopus 로고
    • Fast and accurate predictions of binding free energies using MM-PBSA and MM-GBSA
    • PMID:19569205
    • Rastelli G, Del Rio A, Degliesposti G, Sgobba M. Fast and accurate predictions of binding free energies using MM-PBSA and MM-GBSA. J Comput Chem 2010; 31:797-810; PMID:19569205
    • (2010) J Comput Chem , vol.31 , pp. 797-810
    • Rastelli, G.1    Del Rio, A.2    Degliesposti, G.3    Sgobba, M.4
  • 19
    • 78951470687 scopus 로고    scopus 로고
    • BEAR, a novel virtual screening methodology for drug discovery
    • PMID:21084717
    • Degliesposti G, Portioli C, Parenti MD, Rastelli G. BEAR, a novel virtual screening methodology for drug discovery. J Biomol Screen 2011; 16:129-33; PMID:21084717; http://dx.doi.org/10.1177/1087057110388276
    • (2011) J Biomol Screen , vol.16 , pp. 129-133
    • Degliesposti, G.1    Portioli, C.2    Parenti, M.D.3    Rastelli, G.4
  • 20
    • 84868699636 scopus 로고    scopus 로고
    • Application of a post-docking procedure based on MM-PBSA and MM-GBSA on single and multiple protein conformations
    • PMID:23153814
    • Sgobba M, Caporuscio F, Anighoro A, Portioli C, Rastelli G. Application of a post-docking procedure based on MM-PBSA and MM-GBSA on single and multiple protein conformations. Eur J Med Chem 2012; 58:431-40; PMID:23153814; http://dx.doi.org/10.1016/j.ejmech.2012.10.024
    • (2012) Eur J Med Chem , vol.58 , pp. 431-440
    • Sgobba, M.1    Caporuscio, F.2    Anighoro, A.3    Portioli, C.4    Rastelli, G.5
  • 21
    • 67749097923 scopus 로고    scopus 로고
    • Design and discovery of plasmepsin II inhibitors using an automated workflow on large-scale grids
    • PMID:19437467
    • Degliesposti G, Kasam V, Da Costa A, Kang HK, Kim N, Kim DW, Breton V, Kim D, Rastelli G. Design and discovery of plasmepsin II inhibitors using an automated workflow on large-scale grids. ChemMedChem 2009; 4:1164-73; PMID:19437467; http://dx.doi.org/10.1002/cmdc.200900111
    • (2009) ChemMedChem , vol.4 , pp. 1164-1173
    • Degliesposti, G.1    Kasam, V.2    Da Costa, A.3    Kang, H.K.4    Kim, N.5    Kim, D.W.6    Breton, V.7    Kim, D.8    Rastelli, G.9
  • 22
    • 84862236266 scopus 로고    scopus 로고
    • Detection of allosteric kinase inhibitors by displacement of active site probes
    • PMID:22453235
    • Lebakken CS, Reichling LJ, Ellefson JM, Riddle SM. Detection of allosteric kinase inhibitors by displacement of active site probes. J Biomol Screen 2012; 17:813-21; PMID:22453235; http://dx.doi.org/10.1177/ 1087057112439889
    • (2012) J Biomol Screen , vol.17 , pp. 813-821
    • Lebakken, C.S.1    Reichling, L.J.2    Ellefson, J.M.3    Riddle, S.M.4
  • 23
    • 77950283692 scopus 로고    scopus 로고
    • Fluorophore labeling of the glycine-rich loop as a method of identifying inhibitors that bind to active and inactive kinase conformations
    • PMID:20201574
    • Simard JR, Getlik M, Grütter C, Schneider R, Wulfert S, Rauh D. Fluorophore labeling of the glycine-rich loop as a method of identifying inhibitors that bind to active and inactive kinase conformations. J Am Chem Soc 2010; 132:4152-60; PMID:20201574; http://dx.doi.org/10.1021/ja908083e
    • (2010) J Am Chem Soc , vol.132 , pp. 4152-4160
    • Simard, J.R.1    Getlik, M.2    Grütter, C.3    Schneider, R.4    Wulfert, S.5    Rauh, D.6
  • 24
    • 79952171625 scopus 로고    scopus 로고
    • Probing the links between in vitro potency, ADMET and physicochemical parameters
    • PMID:21358739
    • Gleeson MP, Hersey A, Montanari D, Overington J. Probing the links between in vitro potency, ADMET and physicochemical parameters. Nat Rev Drug Discov 2011; 10:197-208; PMID:21358739; http://dx.doi.org/10.1038/nrd3367
    • (2011) Nat Rev Drug Discov , vol.10 , pp. 197-208
    • Gleeson, M.P.1    Hersey, A.2    Montanari, D.3    Overington, J.4
  • 25
    • 84876469966 scopus 로고    scopus 로고
    • Emerging topics in structure-based virtual screening
    • PMID:23468050
    • Rastelli G. Emerging topics in structure-based virtual screening. Pharm Res 2013; 30:1458-63; PMID:23468050; http://dx.doi.org/10.1007/s11095-013-1012-9
    • (2013) Pharm Res , vol.30 , pp. 1458-1463
    • Rastelli, G.1
  • 26
    • 27144543745 scopus 로고    scopus 로고
    • CDK2 catalytic activity and loss of nuclear tethering of retinoblastoma protein in childhood acute lymphoblastic leukemia
    • PMID:16107892
    • Schmitz NM, Leibundgut K, Hirt A. CDK2 catalytic activity and loss of nuclear tethering of retinoblastoma protein in childhood acute lymphoblastic leukemia. Leukemia 2005; 19:1783-7; PMID:16107892; http://dx.doi.org/10.1038/sj. leu.2403900
    • (2005) Leukemia , vol.19 , pp. 1783-1787
    • Schmitz, N.M.1    Leibundgut, K.2    Hirt, A.3
  • 27
    • 0028931265 scopus 로고
    • Principles of CDK regulation
    • PMID:7877684
    • Morgan DO. Principles of CDK regulation. Nature 1995; 374:131-4; PMID:7877684; http://dx.doi.org/10.1038/374131a0
    • (1995) Nature , vol.374 , pp. 131-134
    • Morgan, D.O.1
  • 28
    • 0038052805 scopus 로고    scopus 로고
    • The cell cycle: A review of regulation, deregulation and therapeutic targets in cancer
    • PMID:12814430
    • Vermeulen K, Van Bockstaele DR, Berneman ZN. The cell cycle: a review of regulation, deregulation and therapeutic targets in cancer. Cell Prolif 2003; 36:131-49; PMID:12814430; http://dx.doi.org/10.1046/j.1365-2184.2003.00266.x
    • (2003) Cell Prolif , vol.36 , pp. 131-149
    • Vermeulen, K.1    Van Bockstaele, D.R.2    Berneman, Z.N.3
  • 29
    • 0030998797 scopus 로고    scopus 로고
    • Regulation of CDK/cyclin complexes during the cell cycle
    • PMID:9363633
    • Arellano M, Moreno S. Regulation of CDK/cyclin complexes during the cell cycle. Int J Biochem Cell Biol 1997; 29:559-73; PMID:9363633; http://dx.doi.org/10.1016/S1357-2725(96)00178-1
    • (1997) Int J Biochem Cell Biol , vol.29 , pp. 559-573
    • Arellano, M.1    Moreno, S.2
  • 32
    • 0033397980 scopus 로고    scopus 로고
    • Python: A programming language for software integration and development
    • PMID:10660911
    • Sanner MF. Python: a programming language for software integration and development. J Mol Graph Model 1999; 17:57-61; PMID:10660911
    • (1999) J Mol Graph Model , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 33
    • 0242663237 scopus 로고    scopus 로고
    • A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
    • PMID:14531054
    • Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, Zhang W, Yang R, Cieplak P, Luo R, Lee T, et al. A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J Comput Chem 2003; 24:1999-2012; PMID:14531054; http://dx.doi.org/10.1002/jcc.10349
    • (2003) J Comput Chem , vol.24 , pp. 1999-2012
    • Duan, Y.1    Wu, C.2    Chowdhury, S.3    Lee, M.C.4    Xiong, G.5    Zhang, W.6    Yang, R.7    Cieplak, P.8    Luo, R.9    Lee, T.10
  • 34
    • 2942532422 scopus 로고    scopus 로고
    • Development and testing of a general amber force field
    • PMID:15116359
    • Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA. Development and testing of a general amber force field. J Comput Chem 2004; 25:1157-74; PMID:15116359; http://dx.doi.org/10.1002/jcc.20035
    • (2004) J Comput Chem , vol.25 , pp. 1157-1174
    • Wang, J.1    Wolf, R.M.2    Caldwell, J.W.3    Kollman, P.A.4    Case, D.A.5
  • 35
    • 0034521981 scopus 로고    scopus 로고
    • Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
    • PMID:11123888
    • Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, Chong L, Lee M, Lee T, Duan Y, Wang W, et al. Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 2000; 33:889-97; PMID:11123888; http://dx.doi.org/10.1021/ar000033j
    • (2000) Acc Chem Res , vol.33 , pp. 889-897
    • Kollman, P.A.1    Massova, I.2    Reyes, C.3    Kuhn, B.4    Huo, S.5    Chong, L.6    Lee, M.7    Lee, T.8    Duan, Y.9    Wang, W.10
  • 41
    • 84904482426 scopus 로고    scopus 로고
    • Asinex Ltd: Moscow
    • Asinex; Asinex Ltd: Moscow; http://www.asinex.com


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