-
1
-
-
0018064944
-
The structural basis of antibody complementarity
-
Kabat EA. The structural basis of antibody complementarity. Adv Protein Chem 1978;32:1-75.
-
(1978)
Adv Protein Chem
, vol.32
, pp. 1-75
-
-
Kabat, E.A.1
-
2
-
-
0023278330
-
Canonical structures for the hypervariable regions of immunoglobulins
-
Chothia C, Lesk A. Canonical structures for the hypervariable regions of immunoglobulins. J Mol Biol 1987;196:901-917.
-
(1987)
J Mol Biol
, vol.196
, pp. 901-917
-
-
Chothia, C.1
Lesk, A.2
-
3
-
-
0034426867
-
Antibody modeling: implications for engineering and design
-
Morea V, Lesk AM, Tramontano A. Antibody modeling: implications for engineering and design. Methods 2000;20:267-279.
-
(2000)
Methods
, vol.20
, pp. 267-279
-
-
Morea, V.1
Lesk, A.M.2
Tramontano, A.3
-
4
-
-
65249106714
-
Systematic classification of CDR-L3 in antibodies: implications of the light chain subtypes and the VL-VH interface
-
Kuroda D, Shirai H, Kobori M, Nakamura H. Systematic classification of CDR-L3 in antibodies: implications of the light chain subtypes and the VL-VH interface. Proteins 2009;75:139-146.
-
(2009)
Proteins
, vol.75
, pp. 139-146
-
-
Kuroda, D.1
Shirai, H.2
Kobori, M.3
Nakamura, H.4
-
5
-
-
79251598995
-
A new clustering of antibody CDR loop conformations
-
North B, Lehmann A, Dunbrack RL. A new clustering of antibody CDR loop conformations. J Mol Biol 2011;406:228-256.
-
(2011)
J Mol Biol
, vol.406
, pp. 228-256
-
-
North, B.1
Lehmann, A.2
Dunbrack, R.L.3
-
6
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
7
-
-
79958059559
-
IMGT, the International ImMunoGeneTics Information System
-
Lefranc MP. IMGT, the International ImMunoGeneTics Information System. Cold Spring Harb Protoc 2011;2011:595-603.
-
(2011)
Cold Spring Harb Protoc
, vol.2011
, pp. 595-603
-
-
Lefranc, M.P.1
-
8
-
-
0024844388
-
Conformations of immunoglobulin hypervariable regions
-
Chothia C, Lesk AM, Tramontano A, Levitt M, Smith-Gill SJ, Air G, Sheriff S, Padlan EA, Davies D, Tulip WR, Colman PM, Spinelli S, Alzari PM, Poljak RJ. Conformations of immunoglobulin hypervariable regions. Nature 1989;342:877-883.
-
(1989)
Nature
, vol.342
, pp. 877-883
-
-
Chothia, C.1
Lesk, A.M.2
Tramontano, A.3
Levitt, M.4
Smith-Gill, S.J.5
Air, G.6
Sheriff, S.7
Padlan, E.A.8
Davies, D.9
Tulip, W.R.10
Colman, P.M.11
Spinelli, S.12
Alzari, P.M.13
Poljak, R.J.14
-
9
-
-
0028103275
-
Number 4. The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project
-
Collaborative Computational Project, Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D 1994;50:760-763.
-
(1994)
Acta Crystallogr D
, vol.50
, pp. 760-763
-
-
-
11
-
-
6344260061
-
The origin of enantioselectivity in aldolase antibodies: crystal structure, site-directed mutagenesis, and computational analysis
-
Zhu X, Tanaka F, Hu Y, Heine A, Fuller R, Zhong G, Olson AJ, Lerner RA, Barbas CF, Wilson IA. The origin of enantioselectivity in aldolase antibodies: crystal structure, site-directed mutagenesis, and computational analysis. J Mol Biol 2004;343:1269-1280.
-
(2004)
J Mol Biol
, vol.343
, pp. 1269-1280
-
-
Zhu, X.1
Tanaka, F.2
Hu, Y.3
Heine, A.4
Fuller, R.5
Zhong, G.6
Olson, A.J.7
Lerner, R.A.8
Barbas, C.F.9
Wilson, I.A.10
-
12
-
-
78650904300
-
A PCSK9-binding antibody that structurally mimics the EGF(A) domain of LDL-receptor reduces LDL cholesterol in vivo
-
Ni YG, Di Marco S, Condra JH, Peterson LB, Wang W, Wang F, Pandit S, Hammond HA, Rosa R, Cummings RT, Wood DD, Liu X, Bottomley MJ, Shen X, Cubbon RM, Wang SP, Johns DG, Volpari C, Hamuro L, Chin J, Huang L, Zhao JZ, Vitelli S, Haytko P, Wisniewski D, Mitnaul LJ, Sparrow CP, Hubbard B, Carfí A, Sitlani A. A PCSK9-binding antibody that structurally mimics the EGF(A) domain of LDL-receptor reduces LDL cholesterol in vivo. J Lipid Res 2011;52:78-86.
-
(2011)
J Lipid Res
, vol.52
, pp. 78-86
-
-
Ni, Y.G.1
Di Marco, S.2
Condra, J.H.3
Peterson, L.B.4
Wang, W.5
Wang, F.6
Pandit, S.7
Hammond, H.A.8
Rosa, R.9
Cummings, R.T.10
Wood, D.D.11
Liu, X.12
Bottomley, M.J.13
Shen, X.14
Cubbon, R.M.15
Wang, S.P.16
Johns, D.G.17
Volpari, C.18
Hamuro, L.19
Chin, J.20
Huang, L.21
Zhao, J.Z.22
Vitelli, S.23
Haytko, P.24
Wisniewski, D.25
Mitnaul, L.J.26
Sparrow, C.P.27
Hubbard, B.28
Carfí, A.29
Sitlani, A.30
more..
-
13
-
-
79960246273
-
Structural insights into parallel strategies for germline antibody recognition of lipopolysaccharide from Chlamydia
-
Evans DW, Müller-Loennies S, Brooks CL, Brade L, Kosma P, Brade H, Evans SV. Structural insights into parallel strategies for germline antibody recognition of lipopolysaccharide from Chlamydia. Glycobiology 2011;21:1049-1059.
-
(2011)
Glycobiology
, vol.21
, pp. 1049-1059
-
-
Evans, D.W.1
Müller-Loennies, S.2
Brooks, C.L.3
Brade, L.4
Kosma, P.5
Brade, H.6
Evans, S.V.7
-
14
-
-
79953776654
-
His-tag binding by antibody C706 mimics β-amyloid recognition
-
Teplyakov A, Obmolova G, Canziani G, Zhao Y, Gutshall L, Jung SS, Gilliland GL. His-tag binding by antibody C706 mimics β-amyloid recognition. J Mol Recognit 2011;24:570-575.
-
(2011)
J Mol Recognit
, vol.24
, pp. 570-575
-
-
Teplyakov, A.1
Obmolova, G.2
Canziani, G.3
Zhao, Y.4
Gutshall, L.5
Jung, S.S.6
Gilliland, G.L.7
-
15
-
-
0034436049
-
Mutual conformational adaptations in antigen and antibody upon complex formation between an Fab and HIV-1 capsid protein p24
-
Monaco-Malbet S, Berthet-Colominas C, Novelli A, Battaï N, Piga N, Cheynet V, Mallet F, Cusack S. Mutual conformational adaptations in antigen and antibody upon complex formation between an Fab and HIV-1 capsid protein p24. Structure 2000;8:1069-1077.
-
(2000)
Structure
, vol.8
, pp. 1069-1077
-
-
Monaco-Malbet, S.1
Berthet-Colominas, C.2
Novelli, A.3
Battaï, N.4
Piga, N.5
Cheynet, V.6
Mallet, F.7
Cusack, S.8
-
16
-
-
0031558798
-
Standard conformations for the canonical structures of immunoglobulins
-
Al-Lazikani B, Lesk AM, Chothia C. Standard conformations for the canonical structures of immunoglobulins. J Mol Biol 1997;273:927-948.
-
(1997)
J Mol Biol
, vol.273
, pp. 927-948
-
-
Al-Lazikani, B.1
Lesk, A.M.2
Chothia, C.3
-
17
-
-
0036568230
-
Modifications to canonical structure sequence patterns: analysis for L1 and L3
-
Vargas-Madrazo E, Paz-García E. Modifications to canonical structure sequence patterns: analysis for L1 and L3. Proteins 2002;47:250-254.
-
(2002)
Proteins
, vol.47
, pp. 250-254
-
-
Vargas-Madrazo, E.1
Paz-García, E.2
-
18
-
-
0028027058
-
Crystal structure of a catalytic antibody with a serine protease active site
-
Zhou GW, Guo J, Huang W, Fletterick RJ, Scanlan TS. Crystal structure of a catalytic antibody with a serine protease active site. Science 1994;265:1059-1064.
-
(1994)
Science
, vol.265
, pp. 1059-1064
-
-
Zhou, G.W.1
Guo, J.2
Huang, W.3
Fletterick, R.J.4
Scanlan, T.S.5
-
19
-
-
0030031169
-
Conformation of the hypervariable region L3 without the key proline residue
-
Guarné A, Bravo J, Calvo J, Lozano F, Vives J, Fita I. Conformation of the hypervariable region L3 without the key proline residue. Protein Sci 1996;5:167-169.
-
(1996)
Protein Sci
, vol.5
, pp. 167-169
-
-
Guarné, A.1
Bravo, J.2
Calvo, J.3
Lozano, F.4
Vives, J.5
Fita, I.6
-
20
-
-
34047171268
-
Identification of a B-cell epitope of hyaluronidase, a major bee venom allergen, from its crystal structure in complex with a specific Fab
-
Padavattan S, Schirmer T, Schmidt M, Akdis C, Valenta R, Mittermann I, Soldatova L, Slater J, Mueller U, Markovic-Housley Z. Identification of a B-cell epitope of hyaluronidase, a major bee venom allergen, from its crystal structure in complex with a specific Fab. J Mol Biol 2007;368:742-752.
-
(2007)
J Mol Biol
, vol.368
, pp. 742-752
-
-
Padavattan, S.1
Schirmer, T.2
Schmidt, M.3
Akdis, C.4
Valenta, R.5
Mittermann, I.6
Soldatova, L.7
Slater, J.8
Mueller, U.9
Markovic-Housley, Z.10
-
21
-
-
0038076054
-
X-ray structure of a voltage-dependent K+ channel
-
Jiang Y, Lee A, Chen J, Ruta V, Cadene M, Chait BT, MacKinnon R. X-ray structure of a voltage-dependent K+ channel. Nature 2003;423:33-41.
-
(2003)
Nature
, vol.423
, pp. 33-41
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Ruta, V.4
Cadene, M.5
Chait, B.T.6
MacKinnon, R.7
-
22
-
-
84887434165
-
How natalizumab binds and antagonizes α4 integrins
-
Yu Y, Schürpf T, Springer TA. How natalizumab binds and antagonizes α4 integrins. J Biol Chem. 2013;288:32314-32325.
-
(2013)
J Biol Chem.
, vol.288
, pp. 32314-32325
-
-
Yu, Y.1
Schürpf, T.2
Springer, T.A.3
-
23
-
-
84904470524
-
Structural evidence for a constrained conformation of short CDR-L3 in antibodies
-
doi: 10.1002/prot.24522.
-
Teplyakov A, Obmolova G, Malia TJ, Luo J, Gilliland GL. Structural evidence for a constrained conformation of short CDR-L3 in antibodies. Proteins 2014, doi: 10.1002/prot.24522.
-
(2014)
Proteins
-
-
Teplyakov, A.1
Obmolova, G.2
Malia, T.J.3
Luo, J.4
Gilliland, G.L.5
-
24
-
-
79955081531
-
A common NH53K mutation in the combining site of antibodies raised against chlamydial LPS glycoconjugates significantly increases avidity
-
Blackler RJ, Müller-Loennies S, Brooks CL, Evans DW, Brade L, Kosma P, Brade H, Evans SV. A common NH53K mutation in the combining site of antibodies raised against chlamydial LPS glycoconjugates significantly increases avidity. Biochemistry 2011;50:3357-3368.
-
(2011)
Biochemistry
, vol.50
, pp. 3357-3368
-
-
Blackler, R.J.1
Müller-Loennies, S.2
Brooks, C.L.3
Evans, D.W.4
Brade, L.5
Kosma, P.6
Brade, H.7
Evans, S.V.8
-
25
-
-
77953384504
-
Antibody recognition of a unique tumor-specific glycopeptide antigen
-
Brooks CL, Schietinger A, Borisova SN, Kufer P, Okon M, Hirama T, Mackenzie CR, Wang LX, Schreiber H, Evans SV. Antibody recognition of a unique tumor-specific glycopeptide antigen. Proc Natl Acad Sci USA 2010;107:10056-10061.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 10056-10061
-
-
Brooks, C.L.1
Schietinger, A.2
Borisova, S.N.3
Kufer, P.4
Okon, M.5
Hirama, T.6
Mackenzie, C.R.7
Wang, L.X.8
Schreiber, H.9
Evans, S.V.10
-
26
-
-
84864138467
-
The peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics
-
Mage MG, Dolan MA, Wang R, Boyd LF, Revilleza MJ, Robinson H, Natarajan K, Myers NB, Hansen TH, Margulies DH. The peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics. J Immunol 2012;189:1391-1399.
-
(2012)
J Immunol
, vol.189
, pp. 1391-1399
-
-
Mage, M.G.1
Dolan, M.A.2
Wang, R.3
Boyd, L.F.4
Revilleza, M.J.5
Robinson, H.6
Natarajan, K.7
Myers, N.B.8
Hansen, T.H.9
Margulies, D.H.10
-
27
-
-
80054001999
-
Antibody modeling assessment
-
Almagro JC, Beavers MP, Hernandez-Guzman F, Maier J, Shaulsky J, Butenhof K, Labute P, Thorsteinson N, Kelly K, Teplyakov A, Luo J, Sweet R, Gilliland GL. Antibody modeling assessment. Proteins 2011;79:3050-3066.
-
(2011)
Proteins
, vol.79
, pp. 3050-3066
-
-
Almagro, J.C.1
Beavers, M.P.2
Hernandez-Guzman, F.3
Maier, J.4
Shaulsky, J.5
Butenhof, K.6
Labute, P.7
Thorsteinson, N.8
Kelly, K.9
Teplyakov, A.10
Luo, J.11
Sweet, R.12
Gilliland, G.L.13
-
28
-
-
84904515208
-
Antibody modeling assessment II: structures and models
-
doi: 10.1002/prot.24554.
-
Teplyakov A, Luo J, Obmolova G, Malia TJ, Sweet R, Stanfield RL, Kodangatti S, Almagro JC, Gilliland GL. Antibody modeling assessment II: structures and models. Proteins 2014, doi: 10.1002/prot.24554.
-
(2014)
Proteins
-
-
Teplyakov, A.1
Luo, J.2
Obmolova, G.3
Malia, T.J.4
Sweet, R.5
Stanfield, R.L.6
Kodangatti, S.7
Almagro, J.C.8
Gilliland, G.L.9
|